Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09070 157 / 7e-46 (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, soybean gene regulated by cold-2 (.1) AT4G15755 113 / 1e-29 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G16510 113 / 5e-29 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT4G15740 97 / 1e-22 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G62780 84 / 9e-19 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G05440 45 / 5e-06 C2 domain-containing protein (.1) AT3G04360 47 / 6e-06 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT5G11100 44 / 0.0001 SYT4, NTMCTYPE2.2, ATSYTD ,NTMC2T2.2 ,NTMC2TYPE2.2 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT4G01200 41 / 0.0004 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G026700 [exp] 239 / 3e-78 AT1G09070 148 / 3e-42 soybean gene regulated by cold-2 (.1) Potri.010G024200 [exp] 157 / 2e-46 AT3G16510 135 / 5e-37 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.008G209800 [exp] 134 / 2e-37 AT3G16510 137 / 8e-38 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.001G070400 [exp] 75 / 4e-15 AT3G16510 82 / 4e-17 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.013G107175 [exp] 72 / 3e-14 AT3G16510 77 / 1e-15 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.005G026650 [exp] 66 / 3e-13 AT1G09070 53 / 9e-09 soybean gene regulated by cold-2 (.1) Potri.003G160400 [exp] 66 / 6e-12 AT3G16510 72 / 8e-14 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.018G025000 [exp] 42 / 0.0004 AT5G11100 824 / 0.0 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.011G088400 [exp] 40 / 0.001 AT5G55530 418 / 9e-145 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029901 [exp] 187 / 6e-58 AT1G09070 172 / 6e-52 soybean gene regulated by cold-2 (.1) Lus10004500 [exp] 184 / 1e-57 AT1G09070 179 / 2e-55 soybean gene regulated by cold-2 (.1) Lus10006523 [exp] 119 / 1e-31 AT3G16510 147 / 1e-41 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10005867 [exp] 45 / 3e-05 AT1G07310 206 / 3e-64 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10040692 [exp] 41 / 0.0007 AT1G07310 189 / 2e-57 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF00168 [poplar] [flax] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Potri.013G018600.1 pacid=42811149 polypeptide=Potri.013G018600.1.p locus=Potri.013G018600 ID=Potri.013G018600.1.v4.1 annot-version=v4.1 ATGGAGTGCAGGCCATTAGAGATCACGGTTGCCTCAGGCAAAGATCTCAAAGATGTGAACGTTTTCGGCAAGATGGATCTCTATTGTGTTGTTTCCATCA AGGGAGATCCACACAAGTCTAAGCAGAAACAGAAAACCCACGTTCATAAAGATTGTGGGCCTAACCCTCTTTGGAATTTCCCCATGAAATTCAACATCGA CGAAGCCGCTGCTCAACAAAATCGCTTGCAAATCAAGTTCAAGCTTCTAGCTGAGCGAATGATGGGAGATAAAGAAGTTGGGGTGGTTTCTGTGCCTGTC AAGGAATTACTGGATTCAAAAGATGGAAAAGGTGGTCTCATGAGCTATGCTGTCAAGACCCCATCTGGGAAGATGAAAGGAACGTTGAGTTTCTCCTTTA ATTTTGGTGAGAAAGTCAGTGCTCCTGCGCCGGAGAAGGCGAAAAAGACGGGCGAGCATGTTGCTGCTGCTGCTTCTCCTGCAAAGGGATATCATGAGCC CGTCACTGCCTACCCTGCAACGGGATATCAGGGTGCTCCTGGTTCAAGTTCTGCCTACCCAGCGCCACCGCCTCAAGCGGCTCCTTATCCATATCCTTAT CCTTATCAGTATCCTCCACCACCCCAACATGGTTATGGTGGATACCCACCTGCACCCGGACATGGGTATCCCGGTTATCCACCACAACCCGGTTATGGTG GGTATCCACCAGTGATGCAACAACAGAAGCCCAAGAAAAGTGGTAAAGGAAATATGGCTTTGGGATTGGGAGCTGGATTGCTTGGTGGATTGCTGGTTGG TGATATGATTTCCGATGTTGGTGAGATGGCTGCCTATGACGATGGCTTTTCTGATGGACTTGATTTTTAG
AA sequence Show only first row Show all	>Potri.013G018600.1 pacid=42811149 polypeptide=Potri.013G018600.1.p locus=Potri.013G018600 ID=Potri.013G018600.1.v4.1 annot-version=v4.1 MECRPLEITVASGKDLKDVNVFGKMDLYCVVSIKGDPHKSKQKQKTHVHKDCGPNPLWNFPMKFNIDEAAAQQNRLQIKFKLLAERMMGDKEVGVVSVPV KELLDSKDGKGGLMSYAVKTPSGKMKGTLSFSFNFGEKVSAPAPEKAKKTGEHVAAAASPAKGYHEPVTAYPATGYQGAPGSSSAYPAPPPQAAPYPYPY PYQYPPPPQHGYGGYPPAPGHGYPGYPPQPGYGGYPPVMQQQKPKKSGKGNMALGLGAGLLGGLLVGDMISDVGEMAAYDDGFSDGLDF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09070		(AT)SRC2, (AT)S...	soybean gene regulated by cold...		Potri.013G018600 [exp]	0	1
AT1G29340		ATPUB17, PUB17	ARABIDOPSIS THALIANA PLANT U-B...		Potri.004G061800 [exp]	1.73	0.8255
AT4G20780		CML42	calmodulin like 42 (.1)		Potri.006G112500 [exp]	4.00	0.8056
AT2G30020			Protein phosphatase 2C family ...		Potri.001G278500 [exp]	14.24	0.7791
AT5G04550			Protein of unknown function (D...		Potri.008G026800 [exp]	14.49	0.7904
AT1G33060	NAC	ANAC014	NAC 014 (.1.2)		Potri.011G149300 [exp]	16.52	0.7172
AT1G66400		CML23	calmodulin like 23 (.1)		Potri.004G089400 [exp]	18.89	0.7077
AT4G17230	GRAS	SCL13	SCARECROW-like 13 (.1)		Potri.016G009700 [exp]	19.59	0.7581
AT2G40140	C3HZnF	ATSZF2, CZF1, Z...	\(SALT-INDUCIBLE ZINC FINGER 2...		Potri.012G145800 [exp]	20.34	0.7893
AT5G48655			RING/U-box superfamily protein...		Potri.002G245500 [exp]	22.44	0.7154
AT2G40140	C3HZnF	ATSZF2, CZF1, Z...	\(SALT-INDUCIBLE ZINC FINGER 2...		Potri.008G069400 [exp]	23.87	0.7986

Compare expression of checked genes

Potri.013G018600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.