Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62600 513 / 0 Flavin-binding monooxygenase family protein (.1) AT1G62620 503 / 9e-177 Flavin-binding monooxygenase family protein (.1) AT1G12200 502 / 2e-176 FMO flavin monooxygenase, Flavin-binding monooxygenase family protein (.1) AT1G63370 501 / 5e-176 Flavin-binding monooxygenase family protein (.1) AT1G65860 482 / 2e-168 FMOGS-OX1 ,FMO GS-OX1 flavin-monooxygenase glucosinolate S-oxygenase 1 (.1) AT1G12140 477 / 1e-166 FMOGS-OX5 ,FMO GS-OX5 flavin-monooxygenase glucosinolate S-oxygenase 5 (.1.2) AT1G62580 474 / 5e-165 NOGC1 nitric oxide-dependent guanylate cyclase 1, Flavin-binding monooxygenase family protein (.1) AT1G62560 472 / 2e-164 FMOGS-OX3 ,FMO GS-OX3 flavin-monooxygenase glucosinolate S-oxygenase 3 (.1) AT1G62540 464 / 3e-161 FMOGS-OX2 ,FMO GS-OX2 flavin-monooxygenase glucosinolate S-oxygenase 2 (.1) AT1G62570 462 / 1e-160 FMOGS-OX4 ,FMO GS-OX4 flavin-monooxygenase glucosinolate S-oxygenase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G121000 [exp] 614 / 0 AT1G12200 557 / 0.0 flavin monooxygenase, Flavin-binding monooxygenase family protein (.1) Potri.001G121100 [exp] 561 / 0 AT1G62600 607 / 0.0 Flavin-binding monooxygenase family protein (.1) Potri.012G067500 [exp] 365 / 2e-122 AT5G07800 696 / 0.0 Flavin-binding monooxygenase family protein (.1) Potri.006G137600 [exp] 64 / 1e-10 AT1G19250 699 / 0.0 flavin-dependent monooxygenase 1 (.1) Potri.001G335900 [exp] 57 / 2e-08 AT1G19250 630 / 0.0 flavin-dependent monooxygenase 1 (.1) Potri.005G250600 [exp] 56 / 5e-08 AT1G19250 330 / 4e-107 flavin-dependent monooxygenase 1 (.1) Potri.018G115800 [exp] 54 / 1e-07 AT1G19250 374 / 4e-124 flavin-dependent monooxygenase 1 (.1) Potri.006G060200 [exp] 51 / 1e-06 AT1G19250 378 / 5e-126 flavin-dependent monooxygenase 1 (.1) Potri.009G143500 [exp] 49 / 5e-06 AT1G19250 400 / 2e-134 flavin-dependent monooxygenase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024598 [exp] 526 / 0 AT1G62620 587 / 0.0 Flavin-binding monooxygenase family protein (.1) Lus10024609 [exp] 405 / 3e-139 AT1G62560 444 / 1e-154 flavin-monooxygenase glucosinolate S-oxygenase 3 (.1) Lus10015731 [exp] 362 / 5e-121 AT5G07800 621 / 0.0 Flavin-binding monooxygenase family protein (.1) Lus10003474 [exp] 343 / 1e-113 AT5G07800 623 / 0.0 Flavin-binding monooxygenase family protein (.1) Lus10032247 [exp] 304 / 7e-101 AT1G12140 315 / 1e-105 flavin-monooxygenase glucosinolate S-oxygenase 5 (.1.2) Lus10032235 [exp] 94 / 5e-23 AT1G62600 117 / 2e-32 Flavin-binding monooxygenase family protein (.1) Lus10005178 [exp] 63 / 2e-10 AT1G19250 744 / 0.0 flavin-dependent monooxygenase 1 (.1) Lus10038126 [exp] 60 / 3e-09 AT1G19250 735 / 0.0 flavin-dependent monooxygenase 1 (.1) Lus10020001 [exp] 56 / 3e-08 AT1G19250 709 / 0.0 flavin-dependent monooxygenase 1 (.1) Lus10023940 [exp] 54 / 2e-07 AT1G19250 399 / 3e-134 flavin-dependent monooxygenase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF07992 [poplar] [flax] Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase
