Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57710 203 / 2e-62 Protein kinase superfamily protein (.1) AT3G57730 198 / 1e-60 Protein kinase superfamily protein (.1) AT3G57750 195 / 1e-59 Protein kinase superfamily protein (.1.2) AT3G57700 192 / 2e-58 Protein kinase superfamily protein (.1) AT3G57720 190 / 2e-57 Protein kinase superfamily protein (.1) AT3G25490 183 / 4e-54 Protein kinase family protein (.1) AT3G57760 180 / 2e-53 Protein kinase superfamily protein (.1.2.3) AT1G16260 186 / 3e-53 Wall-associated kinase family protein (.1.2) AT3G52530 177 / 1e-52 Protein kinase superfamily protein (.1) AT1G17910 181 / 3e-51 Wall-associated kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G004900 [exp] 225 / 3e-71 AT3G57710 270 / 8e-89 Protein kinase superfamily protein (.1) Potri.002G003300 [exp] 214 / 4e-67 AT3G57710 263 / 2e-86 Protein kinase superfamily protein (.1) Potri.005G068000 [exp] 187 / 6e-54 AT3G57710 214 / 3e-63 Protein kinase superfamily protein (.1) Potri.002G075901 [exp] 181 / 1e-52 AT1G21270 507 / 5e-174 wall-associated kinase 2 (.1) Potri.002G076000 [exp] 181 / 3e-51 AT1G21270 631 / 0.0 wall-associated kinase 2 (.1) Potri.001G040756 [exp] 172 / 1e-50 AT1G69730 448 / 3e-152 Wall-associated kinase family protein (.1) Potri.001G039450 [exp] 178 / 3e-50 AT1G79670 613 / 0.0 RESISTANCE TO FUSARIUM OXYSPORUM 1, Wall-associated kinase family protein (.1.2) Potri.003G185732 [exp] 174 / 4e-50 AT1G17910 446 / 8e-150 Wall-associated kinase family protein (.1) Potri.003G185700 [exp] 177 / 5e-50 AT1G16260 622 / 0.0 Wall-associated kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008105 [exp] 196 / 8e-57 AT1G16120 419 / 3e-137 wall associated kinase-like 1 (.1) Lus10004504 [exp] 183 / 3e-52 AT1G16130 411 / 5e-134 wall associated kinase-like 2 (.1) Lus10034085 [exp] 164 / 2e-45 AT1G16130 526 / 5e-179 wall associated kinase-like 2 (.1) Lus10006215 [exp] 157 / 4e-44 AT1G56720 599 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10001423 [exp] 154 / 2e-42 AT3G59110 763 / 0.0 Protein kinase superfamily protein (.1) Lus10001055 [exp] 155 / 5e-42 AT3G59110 766 / 0.0 Protein kinase superfamily protein (.1) Lus10003063 [exp] 154 / 2e-41 AT1G16130 514 / 2e-173 wall associated kinase-like 2 (.1) Lus10008015 [exp] 149 / 4e-41 AT4G35600 464 / 2e-162 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2) Lus10002697 [exp] 147 / 1e-40 AT1G07570 543 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10000954 [exp] 147 / 1e-40 AT1G07570 535 / 0.0 Protein kinase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.013G020100.1 pacid=42812178 polypeptide=Potri.013G020100.1.p locus=Potri.013G020100 