Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27650 687 / 0 Tudor/PWWP/MBT superfamily protein (.1) AT3G05430 562 / 0 Tudor/PWWP/MBT superfamily protein (.1) AT5G02950 120 / 1e-27 Tudor/PWWP/MBT superfamily protein (.1) AT3G09670 105 / 7e-23 Tudor/PWWP/MBT superfamily protein (.1.2) AT5G40340 102 / 1e-21 Tudor/PWWP/MBT superfamily protein (.1) AT3G27860 86 / 6e-17 Tudor/PWWP/MBT superfamily protein (.1) AT1G48560 46 / 0.0001 unknown protein AT3G48190 44 / 0.0009 PIG1, ATATM, ATM pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G026800 [exp] 1598 / 0 AT5G27650 431 / 1e-132 Tudor/PWWP/MBT superfamily protein (.1) Potri.008G209900 [exp] 175 / 4e-50 AT5G27650 149 / 1e-41 Tudor/PWWP/MBT superfamily protein (.1) Potri.004G130600 [exp] 116 / 4e-26 AT5G40340 220 / 5e-59 Tudor/PWWP/MBT superfamily protein (.1) Potri.010G216900 [exp] 110 / 4e-24 AT3G09670 235 / 7e-65 Tudor/PWWP/MBT superfamily protein (.1.2) Potri.008G044600 [exp] 104 / 2e-22 AT5G02950 279 / 2e-80 Tudor/PWWP/MBT superfamily protein (.1) Potri.016G085500 [exp] 103 / 3e-22 AT3G09670 260 / 4e-77 Tudor/PWWP/MBT superfamily protein (.1.2) Potri.006G131800 [exp] 102 / 9e-22 AT3G09670 236 / 2e-66 Tudor/PWWP/MBT superfamily protein (.1.2) Potri.012G081500 [exp] 78 / 2e-14 AT3G48190 131 / 2e-30 pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1) Potri.003G188600 [exp] 55 / 4e-07 AT1G48560 69 / 9e-12 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015177 [exp] 696 / 0 AT5G27650 634 / 0.0 Tudor/PWWP/MBT superfamily protein (.1) Lus10031498 [exp] 691 / 0 AT5G27650 633 / 0.0 Tudor/PWWP/MBT superfamily protein (.1) Lus10014546 [exp] 108 / 1e-23 AT5G40340 184 / 2e-47 Tudor/PWWP/MBT superfamily protein (.1) Lus10032141 [exp] 107 / 3e-23 AT5G40340 187 / 3e-48 Tudor/PWWP/MBT superfamily protein (.1) Lus10012010 [exp] 102 / 5e-22 AT3G09670 283 / 2e-85 Tudor/PWWP/MBT superfamily protein (.1.2) Lus10023486 [exp] 103 / 8e-22 AT5G02950 207 / 2e-55 Tudor/PWWP/MBT superfamily protein (.1) Lus10016267 [exp] 102 / 8e-22 AT3G09670 276 / 9e-82 Tudor/PWWP/MBT superfamily protein (.1.2) Lus10040367 [exp] 