Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64740 1512 / 0 PRC1, IXR2, E112, CESA6 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) AT2G21770 1490 / 0 CESA09, CESA9 cellulose synthase A9 (.1) AT5G09870 1488 / 0 CESA5 cellulose synthase 5 (.1) AT4G39350 1480 / 0 ATH-A, CESA2, ATCESA2 cellulose synthase A2 (.1) AT4G32410 1410 / 0 AtCESA1, RSW1, CESA1 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) AT5G05170 1403 / 0 IXR1, CEV1, ATH-B, ATCESA3, CESA3 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) AT5G17420 1401 / 0 ATCESA7, MUR10, IRX3 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) AT2G25540 1355 / 0 CESA10 cellulose synthase 10 (.1) AT5G44030 1328 / 0 IRX5, NWS2, CESA4 IRREGULAR XYLEM 5, cellulose synthase A4 (.1) AT4G18780 1205 / 0 LEW2, IRX1, ATCESA8, CESA8 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G027600 [exp] 1977 / 0 AT5G64740 1506 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Potri.007G076500 [exp] 1535 / 0 AT5G64740 1790 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Potri.005G087500 [exp] 1531 / 0 AT5G64740 1785 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Potri.002G066600 [exp] 1515 / 0 AT4G39350 1655 / 0.0 cellulose synthase A2 (.1) Potri.005G194200 [exp] 1510 / 0 AT5G64740 1665 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Potri.018G029400 [exp] 1455 / 0 AT4G32410 1898 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Potri.006G251900 [exp] 1455 / 0 AT4G32410 1899 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Potri.006G181900 [exp] 1439 / 0 AT5G17420 1730 / 0.0 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) Potri.018G103900 [exp] 1436 / 0 AT5G17420 1730 / 0.0 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003526 [exp] 1523 / 0 AT5G64740 1863 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10002939 [exp] 1520 / 0 AT5G64740 1870 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10041063 [exp] 1519 / 0 AT5G64740 1868 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10006161 [exp] 1431 / 0 AT5G64740 1734 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10028597 [exp] 1428 / 0 AT4G32410 1922 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Lus10018902 [exp] 1420 / 0 AT4G32410 1915 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Lus10039607 [exp] 1394 / 0 AT5G05170 1820 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10012198 [exp] 1392 / 0 AT5G05170 1774 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10007538 [exp] 1390 / 0 AT5G05170 1772 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10022449 [exp] 1292 / 0 AT4G18780 1286 / 0.0 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF00535 [poplar] [flax] Glycos_transf_2 Glycosyl transferase family 2 CL0110 [poplar] [flax] GT-A PF13632 [poplar] [flax] Glyco_trans_2_3 Glycosyl transferase family group 2
