Plant FIBer expression Database

Potri.013G019300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G09040 384 / 9e-119 unknown protein
AT1G09050 367 / 3e-112 unknown protein
AT2G47820 353 / 2e-108 unknown protein
AT1G55050 324 / 2e-96 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G027300
[exp]
1509 / 0 AT1G09040 386 / 1e-119 unknown protein
Potri.010G023900
[exp]
427 / 2e-135 AT2G47820 381 / 2e-119 unknown protein
Potri.008G210200
[exp]
425 / 1e-134 AT2G47820 375 / 4e-117 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004495
[exp]
538 / 3e-174 AT1G09050 376 / 1e-113 unknown protein
Lus10029906
[exp]
524 / 4e-169 AT1G09040 385 / 6e-117 unknown protein
Lus10037506
[exp]
391 / 2e-122 AT1G09050 359 / 7e-112 unknown protein
Lus10006519
[exp]
370 / 1e-114 AT1G09040 350 / 1e-108 unknown protein
PFAM info
Representative CDS sequence
>Potri.013G019300.3 pacid=42811119 polypeptide=Potri.013G019300.3.p locus=Potri.013G019300 ID=Potri.013G019300.3.v4.1 annot-version=v4.1
ATGGAGATAGAATCAAATCAACTGGATCACGATTGCAATTCCACTGAAGAATCATCTGTTATGCAGATAGTTCCTCCAAGATCTCCTGAGATAAGTGGTG
TGTGTGGGCATCCGATAGAGAACCCTCGAGTTGGTGATGAGTATCAGGCAGAGGTTCCATCCATGATATCGCAATCAAAGCATCTGCAGCTTCTAACAAT
TCCTTCTGGTTCAGATGGAATATTTGAGGCTTCCCATTCCTTTCTAATAGGTTTACCTGTCCCAGTTATGTGGGTGGATAATAATAAGGTAAACAATGGA
GAGGATAGAGGGTGTGGATCTCTGAGCCACCCTGGGGATGCAGTTCTTACAGATGAGTCCAGCAAATCTAGAAAAAGCAAAAAGCATTGTACTATGAAGA
AGGAAGATTCAGAGCTCAATGCTGAATTATTGGATGATGGAAAGGAATTGAAACCAGCAACCTTTCAATCGAATGTGTCAGGTGAAGATAACTTAGATCA
GCCGTGTAAAAGAGAAAGCTATATCCCTCTTCCTGGTTTACTGCATAACCCTTGGAAAGATGCTGATGTAGATGGTTTTATTCTTGGTTTATATATATTT
GGAAAAAATCTTGTCCAGATAAAGAGATTCATAGACAAGGAGATGGGGGAAATACTGTCATTTTATTATGGGAAATTTTACAAGTCTGATGCATATCGTA
GATGGTCAGATACCCGAAAGACAAAAAGAAAGAAATGTGTATGTGGACATAGAATTTTTACAGGGTGGAGGCAACAGGAACTGTTCTCTCGTCTGGATCC
GCATGTCCCAGTGCATTTTCGAAATACTTTCCAAGAGGTCTCTTTGGAATTTACAAAGGGTAAAATTTCACTAGAAGATTATGTATTCAATTTAAAGGCC
ATTGTTGGCATCCAAGTTTTTGTAGAAGCTGTTGGTATTGGTAAGGGGAAAGATGATCTCACAGGTCTTGCCATGGAACCTGTAAAGGGCAATCCATTGT
TTCCTGATTGTCCAGTAGGCAAAGATTGCTCCTCCCTTACAGCCAGTGACATAATCAAGCTTTTGACTGGGGGCTTTCGTTTGAGCAAAGGTCGTTGCAA
TGACATTTTTTGGGAAGCTGTTTGGCCCCGTTTGCTGGCAAGAGGGTGGCACTCTGAACAACCGAAGAATCAGGGTTATGTTGATACCAGTCACTCTCTT
GTTTTTCTCATTCCTGGCATTAAGAAGTTCTCAAGAAGGAAACTTGTGAAAGGTAATCACTACTTTGACTCTGTCAGTGATGTTTTGAGCAAAGTTGCAT
CAGAACCAACACTTATTGAGCTTGAAGCTGAAGAAACTAGAGGCAGCATCTGCAATGAGGAGGATGGCTGGGATATAGGAGTACCGTCAAGCCTGGATGA
TCAATCCATTTGTCAGCCCCGTCATTATCTTAAACCTCAGGTTTCTAAACGCAATCTGAACCATGTGAAGTTCACTGTTGTGGATTCTAGTTTGGGTGGA
GGGAAAAAATTATCCAAGGTGAAAGAAATGAGATATTCATTAGATGATTTGAAAGTTATGTCCTTGTTCACCACTCTTTCAAGTAGAACTCCGAGGATTT
TTTCAGAGAGCTCACCGGATAAAAATGATCTGGATGCTCTTGGTATGTCATTGGATGGTGAAAAGAAAATGAATAACGTAGACTGCAATGAGGGTAGTAC
ATCTCATGCATGCAGCTCAAACTCTACAAAGTTCACCATTGTGGATACCAGTTTGGTCCATGGAGGAATATCAGTAAGGCCAAGAGAACTAAGATGTTTA
CCAGTTGAGTATGGCCCTGCTTCTGAAATGACCAATTCAACTGAGAATGAAGCGGATTCCTCTGACAATTCACCGGTTCAGCATGCACCAGATGCAGCAA
ATAGATCCGACCATAGAAAGGGTATAATTGACAGGAGCATCCATGACAAAAGCTCTGAATTGAAAGGACACCGGTCAAGGGGAACTTTAAAGCACCAATC
