Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50700 326 / 9e-107 C2H2ZnF ATIDD2 indeterminate(ID)-domain 2 (.1) AT5G44160 322 / 7e-105 C2H2ZnF AtIDD8, NUC nutcracker, INDETERMINATE DOMAIN 8, C2H2-like zinc finger protein (.1) AT1G03840 317 / 1e-102 C2H2ZnF MGP Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) AT5G66730 306 / 1e-98 C2H2ZnF IDD1, ENY INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) AT1G55110 301 / 5e-97 C2H2ZnF ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7, ATIDD7, ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7 indeterminate(ID)-domain 7 (.1) AT1G14580 295 / 1e-94 C2H2ZnF C2H2-like zinc finger protein (.1.2) AT4G02670 292 / 2e-94 C2H2ZnF ATIDD12 indeterminate(ID)-domain 12 (.1) AT2G02080 295 / 4e-94 C2H2ZnF ATIDD4 indeterminate(ID)-domain 4 (.1), indeterminate(ID)-domain 4 (.2) AT3G13810 294 / 1e-93 C2H2ZnF ATIDD11 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3) AT3G45260 292 / 1e-93 C2H2ZnF C2H2-like zinc finger protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G027200 [exp] 796 / 0 AT1G03840 300 / 7e-96 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Potri.002G208444 [exp] 467 / 3e-160 AT3G50700 311 / 2e-100 indeterminate(ID)-domain 2 (.1) Potri.014G132700 [exp] 370 / 1e-122 AT1G03840 232 / 2e-69 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Potri.001G069948 [exp] 322 / 1e-104 AT3G50700 334 / 5e-110 indeterminate(ID)-domain 2 (.1) Potri.002G048000 [exp] 320 / 3e-104 AT4G02670 362 / 6e-122 indeterminate(ID)-domain 12 (.1) Potri.003G036900 [exp] 322 / 5e-104 AT1G55110 372 / 3e-124 indeterminate(ID)-domain 7 (.1) Potri.007G135000 [exp] 311 / 6e-101 AT1G03840 435 / 3e-149 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Potri.017G017100 [exp] 311 / 7e-101 AT1G03840 459 / 1e-158 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Potri.014G180600 [exp] 311 / 2e-100 AT3G50700 368 / 3e-123 indeterminate(ID)-domain 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041356 [exp] 353 / 1e-111 AT1G03840 332 / 2e-103 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Lus10010820 [exp] 311 / 3e-103 AT3G50700 349 / 2e-119 indeterminate(ID)-domain 2 (.1) Lus10036573 [exp] 316 / 6e-102 AT1G03840 292 / 2e-93 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Lus10007168 [exp] 315 / 2e-101 AT5G66730 386 / 2e-129 INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) Lus10029904 [exp] 308 / 7e-100 AT1G55110 337 / 6e-112 indeterminate(ID)-domain 7 (.1) Lus10004497 [exp] 304 / 4e-98 AT1G55110 341 / 5e-113 indeterminate(ID)-domain 7 (.1) Lus10008396 [exp] 305 / 3e-97 AT3G13810 339 / 1e-110 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3) Lus10041723 [exp] 300 / 5e-96 AT3G50700 489 / 1e-170 indeterminate(ID)-domain 2 (.1) Lus10004840 [exp] 298 / 1e-94 AT3G13810 337 / 1e-110 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3) Lus10019927 [exp] 288 / 1e-91 AT5G03150 386 / 6e-130 JACKDAW, C2H2-like zinc finger protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [poplar] [flax] C2H2-zf PF12171 [poplar] [flax] zf-C2H2_jaz Zinc-finger double-stranded RNA-binding