Representative CDS sequence Show only first row Show all	>Potri.013G019800.6 pacid=42812268 polypeptide=Potri.013G019800.6.p locus=Potri.013G019800 ID=Potri.013G019800.6.v4.1 annot-version=v4.1 ATGGAAGTGAGTGCAGGTTTGGTGGCCGGCTCTCACAATAGAAATGAGCTTGTTGTTATCCGTCGAGATGGAGAATCTGCTCCGAGATCGCTAGAGAGAG TGAGCAGGCAAATATGCCAGATATGTGGAGATGATGTGGGGCTTACGGTGGACGGGGAGCTTTTTGTGGCCTGCAACGAGTGTGCCTTCCCCATTTGTAG AACTTGTTACGAGTATGAGCGTAGAGAAGGAAATCAAGTCTGCCCTCAATGCAAGACTAGATTCAAGCGTCTCAAAGGATGTGCGAGAGTCCATGGGGAT GAAGAAGAAGATGGCATTGATGATTTGGAAAACGAGTTCAATTTCGATGGAAGGAATAGCAACAGACACGATATGCAGCACCATGGTGGTCTTGGAGGAC CTGAATCTATGCGTCACTATGATCCCGATCTGCCCCAAGTCCCTCTCCTTACTAATGGTCAAATGGTTGATGACATTCCTCCTGAACAACATGCTTTGGT CCCTTCATACATGGCTCCTATTGGTGGCAGTGGAAAAAGGATCCACCCCCTCCCCTTTTCAGATTCTGCCGTTCCTGTGCAACCAAGATCCATGGATCCT TCCAAGGACTTGGCTGCTTATGGATATGGAAGTATTGCATGGAAGGAGAGGATGGAGAGCTGGAAGCAAAAACAGGACAATCTGCAGATGATGAAGAGTG AAAACGGGGACTATGATGGTGATGATCCCGATCTCCCATTAATGGATGAGGCAAGGCAACCACTATCACGAAAAACACCTCTTCCGTCCAGCCAAATCAA TCCTTACCGAATGATCATCATTGTTCGACTTGTTGTTGTTGGGTTCTTCTTCCACTATCGAGTCACACATCCTGTGAATGATGCATTTGCTTTATGGCTT ATATCTGTGATCTGTGAGATTTGGTTCGCTGTTTCATGGATTCTTGATCAATTCCCAAAGTGGCTCCCTATTGACAGGGAAACTTATCTCGATAGATTGT CTCTGAGGTATGAAAAGGAAGGCCAGGCTTCTCAGCTTTGTCCAGTTGACATATATGTTAGTACCGTTGATCCATTGAAAGAGCCCCCTCTGGTGACCGC AAACACGGTTCTGTCCATTCTTGCAGTGGATTACCCTGTTGACAAGGTTTCGTGTTACGTTTCTGATGATGGTGCTGCTATGCTGACATTTGAGGCATTG TCAGAAACATCTGAATTTGCAAAGAAATGGGTCCCTTTCTGTAAGAAATTTAGCATTGAACCTCGGGCACCGGAGTTTTATTTTGCTCAAAAGATAGATT ATCTGAAAGATAAGGTGCAGGCTTCATTTGTCAAGGAACGAAGAGCAATGAAGAGAGAGTATGAAGAGTTTAAAGTTCGGATCAATGCTTTGGTTTCCAA GGCTCATAAGGTCCCAGAAGATGGATGGACAATGCAGGATGGTACTCCATGGCCTGGGAATAATGTTCGTGATCACCCTGGAATGATTCAGGTTTTCCTT GGCCAAAGTGGAGGGCATGACACTGATGGAAATGAATTACCACGTCTGGTATACGTTTCCAGAGAAAAGAGACCTGGATTTAATCACCACAAAAAGGCTG GAGCTATGAATGCTTTGGTCAGAGTCTCTGCCGTGCTAACAAATGCTCCTTATCTTTTGAATTTGGATTGTGATCACTACATCAATAACAGTAAGGCTCT TAGAGAAGCAATGTGTTTCATGGTGGATCCATTACTTGGAAAGAGAGTGTGCTATGTCCAGTTCCCACAGAGGTTTGATGGCATTGACAGGAGTGATCGA TATGCCAACCGGAACACTGTATTCTTTGATATCAATATGAGAGGTTTGGATGGCATTCAAGGACCTATATATGTCGGGACTGGATGTGTTTTCAGAAGGC ACGCGCTTTATGGTTATGATGCTCCTAAAACAAAGAAACCACCAACGAGGACATGCAACTGCTTGCCTAAGTGGTGCTGTGGATGCTTCTGTTCGGGAAG GAAAAAGAAGAAGAAGACAAACAAACCTAAGTCCGAGTTAAAGAAGAGGAACTCTAAGACATTTGAACCTGTGGGTGCTTTGGAGGGTATTGAAGAGGGA ATTGAAGGAATTGAAAGTGAAAGTGTTGATGTAACATCTGAGCAGAAATTGGAAAAGAAGTTTGGACAATCTTCTGTGTTTGTAGCGTCTACCCTGCTAG AGGATGGTGGCACGCTGAAAAGTGCCAGCCCTGCATCTCTGCTTAAAGAAGCCATCCATGTCATTAGCTGTGGCTATGAAGATAAAACAGAATGGGGCAA AGAGGTAGGGTGGATTTATGGTTCTGTTACAGAGGATATATTGACAGGCTTTAAAATGCACTGTCATGGATGGAGATCAATATACTGTATTCCTTCTAGG CCAGCATTTAAAGGTTCGGCACCCATTAATCTTTCTGATCGTCTACACCAGGTCCTTAGATGGGCTCTTGGATCAGTTGAGATATTTTTGAGCCGGCACT GTCCTCTTTGGTACGGATATGGAGGGGGTTTGAAGTGGTTGGAGCGTCTGTCTTACATAAATGCTACTGTTTATCCTTTGACATCCATTCCTCTACTGGC GTACTGTACTCTTCCTGCAGTGTGCTTGCTTACTGGGAAATTTATCACTCCGGAGCTCAGCAATGCTGCCAGCCTGTGGTTTTTGTCTCTTTTCATTTGT ATTTTCGCAACAAGTATACTGGAAATGAGATGGAGTGGGGTTGGTATTGATGAATGGTGGAGAAACGAACAATTTTGGGTGATTGGAGGGGTATCAGCAC