Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27660 517 / 0 Trypsin family protein with PDZ domain (.1) AT5G39830 120 / 1e-29 DEG8, DEGP8 DEG PROTEASE 8, Trypsin family protein with PDZ domain (.1.2) AT3G27925 118 / 4e-29 DEGP, DegP1, DEG1 DegP protease 1 (.1) AT4G18370 84 / 6e-18 DEGP5, DEG5, HHOA PROTEASE HHOA PRECUSOR, DEGP protease 5 (.1) AT2G47940 75 / 3e-14 EMB3117, DEGP2 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2) AT5G40200 56 / 4e-08 DEGP9 DegP protease 9 (.1) AT1G65640 50 / 2e-06 DEGP4 DegP protease 4 (.1) AT1G65630 50 / 3e-06 DEGP3 DegP protease 3 (.1) AT5G40560 48 / 1e-05 DEGP13 DegP protease 13 (.1) AT5G36950 48 / 1e-05 DEGP10 DegP protease 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G001301 [exp] 129 / 2e-33 AT5G27660 119 / 4e-30 Trypsin family protein with PDZ domain (.1) Potri.018G001550 [exp] 128 / 1e-32 AT5G27660 102 / 1e-23 Trypsin family protein with PDZ domain (.1) Potri.018G001500 [exp] 122 / 2e-30 AT5G27660 102 / 2e-23 Trypsin family protein with PDZ domain (.1) Potri.001G348800 [exp] 119 / 2e-29 AT3G27925 595 / 0.0 DegP protease 1 (.1) Potri.004G129200 [exp] 107 / 3e-25 AT5G39830 595 / 0.0 DEG PROTEASE 8, Trypsin family protein with PDZ domain (.1.2) Potri.011G083300 [exp] 84 / 7e-18 AT4G18370 355 / 4e-123 PROTEASE HHOA PRECUSOR, DEGP protease 5 (.1) Potri.002G207200 [exp] 78 / 3e-15 AT2G47940 931 / 0.0 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2) Potri.014G135200 [exp] 76 / 1e-14 AT2G47940 932 / 0.0 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2) Potri.012G077900 [exp] 66 / 2e-11 AT5G40200 845 / 0.0 DegP protease 9 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037815 [exp] 488 / 2e-171 AT5G27660 491 / 9e-173 Trypsin family protein with PDZ domain (.1) Lus10017093 [exp] 385 / 2e-131 AT5G27660 393 / 9e-135 Trypsin family protein with PDZ domain (.1) Lus10008781 [exp] 118 / 6e-29 AT3G27925 641 / 0.0 DegP protease 1 (.1) Lus10007262 [exp] 100 / 4e-23 AT5G39830 597 / 0.0 DEG PROTEASE 8, Trypsin family protein with PDZ domain (.1.2) Lus10022234 [exp] 99 / 3e-22 AT3G27925 623 / 0.0 DegP protease 1 (.1) Lus10042822 [exp] 83 / 4e-17 AT4G18370 329 / 3e-112 PROTEASE HHOA PRECUSOR, DEGP protease 5 (.1) Lus10028120 [exp] 75 / 2e-14 AT4G18370 284 / 4e-94 PROTEASE HHOA PRECUSOR, DEGP protease 5 (.1) Lus10014524 [exp] 57 / 2e-08 AT5G40200 843 / 0.0 DegP protease 9 (.1) Lus10032163 [exp] 54 / 1e-07 AT5G40200 843 / 0.0 DegP protease 9 (.1) Lus10008726 [exp] 51 / 1e-06 AT5G36950 443 / 7e-153 DegP protease 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0124 [poplar] [flax] Peptidase_PA PF00089 [poplar] [flax] Trypsin Trypsin CL0466 [poplar] [flax] PDZ-like PF13180 [poplar] [flax] PDZ_2 PDZ domain
