Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62900 174 / 1e-43 CW-type Zinc Finger (.1) AT1G02990 163 / 2e-40 unknown protein AT4G15730 138 / 1e-32 CW-type Zinc Finger (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G028700 [exp] 1875 / 0 AT3G62900 176 / 5e-44 CW-type Zinc Finger (.1) Potri.014G132900 [exp] 278 / 1e-75 AT3G62900 322 / 2e-89 CW-type Zinc Finger (.1) Potri.002G209409 [exp] 277 / 2e-75 AT3G62900 285 / 7e-78 CW-type Zinc Finger (.1) Potri.004G035300 [exp] 49 / 3e-05 AT4G32010 483 / 3e-158 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Potri.011G144500 [exp] 46 / 0.0002 AT1G19100 114 / 5e-26 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Potri.019G130300 [exp] 45 / 0.0004 AT2G30470 757 / 0.0 VP1/ABI3-LIKE 1, high-level expression of sugar-inducible gene 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040919 [exp] 224 / 9e-59 AT3G62900 307 / 6e-85 CW-type Zinc Finger (.1) Lus10009815 [exp] 200 / 2e-51 AT3G62900 301 / 4e-83 CW-type Zinc Finger (.1) Lus10022741 [exp] 45 / 0.0005 AT4G32010 748 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07496 [poplar] [flax] zf-CW CW-type Zinc Finger
Representative CDS sequence Show only first row Show all	>Potri.013G020200.2 pacid=42811494 polypeptide=Potri.013G020200.2.p locus=Potri.013G020200 ID=Potri.013G020200.2.v4.1 annot-version=v4.1 ATGGGAGAGGGTGAGATTGAAGAGGGAGAGGCATGTGATTACACGAACAATGATGATCGGAACATTGATATTGATGTGGCTCTCTCCTACATTGATGATA AGATTCAGGACATCTTGGGGCAGTACCAAAAAGATTTTGAAGGTGGAGTTTCTGCTGATACTTTGGGGGCAAGATTTGGTGGTTATGGTACATTTTTACC TACTTATCAGCGCTCTCCTTCTATATGGTCAAATCCAGTAGCCCAGCAGAAAGTACAAAGTCAAGGCATTCAAGCATCTTCTCATGATGATCAGCTGGCG GAGGGTGCCATGCAGAACTCCACGGTTTCAATACGTGAGACCGTTTCTGCGAGACCTGAAGCTGCTTCGAGAAGTGCCTTTCCACTGCGTGTGGCAAAAC CTTTGCCTGAGGATAGGTTGGTTAAACCTCGAAGGTCAAGAGAGTTCATTTCTGATTTTGAACCACTTAAAGGGCCAGGTAACCCATCGAACCAGAAAGT GCTGAAGGTACGAATCAAAGTGGGGTCAGATAATTGTTTGCCGGAGCTGAAAACTTCAGCAATTTACAGTAATCTTGGCCTAGACATGTCTCCATCTTCA TCATCAGAGGACACTGACAGCCCCTCTGAATGTGAAAGGGATTTTCCAGATTCTCTAGAGGAACACATTTATTCTCCATCCTGCATTGTCAGGATCATGA CCTCTTCTCCCATACCCAGTGGTGCAATGTTGTCACCTCTTCGTGATTGTTTTCTTAATTTATCAGAACAGGGATTTTGGGACCGCAAAAGAACCGTACC TGTGCAAGAGTGCTCTGCCATGCAGGCTGATGAGAAAGTTCTTGTTGACAAACAAAAGAAGCCAGGTGATAGAAGTGATAGGTTGGAGTTGAAAAATGAA CACTGTAATGATCCAACCAATTCGTTCAGTGCCTGTTCGAAGAATGAATCAAGGATGGAGACCTCAAAGGGCAACCATATGTTATCTGATGCTGGGAATC ACCCACCTGAATCTAAAACAACTAAAGTGGGCAAAGTAGCTGTTGGAACAGGTATAATATTCAGAGCCAATTTGAGTGAGGCAAAGAAGGAATTATTTAG CCAAAAAGCTTGCAAGATTCATGAAGTGAGTGCAAAAGCTACTTTGACTGGAAAAGTTCAGAAAGATAAAAAATTAGGCTGTGAACCAAGAGACAATGGG AGCAAAGGTGATAAAAGTCTTGCTTTGTTTAAAGACAATTATATGCCTGAGGAGATGAGAAAATGTGGAGATAGAACATTGGATCTTACAAAACAGGAGT TTGAAAAGAAAAAAGCAACCCACTTACAGGATGATATGAAGGTATCTCATGGGGGAAAACAACTATCTACTGGCAAAAAGAAATCAAAGGAAAGCAAAAA