ID=Potri.013G020100.1.v4.1 annot-version=v4.1 ATGCACAGAATTGGTGGCATGAGTACTTGCTGGGAGACCAAGAAGGATAAGAAAGTAAACAAGGAAACTGCATTCATAAAGAATGGAAGCAAATTACTGG AGAAGCTTGTTGACATTTGTGATGGAAAATGCAATTCTATTCGTAGTTTCTCTGCCACAGAGCTCAAGAAAGCAACAAACAACTATGATCCGCAGAAAAT ATTGACCGGCGATTCAGGCTATAAATTGTACAAGGGTTTTTTGCAAGGCAGACCTGTTTCTGTTAAGAAATTTAAGGATGACGATGAACAGTATGAATAT TGTTTCAATGACATTGTTTATGCATCAAAAATGAGTGTACATAAAAGTTTTATGAAGTTGTTAGGCTGCTGCTTGGAGGCTCGGATTCCTATTCTAGTTT TCGAATATGTTGGAGATTGGACACTTTCTGATTTTCTATGGGGCTCTGAGGAAGCCCGTTGTCAGCCTTTGCTATGGATTCCAAGGTCAAAAATTGCAAT GGATATGGCTAATGCAGTTGCTTTTCTTCATGCTGCTTTTTCCAAACCCATTGTTTTTAGAAATATCAAACCCTTGAACATCTTACTGGATGACAACCAT GAGGCCAAATTGTCAGATTTCTCGATCTCCATATCGATTCCTAAAGGTGAATCTCATGTACGGGATTCAGTTGCAGGGGCAACAGGACTCATCGCGCCCG AGTACCTGACCACTGGTAATTTCAATGAGAAGCAAGATGTTTTCAACTTTGGTGTATTCCTACTTGTGCTTTTGTCTGGACAGATGGTGGTTGATTTTTC TCGTCCTGAAAAGGAAATTCTCTTACAAGATCATGTGAAAAAATGCATTGAAGATGATAGGTTTAACAAAGTCATAGATTCCACTATCATTGCCGAGGGG ACTTGGCCAGGAAAAGAGCAGCAATTGCAGGCTTATACAGCACTTTCCCTGAGATGCATCTCTGAATTAGCAGAAGATAGACCAACAATGATTGATGTTT CAAAGGAACTCAGGAAAATATATTGGTCTGCAATTTCTTGCCGTCAGCAATAA
AA sequence Show only first row Show all	>Potri.013G020100.1 pacid=42812178 polypeptide=Potri.013G020100.1.p locus=Potri.013G020100 ID=Potri.013G020100.1.v4.1 annot-version=v4.1 MHRIGGMSTCWETKKDKKVNKETAFIKNGSKLLEKLVDICDGKCNSIRSFSATELKKATNNYDPQKILTGDSGYKLYKGFLQGRPVSVKKFKDDDEQYEY CFNDIVYASKMSVHKSFMKLLGCCLEARIPILVFEYVGDWTLSDFLWGSEEARCQPLLWIPRSKIAMDMANAVAFLHAAFSKPIVFRNIKPLNILLDDNH EAKLSDFSISISIPKGESHVRDSVAGATGLIAPEYLTTGNFNEKQDVFNFGVFLLVLLSGQMVVDFSRPEKEILLQDHVKKCIEDDRFNKVIDSTIIAEG TWPGKEQQLQAYTALSLRCISELAEDRPTMIDVSKELRKIYWSAISCRQQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G57710			Protein kinase superfamily pro...		Potri.013G020100 [exp]	0	1
AT2G38130		ATMAK3	Acyl-CoA N-acyltransferases (N...		Potri.001G435300 [exp]	1.41	0.8427
AT3G16890		PPR40	pentatricopeptide (PPR) domain...		Potri.010G141201 [exp]	8.06	0.7905
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Potri.017G018801 [exp]	16.00	0.8361
AT1G01490			Heavy metal transport/detoxifi...		Potri.017G145516 [exp]	22.64	0.7702
AT4G25140		OLE1, OLEO1	oleosin 1 (.1)		Potri.001G080000 [exp]	24.00	0.8179
AT5G46940			Plant invertase/pectin methyle...		Potri.005G023050 [exp]	27.16	0.7954
					Potri.001G422750 [exp]	29.93	0.7804
AT4G37940	MADS	AGL21	AGAMOUS-like 21 (.1)		Potri.009G079000 [exp]	30.78	0.7921
AT2G42160		BRIZ1	BRAP2 RING ZnF UBP domain-cont...		Potri.018G128100 [exp]	37.30	0.6758
AT1G60680		AGD2	NAD(P)-linked oxidoreductase s...		Potri.008G158300 [exp]	37.94	0.6734

Compare expression of checked genes

Potri.013G020100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.