Representative CDS sequence Show only first row Show all	>Potri.013G019900.1 pacid=42811846 polypeptide=Potri.013G019900.1.p locus=Potri.013G019900 ID=Potri.013G019900.1.v4.1 annot-version=v4.1 ATGCAAGCATCACCGAATTCGCTCTCCTCCCACCACGTCGCCGTGATCGGGGCAGGAGCCGCCGGTCTGGTGGCTGCACGTGAGCTCCACCGAGAGGGTC ACAAAGTGGTGGTCTTTGAGAAAGATGACCAAGTTGGTGGTCTCTGGATGTACGATCCCCGTGTAGAACCCGACCCTCTCGGGCTTGACCTAACCCGACC TGTTGTTCACTCAAGTCTCTACGAGTCTCTCAGGACCAACTTGCCAAGGGAGACGATGGGTTTTATGGACTACCCGTTTGTGACCCGAGAGGGTGAGGGA AGAGACCCGAGAAGGTTTCCGGGTCATAGAGAAGTGTTGATGTATTTGCAGGATTATGCCAGGGAATTTGGGATTGAAGAGATGGTGAGGTTTGGGTGTG AGGTGGTGAATGTAGAGATGATTGATAGTGGGAAATGGAAAGTGAAGTCAAAAAGGAAGAGACTTGATGATAATGATAGAGGTGATGATTTTGCTGATCA TGAGGATTTTGATGCTGTTGTTGTTTGCGTTGGACATTACACCCAACCTCGTATCGCTGAAATTCCTGGCATCAATTTGTGGCCGGGGAAGCAGATACAC AGCCACAACTATCGTATTCCTGAGCCTTTCAGGGATCAAATCATAATTTTGATAGGAGCTTCTGCGAGCGCTGCTGATATATCCGTGGAAATTGCTGGAC TTGCCAAAGAGGTTCACATTGCTCGTAGATCGGCTGTAGATGATGATACATACGAAAAAAAGCCTGGATATGATAACATATGGCTTCATTCCACGATAGA AAGAGCATGTGAAGATGGTACTGTCATTTTCCGAGATGGCAGTGTTATCCTAGCTGACGTTATTCTGCACTGCACCGGGTACAAATATGGCTTCCCTTTT CTGAAAACTGATGGCATCGTGACTGTGGATGACAATCGTGTGGGGCCATTGTACAAGCATGTTTTCCCTCCAATCTTGGCCCCGTGGCTTTCCTTTGTCG GGATACCCTATTGGACTTTCCCTTTCCCAACGTTCGAAGTTCAAAGCAAGTGGATTGCTGGTGTTTTATCAGGTCGAATTGCTCTTCCTTCACAAGAGGA CATGGTGGAAGATGTTAAGATCTACTACTCTGAACTTGAAGCTTCTGGTGTACCTAAGCATCACACTCATAACTTAGCTCATTCTACAAATGACTACAAC ATGTGGCTTGCCTCCCAGTGTCAGTGTTCATGCTTTGAAGAATGGAGAATTGAAATGTCCCATGAAATTCTTAAGAACTGGCGTGCCAGGCCAAATATGT ATCGTGACGAATGGGACGACGACCACCTGATCTTGCAAGCCCAAGAAGACTTCAACAGACGCATCTCAAACAAAGCCAGTAATGGTCATATCTGA
AA sequence Show only first row Show all	>Potri.013G019900.1 pacid=42811846 polypeptide=Potri.013G019900.1.p locus=Potri.013G019900 ID=Potri.013G019900.1.v4.1 annot-version=v4.1 MQASPNSLSSHHVAVIGAGAAGLVAARELHREGHKVVVFEKDDQVGGLWMYDPRVEPDPLGLDLTRPVVHSSLYESLRTNLPRETMGFMDYPFVTREGEG RDPRRFPGHREVLMYLQDYAREFGIEEMVRFGCEVVNVEMIDSGKWKVKSKRKRLDDNDRGDDFADHEDFDAVVVCVGHYTQPRIAEIPGINLWPGKQIH SHNYRIPEPFRDQIIILIGASASAADISVEIAGLAKEVHIARRSAVDDDTYEKKPGYDNIWLHSTIERACEDGTVIFRDGSVILADVILHCTGYKYGFPF LKTDGIVTVDDNRVGPLYKHVFPPILAPWLSFVGIPYWTFPFPTFEVQSKWIAGVLSGRIALPSQEDMVEDVKIYYSELEASGVPKHHTHNLAHSTNDYN MWLASQCQCSCFEEWRIEMSHEILKNWRARPNMYRDEWDDDHLILQAQEDFNRRISNKASNGHI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G62600			Flavin-binding monooxygenase f...		Potri.013G019900 [exp]	0	1
AT4G30190		PMA2, AHA2	PLASMA MEMBRANE PROTON ATPASE ...		Potri.006G165900 [exp]	2.44	0.9322
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Potri.010G202300 [exp]	6.85	0.9355
					Potri.005G038350 [exp]	12.56	0.8714
AT5G36930			Disease resistance protein (TI...		Potri.011G008164 [exp]	18.65	0.9218
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Potri.004G230100 [exp]	21.35	0.9063
AT4G31980			unknown protein		Potri.003G206101 [exp]	23.23	0.9129
AT1G57790			F-box family protein (.1)		Potri.012G106750 [exp]	24.18	0.9227
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.007G140800 [exp]	42.42	0.9205
AT1G24030			Protein kinase superfamily pro...		Potri.019G030600 [exp]	45.35	0.9141
AT4G27220			NB-ARC domain-containing disea...		Potri.019G020102 [exp]	45.50	0.9125

Compare expression of checked genes

Potri.013G019900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.