Representative CDS sequence Show only first row Show all	>Potri.013G019200.1 pacid=42811000 polypeptide=Potri.013G019200.1.p locus=Potri.013G019200 ID=Potri.013G019200.1.v4.1 annot-version=v4.1 ATGTCAAATACCACAGGTGATGGCACTGGCAGCTTCTCTTCTGGGGGTACTGGTGGAGATGAAGTTCACTTGAACTCAAGTGCTGCTGCTGCTGCTGCTA ACAGCAATGGCTCCACAATCACTCAACAACCTCCGCTCAAGAGGAAAAGAAATCTCCCAGGAAATCCAGATCCCAGTGCTGAAGTTATTGCTCTATCACC AAACACTCTTATGGCTACAAATCGATTTGTATGTGAGATTTGCAACAAAGGATTCCAAAGGGACCAGAATCTTCAATTGCATCGGCGAGGCCATAATCTA CCATGGAAGCTAAAGCAAAGAACAACTGCTGAAATCCGAAAAAGGGTTTATGTTTGTCCAGAACCTTCATGTGTCCATCACAATCCGGCTCGAGCATTAG GCGATCTTACAGGGATTAAGAAGCATTTTTGTCGAAAACATGGAGAAAAGAAGTGGAAATGCGATAAATGCTCAAAGAAATATGCAGTGCAGTCGGATTG GAAAGCTCATGTAAAGACTTGTGGCACTAAGGAATACAAATGTGATTGTGGCACCATATTCTCCAGGAGGGATAGTTTCATTACTCATAGGGCTTTCTGC GATGCCCTAGCTGAAGAAAATACCAAAGCAAATCAAGGATTGATGCCCAACATGGAACCAAACTTACAAGGCCAAGTCTCCAACCTCATACCCTCCATGG CCATCAACAATAATCCAAACCAATCCACCATGATGTCTAGTTTTAACCATCTAGACGCTAAGAACCCACTGTCATTACCTCAAGAACTCATGCCGACACC ACCTAAACCCTCATCGGGAAGCATGTTTTCAAATGGCACCACGGGCCTTTTTGGTGGTTCAAGAAGCATGTCACCATCCCTTCAGTTGAATGCAAATTCA TCAACAATCTTTGAAGGAAACGGCCTTCATAATTTATCTGGCTCGGCATCAATGTCAGCGACAGCATTGTTGCAAAAAGCAGCTCAGATGGGTGCGACTG CAAGTAGTAATAATGTGAGCTCTCCCATGATGCAAAAGAGCTTTGTCACAAGCATGGCACCCCCAACTTTTGGTACAATGCATACCCAAAATGACCAATC TCATGTGATAGGTGGTGACGATGGATATGCTAACCAGTTTTTCAGTGCGAATGGTGGGGTTGAGAACTCAGTATTGAATGACATGGGGATTTTCAGTGCA GTTTTAGATCAAAACAATTCATTATTTAAGACTATGGAGCATGCTAGTAGCAACAATGAGAATGTTTTTCAAGGTGCAAATTCAAATCCTGGTTTAAGTA GTCCAACAAGTGGAGCTAATCCAAGTGGTTTATCAAGATTTAGTACTGGGGATGTAATGACTGTTGATTTCTTGGGGTTGGGAGGATCTAGACAAAGGAA TCTGCATCAACAGCATAATCATCAAGAAATGGAGTTTACTAGAGGAATTAGTCATCCAAGAATGCAAGGGCTGAACCACTTTGAGCAAGCAACAGCACTA AAGAAACCCATGTGGGATGTTTGA
AA sequence Show only first row Show all	>Potri.013G019200.1 pacid=42811000 polypeptide=Potri.013G019200.1.p locus=Potri.013G019200 ID=Potri.013G019200.1.v4.1 annot-version=v4.1 MSNTTGDGTGSFSSGGTGGDEVHLNSSAAAAAANSNGSTITQQPPLKRKRNLPGNPDPSAEVIALSPNTLMATNRFVCEICNKGFQRDQNLQLHRRGHNL PWKLKQRTTAEIRKRVYVCPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHVKTCGTKEYKCDCGTIFSRRDSFITHRAFC DALAEENTKANQGLMPNMEPNLQGQVSNLIPSMAINNNPNQSTMMSSFNHLDAKNPLSLPQELMPTPPKPSSGSMFSNGTTGLFGGSRSMSPSLQLNANS STIFEGNGLHNLSGSASMSATALLQKAAQMGATASSNNVSSPMMQKSFVTSMAPPTFGTMHTQNDQSHVIGGDDGYANQFFSANGGVENSVLNDMGIFSA VLDQNNSLFKTMEHASSNNENVFQGANSNPGLSSPTSGANPSGLSRFSTGDVMTVDFLGLGGSRQRNLHQQHNHQEMEFTRGISHPRMQGLNHFEQATAL KKPMWDV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G50700	C2H2ZnF	ATIDD2	indeterminate(ID)-domain 2 (.1...		Potri.013G019200 [exp]	0	1
AT1G34320			Protein of unknown function (D...		Potri.013G115300 [exp]	11.22	0.7465
AT5G65200		ATPUB38	ARABIDOPSIS THALIANA PLANT U-B...		Potri.012G076400 [exp]	11.57	0.7763
AT3G23160			Protein of unknown function (D...		Potri.008G164700 [exp]	12.60	0.7647
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Potri.005G219100 [exp]	13.49	0.7389
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Potri.014G014100 [exp]	20.39	0.7573
AT4G24730			Calcineurin-like metallo-phosp...		Potri.012G089300 [exp]	23.02	0.7428	WR3.1
AT1G64280		SAI1, NIM1, NPR...	SALICYLIC ACID INSENSITIVE 1, ...		Potri.006G148100 [exp]	23.40	0.7649	NPR1.1
AT3G60380			unknown protein		Potri.002G136600 [exp]	31.19	0.7491
AT1G79840	HD	GL2	GLABRA 2, HD-ZIP IV family of ...		Potri.001G184100 [exp]	32.40	0.7499	GL2.2
AT3G07565			Protein of unknown function (D...		Potri.017G023300 [exp]	46.09	0.7371

Compare expression of checked genes

Potri.013G019200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.