Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09060 996 / 0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) AT4G00990 509 / 8e-167 Transcription factor jumonji (jmjC) domain-containing protein (.1) AT1G11950 446 / 6e-142 Transcription factor jumonji (jmjC) domain-containing protein (.1) AT1G62310 432 / 9e-137 transcription factor jumonji (jmjC) domain-containing protein (.1) AT3G07610 380 / 8e-116 IBM1 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) AT4G21430 183 / 2e-47 B160 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1) AT2G23530 59 / 1e-08 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) AT1G67780 52 / 1e-06 Zinc-finger domain of monoamine-oxidase A repressor R1 protein (.1) AT4G37110 51 / 3e-06 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) AT5G38690 48 / 3e-05 Zinc-finger domain of monoamine-oxidase A repressor R1 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G027000 [exp] 1226 / 0 AT1G09060 759 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Potri.004G006200 [exp] 482 / 2e-153 AT1G11950 870 / 0.0 Transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.005G091200 [exp] 473 / 1e-149 AT3G07610 732 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Potri.011G009700 [exp] 459 / 1e-144 AT1G11950 863 / 0.0 Transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.005G082901 [exp] 455 / 6e-142 AT3G07610 702 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Potri.015G012800 [exp] 366 / 6e-107 AT4G00990 508 / 4e-157 Transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.004G032700 [exp] 288 / 3e-82 AT4G21430 522 / 1e-169 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1) Potri.005G026950 [exp] 246 / 1e-75 AT1G09060 167 / 4e-48 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Potri.011G041400 [exp] 256 / 3e-71 AT4G21430 465 / 2e-148 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017092 [exp] 1170 / 0 AT1G09060 962 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Lus10037812 [exp] 1163 / 0 AT1G09060 957 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Lus10020033 [exp] 454 / 7e-145 AT1G62310 843 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Lus10015260 [exp] 446 / 2e-141 AT3G07610 627 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10002391 [exp] 449 / 9e-141 AT3G07610 607 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10006741 [exp] 376 / 9e-116 AT4G21430 440 / 1e-141 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1) Lus10027890 [exp] 320 / 2e-93 AT3G07610 578 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10020084 [exp] 245 / 2e-67 AT4G21430 529 / 2e-172 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1) Lus10025380 [exp] 232 / 3e-64 AT3G07610 516 / 8e-170 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10004602 [exp] 205 / 5e-58 AT3G07610 313 / 1e-97 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF02373 [poplar] [flax] JmjC JmjC domain, hydroxylase CL0029 [poplar] [flax] PF08879 [poplar] [flax] WRC WRC CL0029 [poplar] [flax] PF10497 [poplar] [flax] zf-4CXXC_R1 Zinc-finger domain of monoamine-oxidase A repressor R1