Representative CDS sequence Show only first row Show all	>Potri.013G018300.3 pacid=42811425 polypeptide=Potri.013G018300.3.p locus=Potri.013G018300 ID=Potri.013G018300.3.v4.1 annot-version=v4.1 ATGATGGATTATTTACTGAGAAAGGTTTCAACATGTCCTAGTAAATACATTCGCATTCCAGTCATTGCCATTGCTGCTGCTGCTGCTGGTGGATCCGGTC TCTTGTATGCAAACAGCAAGCACCGTGATTCCGATACAAGGATATCACTTTCATTTCGTGCTGAATCTTTGCATGAATCTTTGCTACTTCCATGGCGAAC ACCACTGGACTTGACCCAGCATAGTTGGCACTTTGATTTTGTAGGAAATCTCCCGTTATTCTCTTCTAGAATCAGTCCTGTTCCATCTGGTGATATAAAG AATGAAAATCCAGGGGTTGTTGGAGAGAGTCCAAAACCCAGTTGTGGATGTTTAGGCAGAGATACCATCGCAAATGCGGCTGCTAGGGTTGGTCCTGCTG TTGTTAATCTATCTGTTCCAAAGGGATTCTATGGGATTACTACTGGAAAGAGTATAGGGTCTGGCACTATCATTGATTCAAATGGTACGATCTTGACTTG TGCTCATGTTGTGGTCGATTTTCAAGACATGAGAGATTCATCCAAAGGAAAGGTTGATGTGACTTTGCAAGATGGTCGGACGTTTGAGGGTACAGTGGTC AATGCTGATTTACATTCTGATATTGCTATTGTAAAGATAAAGTCTAAAACCCCACTGCCAACTGCAAAACTTGGTTCATCAAGCAAGCTTCGCCCAGGGG ACTGGGTGGTAGCTATGGGCTGTCCACTTTCCCTTCAAAATACCGTGACAGCTGGCATTGTTAGCTGTGTTGATCGTAAAAGCAGTGACTTGGGTCTTGG AGGAATGCGAAGAGAGTATTTACAGACAGATTGTGCAATCAATATGGGAAATTCTGGTGGGCCGCTCATTAATGTTGATGGAGAAGTTGTTGGTGTTAAT ATCATGAAAGTACTGGCTGCAGATGGATTAAGTTTTGCTGTACCAATTGATTCAATTGCCAAAATTATGGAGCATTTCAAAAGGAGTGGGAGAGTCATTC GGCCTTGGCTTGGCTTGAAAATGATTGATCTTAATGAGATGATCATTACTCAACTTAAAGAGAGAGATCCCAAATTCCCTAATGTTAAAGAAGGTGTTCT TGTACCTATGGTAACTCCAGGCTCTCCAGCTGATCGTGCTGGATTCCACCCTGGTGATGTTGTCATCAAATTTGATGGGAAGCCTGTTCGAAGCATCAAG GAGATCATTGAAATTATGGGAGACAGAGTTGGCAAACCCTTGGAGGTAGTTCTGAAAAGACCAAATGATGTGGTGGTGAATTTGACTGTTATTCCAGAGG AGGCAAATCCAGATATGTGA
AA sequence Show only first row Show all	>Potri.013G018300.3 pacid=42811425 polypeptide=Potri.013G018300.3.p locus=Potri.013G018300 ID=Potri.013G018300.3.v4.1 annot-version=v4.1 MMDYLLRKVSTCPSKYIRIPVIAIAAAAAGGSGLLYANSKHRDSDTRISLSFRAESLHESLLLPWRTPLDLTQHSWHFDFVGNLPLFSSRISPVPSGDIK NENPGVVGESPKPSCGCLGRDTIANAAARVGPAVVNLSVPKGFYGITTGKSIGSGTIIDSNGTILTCAHVVVDFQDMRDSSKGKVDVTLQDGRTFEGTVV NADLHSDIAIVKIKSKTPLPTAKLGSSSKLRPGDWVVAMGCPLSLQNTVTAGIVSCVDRKSSDLGLGGMRREYLQTDCAINMGNSGGPLINVDGEVVGVN IMKVLAADGLSFAVPIDSIAKIMEHFKRSGRVIRPWLGLKMIDLNEMIITQLKERDPKFPNVKEGVLVPMVTPGSPADRAGFHPGDVVIKFDGKPVRSIK EIIEIMGDRVGKPLEVVLKRPNDVVVNLTVIPEEANPDM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G27660			Trypsin family protein with PD...		Potri.013G018300 [exp]	0	1
AT5G11760			unknown protein		Potri.018G056000 [exp]	2.23	0.7537
AT5G50810		TIM8	translocase inner membrane sub...		Potri.012G103400 [exp]	3.87	0.7839
AT4G33100			unknown protein		Potri.006G224400 [exp]	8.48	0.7269
AT2G44850			unknown protein		Potri.002G137300 [exp]	14.89	0.7591
AT3G19508			unknown protein		Potri.001G299200 [exp]	16.61	0.7722
AT1G10865			unknown protein		Potri.010G248800 [exp]	18.76	0.7204
AT4G13850		ATGRP2, GR-RBP2	glycine rich protein 2, glycin...		Potri.001G236300 [exp]	20.32	0.6495
AT4G13850		ATGRP2, GR-RBP2	glycine rich protein 2, glycin...		Potri.017G059000 [exp]	23.83	0.7319
AT2G18400			ribosomal protein L6 family pr...		Potri.007G024900 [exp]	25.29	0.7215
AT5G60390			GTP binding Elongation factor ...		Potri.010G218800 [exp]	28.72	0.7113

Compare expression of checked genes

Potri.013G018300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.