Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09030 155 / 1e-49 CCAAT NF-YB4 "nuclear factor Y, subunit B4", nuclear factor Y, subunit B4 (.1) AT2G47810 145 / 2e-45 CCAAT NF-YB5 "nuclear factor Y, subunit B5", nuclear factor Y, subunit B5 (.1) AT4G14540 130 / 2e-39 CCAAT NF-YB3 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) AT3G53340 130 / 5e-39 CCAAT NF-YB10 "nuclear factor Y, subunit B10", nuclear factor Y, subunit B10 (.1) AT5G47640 129 / 1e-38 CCAAT NF-YB2, HAP3b "nuclear factor Y, subunit B2", nuclear factor Y, subunit B2 (.1) AT2G38880 128 / 1e-38 CCAAT ATNF-YB1, ATHAP3, HAP3A "nuclear factor Y, subunit B1", HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 3A, HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 3, NUCLEAR FACTOR Y SUBUNIT B1, HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 3, nuclear factor Y, subunit B1 (.1.2.3.4.5.6.7.8) AT2G13570 129 / 2e-38 CCAAT NF-YB7 "nuclear factor Y, subunit B7", nuclear factor Y, subunit B7 (.1) AT2G37060 125 / 2e-37 CCAAT NF-YB8 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) AT5G47670 116 / 2e-33 CCAAT NF-YB6, L1L "nuclear factor Y, subunit B6", LEC1-LIKE, nuclear factor Y, subunit B6 (.1.2) AT1G21970 112 / 2e-31 CCAAT AtLEC1, NF-YB9, EMB212, LEC1 NUCLEAR FACTOR Y, SUBUNIT B9, LEAFY COTYLEDON 1, EMBRYO DEFECTIVE 212, Histone superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G019600 [exp] 194 / 8e-65 AT1G09030 171 / 9e-56 "nuclear factor Y, subunit B4", nuclear factor Y, subunit B4 (.1) Potri.005G027400 [exp] 184 / 1e-60 AT1G09030 175 / 3e-57 "nuclear factor Y, subunit B4", nuclear factor Y, subunit B4 (.1) Potri.014G132600 [exp] 162 / 6e-52 AT2G47810 186 / 9e-61 "nuclear factor Y, subunit B5", nuclear factor Y, subunit B5 (.1) Potri.008G210300 [exp] 156 / 9e-50 AT2G47810 176 / 1e-57 "nuclear factor Y, subunit B5", nuclear factor Y, subunit B5 (.1) Potri.005G083400 [exp] 132 / 1e-39 AT4G14540 190 / 1e-61 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.007G082200 [exp] 132 / 2e-39 AT4G14540 186 / 5e-60 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.005G065300 [exp] 132 / 2e-39 AT2G13570 201 / 2e-65 "nuclear factor Y, subunit B7", nuclear factor Y, subunit B7 (.1) Potri.016G006100 [exp] 130 / 6e-39 AT4G14540 212 / 8e-71 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.006G005500 [exp] 130 / 6e-39 AT4G14540 208 / 2e-69 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004493 [exp] 176 / 2e-57 AT1G09030 180 / 2e-59 "nuclear factor Y, subunit B4", nuclear factor Y, subunit B4 (.1) Lus10029908 [exp] 175 / 2e-57 AT1G09030 179 / 7e-59 "nuclear factor Y, subunit B4", nuclear factor Y, subunit B4 (.1) Lus10036575 [exp] 151 / 3e-47 AT2G47810 177 / 2e-57 "nuclear factor Y, subunit B5", nuclear factor Y, subunit B5 (.1) Lus10041355 [exp] 150 / 5e-47 AT2G47810 176 / 7e-57 "nuclear factor Y, subunit B5", nuclear factor Y, subunit B5 (.1) Lus10004796 [exp] 136 / 1e-41 AT2G47810 152 / 4e-48 "nuclear factor Y, subunit B5", nuclear factor Y, subunit B5 (.1) Lus10033477 [exp] 133 / 1e-39 AT2G13570 211 / 4e-69 "nuclear factor Y, subunit B7", nuclear factor Y, subunit B7 (.1) Lus10020899 [exp] 133 / 2e-39 AT2G13570 213 / 9e-70 "nuclear factor Y, subunit B7", nuclear factor Y, subunit B7 (.1) Lus10001177 [exp] 130 / 9e-39 AT4G14540 225 / 9e-76 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Lus10001751 [exp] 128 / 5e-38 AT4G14540 219 / 2e-73 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Lus10016616 [exp] 127 / 7e-38 AT4G14540 215 / 5e-72 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [poplar] [flax] Histone PF00808 [poplar] [flax] CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Representative CDS sequence Show only first row Show all	>Potri.013G019500.1 pacid=42811668 polypeptide=Potri.013G019500.1.p locus=Potri.013G019500 ID=Potri.013G019500.1.v4.1 annot-version=v4.1 ATGGATGATGATAAGCAAGATCAGTTGTTGCCTATTGCCAATGTGGGTCGGGTAATGAAGCAGCACCTGCCACCAACAGCAAGGGTTTCGAAAGAAGCTA AGCAAAGAATGCAAGAATGTGCAACAGAGTTTATAAGCTTTGTCACTAGCGAGGCTTCTAACAAGTGTCGAAAGGAGAATCGCAAGGCTTTGAACGGAGA TGATGTCTGTTGGGCTCTCAGTTCTTTAGGGTTTGATGACTATGCTGACACTACAGTAAGGTATTTGCACAAATACAGGGAGGCTGAAAGGGAAAAGGCT GACCAAAAGAAAGCTACTGACACTGAAAAGGTCAACAAAGATGAAGAATCCAACCATACAAGTTGCCAAGCAGTACAGCAGCAAACTGACCAGATTCCTG AACCAACAATATTAGAGTTTAGGTTTCTTTAA
AA sequence Show only first row Show all	>Potri.013G019500.1 pacid=42811668 polypeptide=Potri.013G019500.1.p locus=Potri.013G019500 ID=Potri.013G019500.1.v4.1 annot-version=v4.1 MDDDKQDQLLPIANVGRVMKQHLPPTARVSKEAKQRMQECATEFISFVTSEASNKCRKENRKALNGDDVCWALSSLGFDDYADTTVRYLHKYREAEREKA DQKKATDTEKVNKDEESNHTSCQAVQQQTDQIPEPTILEFRFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09030	CCAAT	NF-YB4	"nuclear factor Y, subunit B4"...		Potri.013G019500 [exp]	0	1
AT4G13510		ATAMT1;1, AMT1;...	ARABIDOPSIS THALIANA AMMONIUM ...		Potri.013G049925 [exp]	1.41	0.9928
AT1G80830		ATNRAMP1, PMIT1...	natural resistance-associated ...		Potri.005G181100 [exp]	7.93	0.9840	Pt-NRAMP1.4
AT4G19690		ATIRT1, IRT1	ARABIDOPSIS IRON-REGULATED TRA...		Potri.015G117900 [exp]	8.94	0.9835	Pt-ZIP6.4
AT1G80830		ATNRAMP1, PMIT1...	natural resistance-associated ...		Potri.005G181000 [exp]	10.24	0.9834
AT3G12900			2-oxoglutarate (2OG) and Fe(II...		Potri.005G097900 [exp]	11.22	0.9834
AT1G12100			Bifunctional inhibitor/lipid-t...		Potri.001G121800 [exp]	12.36	0.9796
AT3G13610			2-oxoglutarate (2OG) and Fe(II...		Potri.001G006800 [exp]	14.83	0.9795
AT1G65570			Pectin lyase-like superfamily ...		Potri.010G177601 [exp]	15.19	0.9791
AT2G21610		PE11, ATPE11	A. THALIANA PECTINESTERASE 11,...		Potri.004G156300 [exp]	16.61	0.9789
AT3G13610			2-oxoglutarate (2OG) and Fe(II...		Potri.001G006901 [exp]	17.54	0.9763

Compare expression of checked genes

Potri.013G019500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.