Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05420 999 / 0 ACBP4 acyl-CoA binding protein 4 (.1.2) AT5G27630 905 / 0 ACBP5 acyl-CoA binding protein 5 (.1) AT5G04420 417 / 5e-139 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) AT5G18590 219 / 8e-62 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT1G74150 121 / 9e-29 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G18610 118 / 1e-27 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G36360 94 / 5e-20 Galactose oxidase/kelch repeat superfamily protein (.1.2.3.4.5) AT4G04670 84 / 2e-16 Met-10+ like family protein / kelch repeat-containing protein (.1) AT5G48180 80 / 5e-16 NSP5 nitrile specifier protein 5 (.1) AT3G07720 75 / 2e-14 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G026900 [exp] 1182 / 0 AT3G05420 1005 / 0.0 acyl-CoA binding protein 4 (.1.2) Potri.008G031200 [exp] 434 / 1e-145 AT5G04420 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Potri.010G230300 [exp] 420 / 3e-140 AT5G04420 657 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Potri.010G022000 [exp] 245 / 4e-71 AT5G18590 811 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.008G214900 [exp] 240 / 1e-69 AT5G18590 819 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.005G013000 [exp] 140 / 7e-35 AT1G18610 172 / 2e-46 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.013G008200 [exp] 139 / 2e-34 AT1G74150 200 / 3e-56 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.012G062100 [exp] 120 / 2e-28 AT1G18610 631 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.015G059400 [exp] 111 / 2e-25 AT1G18610 622 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029902 [exp] 1008 / 0 AT3G05420 1040 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10004499 [exp] 984 / 0 AT3G05420 1019 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10015176 [exp] 969 / 0 AT3G05420 1024 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10031497 [exp] 961 / 0 AT3G05420 1027 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10037933 [exp] 434 / 1e-144 AT5G04420 648 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10038666 [exp] 427 / 3e-143 AT5G04420 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10028825 [exp] 406 / 7e-135 AT5G04420 622 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10017457 [exp] 399 / 6e-132 AT5G04420 610 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10034163 [exp] 214 / 2e-60 AT5G18590 785 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10043420 [exp] 188 / 1e-50 AT5G18590 611 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0632 [poplar] [flax] FERM_M PF00887 [poplar] [flax] ACBP Acyl CoA binding protein CL0186 [poplar] [flax] Beta_propeller PF13415 [poplar] [flax] Kelch_3 Galactose oxidase, central domain CL0186 [poplar] [flax] Beta_propeller PF13854 [poplar] [flax] Kelch_5 Kelch motif
Representative CDS sequence Show only first row Show all	>Potri.013G018800.2 pacid=42812707 polypeptide=Potri.013G018800.2.p locus=Potri.013G018800 ID=Potri.013G018800.2.v4.1 annot-version=v4.1 ATGGCGATGGCGAGGGCAAGCTCTGGCCCCGCATACCCCGAGCGATTCTATGCAGCTGCAGCATACGCTGGATTTGATGGATCTCACAATTCCACCAGTA CCGTCTCTTCTAAATTCCAAAACGACACCGCTTTGCTCCTCTACGCTCTCTACCAACAGGCGACAGTTGGACCGTGTAATGTGCCGAAACCTAGCAGTTG GAAGGCTGTGGAACAAAGCAAATGGAAAAGCTGGCAGGGGCTTGGAAATATGGCCTCTACAGAAGCAATGCGTCTCTTTGTGAAAATATTGGAGGAAGAT GATCCAAGTTGGTACTATAGAGCATCTAACTCTATTTCAGAAATCTCAGAGTCTGTTGTAGACACACATGTGAATCATTACTCAAAAGATGAGCCTATCA TCAAGAATGGGAACTCTTTCCCAGAGACAAAGACCATTTCTACTGAGAATGGGACTCTTGTAGAAACACAGGATAAAGATGTTGTCTCAGAAGATGTCGG