102 / 9e-22 AT5G02950 209 / 8e-56 Tudor/PWWP/MBT superfamily protein (.1) Lus10002382 [exp] 57 / 8e-08 AT3G48190 115 / 1e-25 pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1) Lus10042113 [exp] 48 / 7e-05 AT3G48190 115 / 1e-25 pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0049 [poplar] [flax] Tudor PF00855 [poplar] [flax] PWWP PWWP domain
Representative CDS sequence Show only first row Show all	>Potri.013G018700.1 pacid=42811570 polypeptide=Potri.013G018700.1.p locus=Potri.013G018700 ID=Potri.013G018700.1.v4.1 annot-version=v4.1 ATGATATATGCTGAATTACACACAAAAAATTCGAATGGAGAGGAAGAAGAACCTAGGGTTTCATCAATCGAGAGTGAACAACAAGAAGCTAAGAATGCTA GGGTTTCTAAGATTGAAGAAGAGGAAGAACCAGAAGAAGAAGAATCTAGGGTTTCTGAAGTGAGAAGTGAAAGAAGTTTTGATTTTGCTGTTAAAGATGA AGAGAGGCAAGATAGGTTAGCGTTAGGAGATTATAGATCTTTATGGAGTGAATTTGATGATTTTGTTGCTAACGAGGATAATGGAGCAATGACTGGTACG TCTAGGGCATTGATTTATGGTTTTGAAGTCGGTGATATGGTTTGGGGGAAAGTGAAATCGCATCCGCGGTGGCCGGGGCATATATTTAATGAGGCGTTTG CTTCCTCGTCAGTAAGGCGGACGAGGAGGGAAGGTCATGTGTTGGTTGCTTTTTTCGGGGATAGTAGTTATGGTTGGTTTGATCCGGCGGAGCTTATTCA GTTTGATGTGAATTTCGCAGAGAAATCGCAGCAAACAAATTCCAGGACTTTCATTAAGGCAGTGGAGGAGGCAACGGATGAGGCGAGTAGGAGGAGTGCA CTTGGCTTGGCTTGTAAGTGTAGGAATAAGTATAATTTTAGGCCTGCAAATGTGCCAGGGTATTATGTGGTGGATGTGTCGGATTATGAGCCTGGAGGGG TTTATTCGGCGAGTCAGATTATGAAGGCAAGAGATGGGTTTAAGCCGGGGGAGACTCTTGCTTTTGTGAAGCAGTTGGCTGTCGGGCCTCATGGATGTGA TCAGGAGAGTTTTGAATTTATTAAGAATAAGGCGAGGGCTTTTGCTTTTCGCAATGCTGTTTTTGAAGAGTTTGATGAGACCTATGCACAGGCATTTGCA GTTCAGAGTTCACGGCCTTCTAATGATACCGCTAAGGTACCAAATCAGCTTGCTAAAGAGCCAACTCGAGCTCCTTTGAGTGGTCCATTGGTGATAGCTG AAGCTCCGGGTGGCGAGAAGAGCTCAAAAAAACCTATAAAAGTCAAGGACCATTCAAAAAAAGGCAATTATCTCCTTAAGCGAAGAGATGAGCCAAGTGA GCTGAGAGCTTTTGAAATTGTCCAAAGGCAAGCAGGTTCCTCATCCCTAGCAGTTTATGTGGAGGCTGGTTCATCAGCAGTGGAAGCTGGTGATTTTGTG TTGCAGAAAAGAGCTTCAACCCCCCATATTTCAGCAAAACATGAGCAGTCTGTGCTTATAACCAAAGAAGATGTGGATTCTAGTGAAGATGGAGCTGGCA AAGCAGCGTTAGTCTTAGATCATGCTCCAGGAGATGCAAATGTGTCTCTTGATAAGAAGGGTGCTATGCAAGAAATAGAAGGTGAACCAGGATCAGATGT GGCTGTGGGTCTGATGAGTACAGGGTGGTCTGACTTACCTGGGAAGGAGCAGCTTAAGGGTGTGTCAGATTGTACATATGAAGAGAGTGCAAAAGCATCA