Representative CDS sequence Show only first row Show all	>Potri.013G019000.4 pacid=42812635 polypeptide=Potri.013G019000.4.p locus=Potri.013G019000 ID=Potri.013G019000.4.v4.1 annot-version=v4.1 ATGGATCACCTAAGATCATCCTCAGCGAATGGTGAGGAAAATGGTGGTGGGATTCCTGATGACTTGCGCTGCAAGAGGTCAGATGGGAAGCAGTGGAGAT GTACTGCCATGTCTATGCCAGATAAAACTGTTTGTGAGAAGCATTATATCCAGGCAAAGAAGAGGGCAGCTAATTCTGCGTTAAGAGCCAGTCTGAAGAA AGCCAAAAGGAAATCAATAGGTGAAAGCGATTTTTACTTGGAGAGTAAGAGTGATGATTTTGACATGCCACTCAGGAACATGAAAGTTGAGGAGGATCAG CCACTTTCGGTCTCATCAAAGAGGTACAAGGAGAAAGTACCTAAAAGTCAGTCTCGCTATTCTCCAGAAACACTTATAAGGAGCTTGCGTGGTCAGAATT CTCTAAAACTAAACGATGATTCCCAAAGAGATTTCGAGTTTGAAGAGAATTGGAGGTCATATAAGACGACACCTCGTTCAACAATGGAATCATCCAGGAG TAGATCACAAAGGAGTTTTGATGCCAGTGCTATGACAGTGAGTGAAACTGTCACAGAATACTCAGATGCAAGCACCGATGCTTCTGAAGACACTGGTGGG CAAACTTGTCATCAGTGCCGGAGGAATGACAGAAATAGTGTTACTTGGTGTCTCAAATGTGACAAGAGAGGTTTTTGTGATAGCTGTATCTCAGAATGGT ACTCAGACATTCCATTAGAAGAAATTGAGAAGGTTTGTCCTGCATGTCGCGGGATCTGCAATTGCAGGGGTTGCTTACGAGGAGATAATATGGTAAAGGT AAGAATACGGGAAATACCTGTTCTTGACAAGTTGCAATATCTCCACTGCCTATTATCTTCAGTGCTTCCTATAGTTAAGCAGATCCATCAAGAACAATGC TTTGAAGTAGAGCTTGAACAAAGGCTGCGTGGAACTGATATAGATCTTGTCCGGGCCAAATTGAATGCAGATGAGCAGATGTGCTGCAATATATGTAGGA TACCCATTATTGATTATCATCGGCATTGTGCAAATTGCTCGTATGATCTGTGCCTTCATTGCTGTCAAGATCTTCGAGGAGCATCTAAACATGGTGTTGA AAATGAAGTGGATGATAATCAGATTGATGGGAGAAGTCAAGACAATGAGACTCCATTAGAACCAGTGAGAGAACCACAAGTAAGACTAAAGTTATCAGAT AAGTACCAAGGCTGGAAGGCAAACAATGATGGCAGTATTCCATGCCCTCCGAAGGAGCACGGTGGTTGTAATTACTCATCATTGAACCTAAGCCGTATTT TCAAGATGAATTGGGCAGCAAAACTTGTGAAAAATGTGGAGGAAATGGTCAGTGGCTGTAAGGTTTATGATGCTGGCACCCCACAGAAATCCGGGTTGAA TGATTCCACACTCTGCCAGTATGCTCACAGAGAGGACAGTGATGATAATTTCTTATATTGCCCCTTATCTGAAGATGTAAAAGCTGATGGGATAAACAAG TTTAGAAAACACTGGGTTCGAGGTGAACCTGTTATTGTGAAGCAGGTATTTGACAGCTCATCCATATCAAGCTGGGATCCAATGGCTATTTGGAGGGGGA TCCGGGAAACATCAGATGAGAAAAAGAAAGGTGAAAACAGAATGGTGAAGGCCATAGATTGCTTACACTGGTCTGAGGTTGATATTGATCTTGATCAGTT TATCCGAGGATACTCAGAGGGACGAATCAGGGAAAATGGTTCACCAGAGATGTTGAAGTTGAAGGATTGGCCTTCCCCTAGTGCTTCTGAAGAGTTCTTA TTATACCAGAGACCTGAATCTATCAGTAAACTGCCTTTCCTTGAATTTATCCATTCAAGGGTGGGTGTTCTAAATGTTGCTGCAAAGTTGCCTCATTACT CTTTGCAGAATGATGTAGGACCCAAGATTTGTATATCTTATGGGAGCCATGAGGATCTCGGTGTGGGTGATTCTGTAATCAAACTTCATTTCAAAACGCG TGACATGGTGTATCTATTGGTACATACATGCGAAGCAAAGACAAAAGGTAGCCAGGAGAGTAGCTCAATTGACCCAGAAAAAAGCTTGGATGATGGAAGG TTGCCTGATATATCACTCGATGGGCATGATATACAAGATGAAGTGAAGACAGCTGCAGATAAGGATGAGAAAATGGAGGATCAAGAGGTTGCTAATACCA CTAGTATTGAAGAGATTGACAGAATTGAAGATCATGGGGCTGAAAGAACCACAGGTGTTCAAGAGGTTGAAAGAATGGAAACCACCAGAGTGGAAGAGGT