AAGTCGAAGAGCAAAATCCAGACAGTCAAATAACTTAGTCCCTCTGGTGAAACGACGGAGACTAACTGCTTGTTCCGATACAGAGATAAGCAATGTCATT
GAGAATTTCTCTGGAGGCATTCGGTCAAAACAAGTGGGAATTTGTTGTGCTTTGAAAGCACCAAGTGCTGGTGGTAATGCCTTTAAAGCCCGTGGTCACC
GAAAGAAGTTGTCATCAACTAAACCCTCGGTAAGAGGTGGTCCAGAAGAGGCGAATGGTGGAGGGATGTTGAGTGCAAATTGTTTTGGTATGAGAAAGTC
TCGTAGAGAAAATGTGGAACATCAATCCCCGCTTTTGATTGATCTGAATCTACCTCAAATTGCTTTAGCCTCTGATAATGGGGATGTGGTGCCGATGGAG
GTGGAAAACATCCAAAGAATAAATGCCAATGATACAAGTTTTCCATCTCCATTGGATAATCCTAACGCCGACGCATTGAGCACCTCTGTTGATCTTGCTT
CTGCAGCAGAGGAACCTGATATGAACTCCAGAAGACACAGCACAAGAAGCCGACCAATGACCATTAAAGCATTGGCAGCTCTTGAATATGGGTTCTTGGA
AGTGAAGAAGACGCCAAAGTGCACTGGAGTTCGTACACACAAGAAATCCCATTTTAAAGTCCTATCTCAGGTCCCACAACAAAGTCAAAGTAAAATAAAG
TCATGCAATGTCGGCATTGGTACTGGGGATCCGAATGAAGAAAGGGATGCTAGTGGAGCCTTCATTGTTGAATGA
AA sequence
>Potri.013G019300.3 pacid=42811119 polypeptide=Potri.013G019300.3.p locus=Potri.013G019300 ID=Potri.013G019300.3.v4.1 annot-version=v4.1
MEIESNQLDHDCNSTEESSVMQIVPPRSPEISGVCGHPIENPRVGDEYQAEVPSMISQSKHLQLLTIPSGSDGIFEASHSFLIGLPVPVMWVDNNKVNNG
EDRGCGSLSHPGDAVLTDESSKSRKSKKHCTMKKEDSELNAELLDDGKELKPATFQSNVSGEDNLDQPCKRESYIPLPGLLHNPWKDADVDGFILGLYIF
GKNLVQIKRFIDKEMGEILSFYYGKFYKSDAYRRWSDTRKTKRKKCVCGHRIFTGWRQQELFSRLDPHVPVHFRNTFQEVSLEFTKGKISLEDYVFNLKA
IVGIQVFVEAVGIGKGKDDLTGLAMEPVKGNPLFPDCPVGKDCSSLTASDIIKLLTGGFRLSKGRCNDIFWEAVWPRLLARGWHSEQPKNQGYVDTSHSL
VFLIPGIKKFSRRKLVKGNHYFDSVSDVLSKVASEPTLIELEAEETRGSICNEEDGWDIGVPSSLDDQSICQPRHYLKPQVSKRNLNHVKFTVVDSSLGG
GKKLSKVKEMRYSLDDLKVMSLFTTLSSRTPRIFSESSPDKNDLDALGMSLDGEKKMNNVDCNEGSTSHACSSNSTKFTIVDTSLVHGGISVRPRELRCL
PVEYGPASEMTNSTENEADSSDNSPVQHAPDAANRSDHRKGIIDRSIHDKSSELKGHRSRGTLKHQSSRRAKSRQSNNLVPLVKRRRLTACSDTEISNVI
ENFSGGIRSKQVGICCALKAPSAGGNAFKARGHRKKLSSTKPSVRGGPEEANGGGMLSANCFGMRKSRRENVEHQSPLLIDLNLPQIALASDNGDVVPME
VENIQRINANDTSFPSPLDNPNADALSTSVDLASAAEEPDMNSRRHSTRSRPMTIKALAALEYGFLEVKKTPKCTGVRTHKKSHFKVLSQVPQQSQSKIK
SCNVGIGTGDPNEERDASGAFIVE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G09040 unknown protein Potri.013G019300
[exp]
0 1
AT5G67240 SDN3 small RNA degrading nuclease 3... Potri.007G048000
[exp]
18.73 0.7043
AT2G03060 MADS AGL30 AGAMOUS-like 30 (.1.2) Potri.010G167300
[exp]
18.73 0.6787
AT2G18500 OFP ATOFP7, OFP7 ARABIDOPSIS THALIANA OVATE FAM... Potri.007G028000
[exp]
64.49 0.6554
AT2G37250 ADK, ATPADK1 adenosine kinase (.1) Potri.010G215300
[exp]
108.44 0.6363
AT3G19360 C3HZnF Zinc finger (CCCH-type) family... Potri.004G169500
[exp]
117.96 0.6354
AT2G43490 Ypt/Rab-GAP domain of gyp1p su... Potri.007G132900
[exp]
125.49 0.6187
AT4G09510 A/N-InvI, CINV2 alkaline/neutral invertase I, ... Potri.019G082000
[exp]
145.94 0.6014 Pt-INV1.2
AT4G11420 ATTIF3A1, ATEIF... eukaryotic translation initiat... Potri.013G011900
[exp]
153.08 0.6176
AT5G16890 Exostosin family protein (.1) Potri.019G049800
[exp]
171.94 0.5877
AT3G57150 ATNAP57, ATCBF5... homologue of NAP57 (.1) Potri.006G044100
[exp]
195.49 0.5917 Pt-NAP57.2

Potri.013G019300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.