GGATCAAATCAAGTTTCTCAGCAAAATGAACTGAGCTTTTCTGCAAGAGCAGAGGTAGACAGTGGATTGAGTAAACTTCAGGATGGTGAGCCAGGTTCAC TTCTTTCACCACTTAATGCCACACAATCTGTTGGAACAAGTACAGGTAGTGGAGTAAAAAAGGTCAAAGTCATTAAACGGCCTGTTGGGGACACCAGTTC GCAGAAGTCTATTATGGGGGGGAAAAGGAAGAAAGAGATACGAGCAGAAACTAATCCTGATCGTCCAAAGAAGCGATTGGCCACTGGAAAAGGTGAGGAA GTGAGAATCTCATTAGGAAAATCCACCCATATCAGTTTTTCTCCTGGAGAGGATTCTCAGCTTAACAGTCAAAAGAAAGATGGTATTGAGTTCGAGCTAC CACAGCTACTTAGTGATTTCCTTGCTCTAGCTCTCGATCCTTTCCATGTTGCAGAAAGAAATAGCCATTCAGTTACAATGCATTTCTTCTTGCGATTCCG GTCCCTCGTTTTCCAGAAAAGCTTGGTTTTGTCACCACCATCCGAGACTGAGGTTGTTGAAGTTCGTGGCACTAAATCCTTGTCCAGTATTGGGGCTTCT GACTATTCTGCCAGTGAGGACACCAGAGGTTTGATACCTTCAAAACCAGCAAAACTCCTTGTCAGACCTAATGATCCAACAAAAGCTGGACGGAAGCGTT TGCCATCTGATCGCCAGGAAGAAATTGCAGCAAAAAGGCAAAAAAAAATTATTCAGTTGAAGTCATTGGCTGCAGAGAAGAAGGCTCAGAGAACTTTGGA TACGCTTGGAGCTGAAGGGAAAGAAACAGTGGCTAGGCAGCGAGCAGAAGGGAAACAGACTGCTGCTACCCAACGGGTGGAAGGAAAACAGCCAGTGGCG CAACCTCCACGAAAGTCAGTCAAACCAGATTCTTTCAAAAAAATGGAGCCTCCAGTTAGAGCTATTGAGCCCACTATGTTGGTGCTGAGGTTCCCTCCTG AGACATCTCTTCCATCTGCCGCGCAGCTGAAGGCAAGGTTTGCTCGATTTGGGTCAATAGATCAGTCTGCAATCCGTGTCTTTTGGAAGTCATCACAATG CCGTGTTGTGTTTCGTCGAAAGCTTGATGCACAGGCAGCTCTTAAATATGCTCTTGGGAACAAATCCTTGTTTGGCGATGTGAATGTAAGGTACAACATT CGTGAAGTAGGAGCTCCTGCTTCAGAGGCACCCGAATCTGACAAGAGCAGAGATGACACTTTTGTTGATGCAGCACAGGCTGAGGATCCTCTTGCTGATT GGCAAGCTGTAGCATTTGCACACCAACCTCCTTCACAGTCAACAGTACAGCTGAAATCTATATTGAAGAGACCAAACGGTGATGAAGCAGCACCAGTAAC TGGTGGTAATGGTAGTAGAGGAAATCGTGTAAAATTCATGTTGGGTGGGGAGGAAACTAATAGTGGAGAGCAAATGATGGTTGGTAATAGAAACAACTTC AACAACAATGCTAGTTTTGCTGATGGTGATGCACCCACTACTTCTGTTGCTATGGGTTTTAGTAGTAAGAACATTCAAAAGGTTTTTCCTCCATCTCCAT TGCCTATTCTTCCCCTCCCTACTCAATTTGCAAAAGCCCCACTTAATTATTCACAACATCATACCGAAGTAGCACCCAGAAACTCGCACAATTTCAACAC CCCTCCTCCAAGTGCCGGACCCAGTACACCAAGCATAGATATTTCGCAGCAGATGCTGAGCCTTTTGACCACTTGCAACGATGTTGTCACCTCCGTGTCA GGCTTGTTAGGCTATGTGCCTTACCACCCTCTTTGA