TACAGTTGCTGTCTATGATCAATGGATTGCACCTTCAATAACTGGCCAATCCCCAAAAGCCCGATATGAGCATGGAGCAGCAATTGTTCAAGATAAGATG TATGTATATGGGGGAAATCACAATGGCCGCTATCTCAATGATCTTCATGTGCTGGATTTGAGAAGCTGGGCCTGGTCAAAGGTCAATTTTAAGGTTGAGA ATGAGTCACAGGAGGGACAGTCTCCAGCTAAATTAACTCCCTGTGCTGGCCATTCCTTGATACCATGGGAGAATAAGCTTCTATCAGTTGCTGGACATAC AAAGGATCCTTCTGAAACTATCCAGATCAAGGTATTTCATCTTCAATCTTGTACTTGGTCAACCTTAAAGACTTATGGGAAAGGACCGGTCTCACGTGGT GGTCAATCAGTCACCCTTGTTGGGACAAGCTTAGTGATTTTTGGTGGACAAGATGCAAAGAGATCTCTCTTGAATGATCTGCATATTCTTGACCTAGAAA CCATGACCTGGGATGAAATTGATGCCGTTGGTGTGCCTCCTTCTCCAAGATCTGATCACGCAGCTGCAGTACATGCTGAGCGTTACCTTCTTATTTTTGG TGGAGGCTCGCATGCTACTTGTTTCAATGATCTGCATGTGCTTGATTTGCAAACTATGGAATGGACTAGACCCACACAACAGGGTGAGATACCAACTCCC CGGGCTGGACATGCAGGTGTAACAGTTGGTGAGAATTGGTTTATCGTTGGTGGTGGCGACAACAAGTCTGGGGTCTCTGAAACTGCAGTCCTGAACATGT CTACACTTGTCTGGTCTGTCGTAACTTCTGTTCAAGGGCGTGTTCCTCTTGCCAGTGAGGGTTTGAGTTTAGTCTTGAGCTCTTATAATGGTGAAGATGT TCTTGTATCTTTTGGAGGATATAATGGGCATTACAGCAATGAAGTCAATGTTCTAAAACCAAGCCACAAATCAACCTTGCAATCGAAAATAACAGAGACC CCTGTGCCAGACAGTGTTTCTGCTGTCCATAATGTCACAAACCCCACCAGAGATGTGGACTCTGAGTTGGAAGTGGGGCAAGAAGGCAAAATCAGGGAAA TTGTTATGGATAACATTGACCGAGAGTCCTGGAAATCTAGAGGTGAGGGAACTAGTCTTATAGCCACTTTAAAGGCTGAGAGAGAAGAACTGGATTCTTC ACTTAGCAAGGAGAAGTTGCAGACTCTCCATTTAAAGCAAGAGTTAGCTGATGCCGAGACTCGTAACACTGACCTTTACAAGGAGCTCCAATCTGTACGT GGTCAACTTGCTGCTGAGCAGTCAAGATGTTTCAAACTAGAGGTTGATGTTGCGGAACTACGACAAAAGCTTCAAACAATGGAGACTCTGCAAAAAGAAC TTGAACTCCTGCAACGACAGAAGGCTGCCTCTGAACAGGCCTTAGATGCAAATCATAGGCAGGGATCAGGTGGTGTGTGGGGCTGGCTTGCTGGAACGCC TGGCGGCCAGAAAGGAGACGATGCCTAA
AA sequence Show only first row Show all	>Potri.013G018800.2 pacid=42812707 polypeptide=Potri.013G018800.2.p locus=Potri.013G018800 ID=Potri.013G018800.2.v4.1 annot-version=v4.1 MAMARASSGPAYPERFYAAAAYAGFDGSHNSTSTVSSKFQNDTALLLYALYQQATVGPCNVPKPSSWKAVEQSKWKSWQGLGNMASTEAMRLFVKILEED DPSWYYRASNSISEISESVVDTHVNHYSKDEPIIKNGNSFPETKTISTENGTLVETQDKDVVSEDVGTVAVYDQWIAPSITGQSPKARYEHGAAIVQDKM YVYGGNHNGRYLNDLHVLDLRSWAWSKVNFKVENESQEGQSPAKLTPCAGHSLIPWENKLLSVAGHTKDPSETIQIKVFHLQSCTWSTLKTYGKGPVSRG GQSVTLVGTSLVIFGGQDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHATCFNDLHVLDLQTMEWTRPTQQGEIPTP RAGHAGVTVGENWFIVGGGDNKSGVSETAVLNMSTLVWSVVTSVQGRVPLASEGLSLVLSSYNGEDVLVSFGGYNGHYSNEVNVLKPSHKSTLQSKITET PVPDSVSAVHNVTNPTRDVDSELEVGQEGKIREIVMDNIDRESWKSRGEGTSLIATLKAEREELDSSLSKEKLQTLHLKQELADAETRNTDLYKELQSVR GQLAAEQSRCFKLEVDVAELRQKLQTMETLQKELELLQRQKAASEQALDANHRQGSGGVWGWLAGTPGGQKGDDA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G05420		ACBP4	acyl-CoA binding protein 4 (.1...		Potri.013G018800 [exp]	0	1
AT1G48880		TBL7	TRICHOME BIREFRINGENCE-LIKE 7 ...		Potri.005G060800 [exp]	1.00	0.9776
AT2G21520			Sec14p-like phosphatidylinosit...		Potri.004G157700 [exp]	2.00	0.9681
AT1G60780		HAP13	HAPLESS 13, Clathrin adaptor c...		Potri.010G044700 [exp]	2.00	0.9695
AT1G71270		ATVPS52, TTD8, ...	T-DNA TRANSMISSION DEFECT 8, P...		Potri.006G027100 [exp]	2.64	0.9631	Pt-POK.1
AT1G04430			S-adenosyl-L-methionine-depend...		Potri.002G036732 [exp]	3.16	0.9667
AT5G05010			clathrin adaptor complexes med...		Potri.012G125500 [exp]	4.58	0.9689
AT1G52360			Coatomer, beta' subunit (.1.2)		Potri.001G179200 [exp]	4.69	0.9599
AT2G39630			Nucleotide-diphospho-sugar tra...		Potri.010G204000 [exp]	4.79	0.9543
AT5G36290			Uncharacterized protein family...		Potri.013G086700 [exp]	4.89	0.9631
AT5G18280		ATAPY2	apyrase 2 (.1.2)		Potri.013G053500 [exp]	4.89	0.9626

Compare expression of checked genes

Potri.013G018800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.