TGAGGGAATGGAGGATCAGCAGTTTAAGAAAGATAGTGAAGATATCCCTGTAGAGGTTTGTCCAGGAGTTAGTTGGGATGTCTTTCGTCGGCAGGATATT CCAAAGTTAATTGATTATTTGAGAACATGCTATAAGGACCTTTGGAAGCCTGACAACATAGTGAATGATTTTGTCACAGATCCCCTTTATGACGGAACAG TTTTCCTAAATGCGTTTCATAAGAGACAATTGAAGGAAGAGTTTGGAGTTGAACCATGGTCATTTGAACAACATTTGGGGCAAGCTGTATTCGTCCCAGC TGGATGCCCTTTCCAAGCGAGGAATCTTCAGTCCAATGTTCAGTTGGGCCTTGATTTCTTATCTCCTGAAAGTCTGGGGGTGTCTGCTAGATTGGCAGAA GAAATTCGCTGTCTTCCAAATGACCATGAAGCAAAACTTCAAGTTTTGGAGGTGGGTAAGATGTCACTCTATGCTGCTAGTTCAGCCATTAAAGAAGTCC AGAAATTGGTGCTTGATCCTAAACTTGGTGCTGAAATTGGATTCGAGGATCGCAATTTAACTGCAGCAGTTGCTGAGAACTTGGAGAAAGGTGCTAAGCC AAGACAGATAAGTTGTTCTTAA
AA sequence Show only first row Show all	>Potri.013G019000.4 pacid=42812635 polypeptide=Potri.013G019000.4.p locus=Potri.013G019000 ID=Potri.013G019000.4.v4.1 annot-version=v4.1 MDHLRSSSANGEENGGGIPDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYIQAKKRAANSALRASLKKAKRKSIGESDFYLESKSDDFDMPLRNMKVEEDQ PLSVSSKRYKEKVPKSQSRYSPETLIRSLRGQNSLKLNDDSQRDFEFEENWRSYKTTPRSTMESSRSRSQRSFDASAMTVSETVTEYSDASTDASEDTGG QTCHQCRRNDRNSVTWCLKCDKRGFCDSCISEWYSDIPLEEIEKVCPACRGICNCRGCLRGDNMVKVRIREIPVLDKLQYLHCLLSSVLPIVKQIHQEQC FEVELEQRLRGTDIDLVRAKLNADEQMCCNICRIPIIDYHRHCANCSYDLCLHCCQDLRGASKHGVENEVDDNQIDGRSQDNETPLEPVREPQVRLKLSD KYQGWKANNDGSIPCPPKEHGGCNYSSLNLSRIFKMNWAAKLVKNVEEMVSGCKVYDAGTPQKSGLNDSTLCQYAHREDSDDNFLYCPLSEDVKADGINK FRKHWVRGEPVIVKQVFDSSSISSWDPMAIWRGIRETSDEKKKGENRMVKAIDCLHWSEVDIDLDQFIRGYSEGRIRENGSPEMLKLKDWPSPSASEEFL LYQRPESISKLPFLEFIHSRVGVLNVAAKLPHYSLQNDVGPKICISYGSHEDLGVGDSVIKLHFKTRDMVYLLVHTCEAKTKGSQESSSIDPEKSLDDGR LPDISLDGHDIQDEVKTAADKDEKMEDQEVANTTSIEEIDRIEDHGAERTTGVQEVERMETTRVEEVEGMEDQQFKKDSEDIPVEVCPGVSWDVFRRQDI PKLIDYLRTCYKDLWKPDNIVNDFVTDPLYDGTVFLNAFHKRQLKEEFGVEPWSFEQHLGQAVFVPAGCPFQARNLQSNVQLGLDFLSPESLGVSARLAE EIRCLPNDHEAKLQVLEVGKMSLYAASSAIKEVQKLVLDPKLGAEIGFEDRNLTAAVAENLEKGAKPRQISCS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09060			Zinc finger, RING-type;Transcr...		Potri.013G019000 [exp]	0	1
AT3G14470			NB-ARC domain-containing disea...		Potri.004G170700 [exp]	2.00	0.8774
AT4G12070			unknown protein		Potri.003G207600 [exp]	2.82	0.8565
AT5G43990		SDG18, SUVR2	SET DOMAIN PROTEIN 18, SET-dom...		Potri.014G192500 [exp]	3.16	0.8545
AT3G06620			PAS domain-containing protein ...		Potri.010G146000 [exp]	3.46	0.8429
AT3G18640	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.005G061100 [exp]	4.89	0.8569
AT2G22010		RKP	related to KPC1 (.1.2)		Potri.007G081900 [exp]	5.47	0.8540
AT4G38180	FAR1_related	FRS5	FAR1-related sequence 5 (.1)		Potri.012G137500 [exp]	8.94	0.8317
AT3G19190		ATATG2	autophagy 2 (.1)		Potri.004G141700 [exp]	9.16	0.8530
AT5G28530	FAR1_related	FRS10	FAR1-related sequence 10 (.1)		Potri.016G007300 [exp]	10.09	0.8297
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Potri.018G150700 [exp]	10.48	0.8439

Compare expression of checked genes

Potri.013G019000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.