Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62770 497 / 4e-176 ATATG18A autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) AT3G56440 412 / 4e-143 ATATG18D homolog of yeast autophagy 18 (ATG18) D (.1) AT2G40810 409 / 3e-142 ATATG18C homolog of yeast autophagy 18C (.1.2) AT5G05150 284 / 2e-93 ATATG18E ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18E, autophagy-related gene 18E (.1) AT4G30510 96 / 9e-23 ATATG18B ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) B, homolog of yeast autophagy 18 (ATG18) B (.1), homolog of yeast autophagy 18 (ATG18) B (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G026600 [exp] 665 / 0 AT3G62770 491 / 7e-174 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Potri.002G207865 [exp] 493 / 2e-174 AT3G62770 596 / 0.0 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Potri.014G132300 [exp] 490 / 3e-173 AT3G62770 565 / 0.0 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Potri.019G062800 [exp] 409 / 6e-142 AT2G40810 609 / 0.0 homolog of yeast autophagy 18C (.1.2) Potri.018G101200 [exp] 125 / 3e-32 AT4G30510 432 / 2e-152 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) B, homolog of yeast autophagy 18 (ATG18) B (.1), homolog of yeast autophagy 18 (ATG18) B (.2) Potri.011G132700 [exp] 44 / 0.0002 AT5G54730 510 / 8e-169 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1) Potri.001G417000 [exp] 42 / 0.0005 AT5G54730 501 / 2e-165 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031500 [exp] 530 / 0 AT3G62770 493 / 1e-173 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10004501 [exp] 525 / 0 AT3G62770 493 / 5e-174 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10015178 [exp] 521 / 0 AT3G62770 489 / 4e-172 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10029900 [exp] 510 / 0 AT3G62770 479 / 2e-168 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10036577 [exp] 489 / 8e-173 AT3G62770 610 / 0.0 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10041353 [exp] 487 / 4e-172 AT3G62770 608 / 0.0 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10003694 [exp] 378 / 9e-130 AT2G40810 580 / 0.0 homolog of yeast autophagy 18C (.1.2) Lus10001580 [exp] 375 / 3e-128 AT2G40810 577 / 0.0 homolog of yeast autophagy 18C (.1.2) Lus10034995 [exp] 59 / 2e-09 AT3G62770 108 / 9e-31 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10023022 [exp] 50 / 1e-07 AT3G62770 46 / 7e-07 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.013G018400.1 pacid=42810792 polypeptide=Potri.013G018400.1.p locus=Potri.013G018400 ID=Potri.013G018400.1.v4.1 annot-version=v4.1 ATGGCGACCCGAACCGAATCCGACTCTGGACCCGATAACCACACCACAACCACCACCACCATAACCAACAACCCAACCCAAGTAGCAACCCCTCCAACCT ATCACCTGTCCTTTAACCAAAACCACACCTGCTTCTCAGTTGGACTCCAAAACGGGTTCCGGGTCTTTGACACGGACCCATTCAAACCCTCGTTCCGCCG CGAATTAGACACACACGGCGGCATCGGATTGGTCGCCATGCTTTACCGCTGCAACCTCTTCTGCCTAGTTGGTGGCGGACCCGACCCGATTTACCCCAGC AACAAAGTGATGATTTGGGACGACCATGTTTCCCGGTGTATAGGAGAATTATCATTCAGGTCAGAGGTCAGGAACGTAAAACTTCGCCGCGATATGATCG TAGTTGTATTGAACCAAAAGATATTTGTTTACAATTTCTTGGACTTGAAGTTATTGCTTCAAATAGAGACGGTTTTGAACCCTAATGGGTTGTGTGAGAT TTCGCAGAATTCTTCGCCAATGGTTTTGGTTAGTCTAGGGTTGCAAAAGGGTCAAATTAGGGTGGAGAATTTTGGGTCGAAGAAGAGTAAGTTTGTTATG GCTCATGATTCAAGAGTTGTTTGCATGAGTTTAACTCAAGATGGGGGGAGGTTAGCGACCGCGAGCTCTAAAGGGACTTTGATTAGAGTATTTAATACTT TGGATGGGACTTTGTTACAAGAGGTTAGGAGAGGTGCAGATAGAGCAGATATCTACAGCCTAGTATTTTCATCCAATGCTCAGTTCCTAGCTGTCTCAAG CGATAAGGGAACTGTACATATCTTTAGTCTCAAGGTTGATTCAGGGTCCTTGGCCTCACTGACAAATGACAGATCTCACATTGCATCTGAACCAATTCAT TCTAGACTTTCATCTCTTTGCCTATTCAAAGGTGTGTTGCCAAAGTATTTCAGCTCAGAGTGGTCAGTAGCCCAGTTTCGATTACCTGAAGGTTTGCAGT ACTTTGTTGGGTTTGGCCAGCAGAAGAACACTATTGTCATCATCGGCATGGATGGAAGCTTCTATAGATGTGAGTTTGATCCAGTGGCTGGTGGGGAGAT GATCCAGCTTGAATATCACAATTTTCTAAACGCGGAGAATTTCTGA
AA sequence Show only first row Show all	>Potri.013G018400.1 pacid=42810792 polypeptide=Potri.013G018400.1.p locus=Potri.013G018400 ID=Potri.013G018400.1.v4.1 annot-version=v4.1 MATRTESDSGPDNHTTTTTTITNNPTQVATPPTYHLSFNQNHTCFSVGLQNGFRVFDTDPFKPSFRRELDTHGGIGLVAMLYRCNLFCLVGGGPDPIYPS NKVMIWDDHVSRCIGELSFRSEVRNVKLRRDMIVVVLNQKIFVYNFLDLKLLLQIETVLNPNGLCEISQNSSPMVLVSLGLQKGQIRVENFGSKKSKFVM AHDSRVVCMSLTQDGGRLATASSKGTLIRVFNTLDGTLLQEVRRGADRADIYSLVFSSNAQFLAVSSDKGTVHIFSLKVDSGSLASLTNDRSHIASEPIH SRLSSLCLFKGVLPKYFSSEWSVAQFRLPEGLQYFVGFGQQKNTIVIIGMDGSFYRCEFDPVAGGEMIQLEYHNFLNAENF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Potri.013G018400 [exp]	0	1
AT3G60410			Protein of unknown function (D...		Potri.002G136200 [exp]	8.83	0.8834
AT1G10500		ATCPISCA	chloroplast-localized ISCA-lik...		Potri.007G079600 [exp]	12.36	0.9135
AT5G27280			Zim17-type zinc finger protein...		Potri.005G246200 [exp]	14.07	0.9127
AT5G02390		DAU1	DUO1-activated unknown 1, Prot...		Potri.009G030700 [exp]	15.00	0.9034
AT1G30260		AGL79	unknown protein		Potri.004G133180 [exp]	15.65	0.9006
AT5G05710			Pleckstrin homology (PH) domai...		Potri.010G190500 [exp]	16.24	0.8999
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.017G096600 [exp]	16.37	0.9077
					Potri.014G090000 [exp]	16.88	0.8927
AT4G07990			Chaperone DnaJ-domain superfam...		Potri.002G114600 [exp]	17.54	0.8931
AT1G64950		CYP89A5	"cytochrome P450, family 89, s...		Potri.007G088154 [exp]	20.44	0.8975

Compare expression of checked genes

Potri.013G018400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.