AA sequence Show only first row Show all	>Potri.013G018700.1 pacid=42811570 polypeptide=Potri.013G018700.1.p locus=Potri.013G018700 ID=Potri.013G018700.1.v4.1 annot-version=v4.1 MIYAELHTKNSNGEEEEPRVSSIESEQQEAKNARVSKIEEEEEPEEEESRVSEVRSERSFDFAVKDEERQDRLALGDYRSLWSEFDDFVANEDNGAMTGT SRALIYGFEVGDMVWGKVKSHPRWPGHIFNEAFASSSVRRTRREGHVLVAFFGDSSYGWFDPAELIQFDVNFAEKSQQTNSRTFIKAVEEATDEASRRSA LGLACKCRNKYNFRPANVPGYYVVDVSDYEPGGVYSASQIMKARDGFKPGETLAFVKQLAVGPHGCDQESFEFIKNKARAFAFRNAVFEEFDETYAQAFA VQSSRPSNDTAKVPNQLAKEPTRAPLSGPLVIAEAPGGEKSSKKPIKVKDHSKKGNYLLKRRDEPSELRAFEIVQRQAGSSSLAVYVEAGSSAVEAGDFV LQKRASTPHISAKHEQSVLITKEDVDSSEDGAGKAALVLDHAPGDANVSLDKKGAMQEIEGEPGSDVAVGLMSTGWSDLPGKEQLKGVSDCTYEESAKAS GSNQVSQQNELSFSARAEVDSGLSKLQDGEPGSLLSPLNATQSVGTSTGSGVKKVKVIKRPVGDTSSQKSIMGGKRKKEIRAETNPDRPKKRLATGKGEE VRISLGKSTHISFSPGEDSQLNSQKKDGIEFELPQLLSDFLALALDPFHVAERNSHSVTMHFFLRFRSLVFQKSLVLSPPSETEVVEVRGTKSLSSIGAS DYSASEDTRGLIPSKPAKLLVRPNDPTKAGRKRLPSDRQEEIAAKRQKKIIQLKSLAAEKKAQRTLDTLGAEGKETVARQRAEGKQTAATQRVEGKQPVA QPPRKSVKPDSFKKMEPPVRAIEPTMLVLRFPPETSLPSAAQLKARFARFGSIDQSAIRVFWKSSQCRVVFRRKLDAQAALKYALGNKSLFGDVNVRYNI REVGAPASEAPESDKSRDDTFVDAAQAEDPLADWQAVAFAHQPPSQSTVQLKSILKRPNGDEAAPVTGGNGSRGNRVKFMLGGEETNSGEQMMVGNRNNF NNNASFADGDAPTTSVAMGFSSKNIQKVFPPSPLPILPLPTQFAKAPLNYSQHHTEVAPRNSHNFNTPPPSAGPSTPSIDISQQMLSLLTTCNDVVTSVS GLLGYVPYHPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G27650			Tudor/PWWP/MBT superfamily pro...		Potri.013G018700 [exp]	0	1
AT5G27650			Tudor/PWWP/MBT superfamily pro...		Potri.005G026800 [exp]	1.00	0.9700
AT5G25520			SPOC domain / Transcription el...		Potri.006G246800 [exp]	2.00	0.9274
AT4G25880		APUM6	pumilio 6 (.1.2.3)		Potri.006G165100 [exp]	2.44	0.9344	Pt-PPD1.4
AT1G30460	C3HZnF	CPSF30, ATCPSF3...	ARABIDOPSIS THALIANA CLEAVAGE ...		Potri.011G089901 [exp]	2.64	0.9123
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Potri.011G024800 [exp]	3.00	0.9336
AT4G16280		FCA	RNA binding;abscisic acid bind...		Potri.010G147900 [exp]	5.00	0.9235
AT4G02400			U3 ribonucleoprotein (Utp) fam...		Potri.014G128300 [exp]	5.47	0.9157
AT2G44710			RNA-binding (RRM/RBD/RNP motif...		Potri.005G116400 [exp]	6.78	0.8926
AT5G13950			unknown protein		Potri.002G237800 [exp]	7.74	0.9062
AT1G36990			unknown protein		Potri.002G089100 [exp]	8.48	0.8908

Compare expression of checked genes

Potri.013G018700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.