ATCTATTTGCAGTGTTCCAGGGGCTTTTAAAGGTTCTAGCTGGTGTTGATACGAACTTCACTGTTACGTCTAAAGGAGGAGACGACGATGAGTTCTCAGA GCTGTATGCATTTAAGTGGACCACGTTGCTCATCCCACCAACAACATTGCTGATAATAAACCTGGTTGGAGTCGTGGCTGGTGTCTCGAATGCTATAAAT AATGGGTATGAGTCATGGGGGCCTCTGTTTGGTAAGCTTTTCTTTGCATTCTGGGTGATAGTTCACCTTTATCCTTTCCTGAAAGGTTTACTCGGCCGAC AGAACAGAACTCCCACAATCATCATTGTGTGGTCAATTTTGCTTGCTTCCATCTTTTCGCTTCTGTGGGTTCGAATCGATCCGTTCTTGGCCAAGTCCAA CGGTCCACTTCTGGAGGAATGTGGACTGGACTGTAATTAA
AA sequence Show only first row Show all	>Potri.013G019800.6 pacid=42812268 polypeptide=Potri.013G019800.6.p locus=Potri.013G019800 ID=Potri.013G019800.6.v4.1 annot-version=v4.1 MEVSAGLVAGSHNRNELVVIRRDGESAPRSLERVSRQICQICGDDVGLTVDGELFVACNECAFPICRTCYEYERREGNQVCPQCKTRFKRLKGCARVHGD EEEDGIDDLENEFNFDGRNSNRHDMQHHGGLGGPESMRHYDPDLPQVPLLTNGQMVDDIPPEQHALVPSYMAPIGGSGKRIHPLPFSDSAVPVQPRSMDP SKDLAAYGYGSIAWKERMESWKQKQDNLQMMKSENGDYDGDDPDLPLMDEARQPLSRKTPLPSSQINPYRMIIIVRLVVVGFFFHYRVTHPVNDAFALWL ISVICEIWFAVSWILDQFPKWLPIDRETYLDRLSLRYEKEGQASQLCPVDIYVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEAL SETSEFAKKWVPFCKKFSIEPRAPEFYFAQKIDYLKDKVQASFVKERRAMKREYEEFKVRINALVSKAHKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFL GQSGGHDTDGNELPRLVYVSREKRPGFNHHKKAGAMNALVRVSAVLTNAPYLLNLDCDHYINNSKALREAMCFMVDPLLGKRVCYVQFPQRFDGIDRSDR YANRNTVFFDINMRGLDGIQGPIYVGTGCVFRRHALYGYDAPKTKKPPTRTCNCLPKWCCGCFCSGRKKKKKTNKPKSELKKRNSKTFEPVGALEGIEEG IEGIESESVDVTSEQKLEKKFGQSSVFVASTLLEDGGTLKSASPASLLKEAIHVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSIYCIPSR PAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGYGGGLKWLERLSYINATVYPLTSIPLLAYCTLPAVCLLTGKFITPELSNAASLWFLSLFIC IFATSILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGVDTNFTVTSKGGDDDEFSELYAFKWTTLLIPPTTLLIINLVGVVAGVSNAIN NGYESWGPLFGKLFFAFWVIVHLYPFLKGLLGRQNRTPTIIIVWSILLASIFSLLWVRIDPFLAKSNGPLLEECGLDCN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Potri.013G019800 [exp]	0	1
AT4G01210			glycosyl transferase family 1 ...		Potri.002G166100 [exp]	2.82	0.7859
AT1G10120	bHLH	bHLH074, CIB4	basic helix-loop-helix (bHLH) ...		Potri.005G146500 [exp]	5.19	0.7894
AT5G13140			Pollen Ole e 1 allergen and ex...		Potri.001G060500 [exp]	5.91	0.7282
AT4G39350		ATH-A, CESA2, A...	cellulose synthase A2 (.1)		Potri.002G066600 [exp]	8.83	0.7121
AT4G32410		AtCESA1, RSW1, ...	RADIALLY SWOLLEN 1, cellulose ...		Potri.018G029400 [exp]	9.89	0.7071	Pt-CESA1.2
AT3G22960		PKP-ALPHA, PKP1	PLASTIDIAL PYRUVATE KINASE 1, ...		Potri.001G289300 [exp]	11.74	0.7302
AT4G38430		ATROPGEF1, ROPG...	rho guanyl-nucleotide exchange...		Potri.004G179742 [exp]	15.00	0.7261
AT2G38040		CAC3	acetyl Co-enzyme a carboxylase...		Potri.006G095800 [exp]	22.20	0.6903	CAC3.1
AT5G05170		IXR1, CEV1, ATH...	ISOXABEN RESISTANT 1, CONSTIT...		Potri.016G054900 [exp]	25.27	0.7458	Pt-CESA4.2
AT3G55020			Ypt/Rab-GAP domain of gyp1p su...		Potri.008G046600 [exp]	26.92	0.6947

Compare expression of checked genes

Potri.013G019800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.