TGATTATAGCTCAACTGCTGGGACATCAAAAAATAGTATGAGGATCCGTTTGTCTGCTGCACCAAAAGAAAAGATCTTTCAGAAAAGCTGTAAAGGGGAC AATGCATTGCTTGAAGATTTGAGAAAGGTAAAAGTTAAACATACTGTATCAGTCAGTGACAGAAAAGCCAGGGGAAATGATTCTAGAAGCTGTTTGCTGG GAACTTCTGTTGAAGATGAGACGAAGGACAATACGCTTGAGGTGCCTGAGAAAGAACCCCTTGCTTTCAGAAATAAATCAAAAGTGAGTTCAGGTGATAA AAAATCCAGTTTCGTTTCAACTTCTAAAGAAAATTTGAGAGGAGACATCAATGATGTTGCACCATTAGCTGGCCCACTTCCTACAGAGGTGCCAACATTT CTTATAGAGGAAGATTGGGTGTGTTGTGACAAGTGTCACAAGTGGCGGCTTCTACCATATGGTACAAATCCTAACCAACTTCCACAGAAATGGCTGTGCA GCATGCTTGACTGGCTGCCTGGAATGAACCACTGCACTTTTAGTGAGGAGGAAACAACAGATGCTCTGCATGCACTTTATCGATTACCTATTGCAGGGAA TCATGGTGACCAGCTAAGCCATTCTGTCAGCGCTGAATCTTCGATTACCTTGGTTAATACCTTGCATGATCTTGATCAAAATCCACAAGATCCTAGTTTT AGTGGTGGAAAGAAGAAACTTGAAATGAAAGAAGTGTCTCATCCAGCTCAATATAGTGTTAACAAGAAGCGGCTGAACTCTACAATGAAGAATGAACAGG TCTTTATTGAAAGAAGAAGTTTACATAACAGGAGCTTGTCTTCTTTGGAGACCAAGTTGGAGAAAAGATTGGGTGATGTCCAGCCACAGAAATTCAAGAG CATGAGGGAAGCTGATCAAGAAGATTTCAAGCTTTCCAAAAAAGCAAGGATGGAGGGTATGCAATATGCGGTGGAAGATCATAATACTGGTGGAATCTCA AAGAAAGAAATGGGAAGTAATAATAAAAAATATTCATCATACAGAGATGTGAGGTATCTCTCAAAGGATTCCACGATTCTTAATGTTGAAAAACATCAGT TTCAGAAGACAATGGTTACAGAGGATCTAGATCCAATGGGTATTGAGGGGAAGAAAAGAAAGTCAGACTGGATGAACAGTCAGATTTATCCTGGTAACCA TTCTGGTAATGGGCAAGATAACAGTATTTCCGTGGAGGAGACAAGTTGGAGTGAATGCAGGAAAGAAAGGCACTCAAGAAAATGTAAATATGAGGGAAAG GTCTCTAGCGCAAGCAAGGGTGTTTGCAAACTGTTTGGAAAAGAGAAGATTAATTATTTATCCCAGTCAACTGTTGATGCTAAGAATTCAGAGAGAAGGG ATTTGAGAGATGGACTGCAATGCACAGAAGCTACCTCAAGCCCATCCTTGATATCAAGCACATGCAAAGTTAAAATCAACTTCCCGGATGTTAAGGGCTC ACCTGTGGAGTCAGTCTGTTCTTCACCTTTGAAGATTTCTAACCGAGTCAGTCCTAGGAGTTTTTCAGGCAATCATGGTTGCACAGATGTTGGTTTTTGT CACTTCAGTGGCCAAACAAAATGCTTAGAAGGTGAATCTGTTGGTGTGAGCAACTGGTCTGGGACCTTAAGGAAGGAAAATGCCCCTGTTGTTGCACCTA TCAAGGAAAAATCAAGGGATAACTATAGACATAATGACGATAAAGTTGAGAAAAAATTTACTGGTCAGAAGGTTTCTTCCATCAAAAGTCTAAATAATAG TACTAGAGAGGATGACCAATTTGGACGTGAAGGATATGAGGCCATGTTTAGGAAAATGGATGGTGTTTTTCAGAAGGATTGCAAATCAGGTGCGCAGAAC CACAGCAACAGTGAATTTTTGGACTTGCTTCCATCAGACACAATTAATCAATTGGAAAAATCTGCAGGGAGACATAAGTCATTGGATTTCTTATTTTTTG GCAATAAAAAGGAAAATCAGTGTTGGAAAAGTAGAGAATCTGATGCATTGGAAGTTGATGGTTCTAGTTGTGATGGCTTGGGAAGGGCTCCAAGACAACT TGGAAAGGATGATGGTCAGAATGGCATTGACGATGTTATGCGAAGGCATCCTTTGCTTGCTGCCAGCAACATTCTTGCATCGAATCATCTCAGAAATGAT TTCTTTAGTCAGGTAGCAAATGATGCTTTGGAAGGAGCCAAGGATCTTAAGCATTCAGCAGATCCTCTTCAGATTTCTGCATCAGGCCTTCAAATTGCTG AGCTATTCTTTCAAGCAGCTTTGAAATTTCTTCATGGGGCATCACTTTTTAATCCTAATAACAACAACAGTACCAACAATGGGAACATGACATCAGCTGA AATGTATGGTCATGCTGCAAAACTGTGCGAATATTGTGCTTCAGAATTTGAGAGATGCAATGACTTGGCCTCCGCTTTTTTGGCCCGCAAATGCATTGAA GTGGCATATATGCGGGTAGTCTATTCCAATGACCTCACTGCAAGCCGGGACCGGTATGAACTTCAAACGGTATTGCAAAGGGTTTCTGCAGTTGAGTCTC CATCATCTTCCGACTCTGATGTTGAGAACCTAAACAGTGAAGTAAAAGTGGGGAAGAGACAAATAACTAAGGATGTTGGTTGTTCTGAAGCAACTAGAGA TCATGTCATTCCTGCTAGAAACCAGCCCAACTTTGTTCGGTTGCTTAATTTTGCAGAAGATGTGAACCTTGCAATGGAAGCCTTAAGGAAATCTCAGGCT GCCTTTGCAGCTGCTGAAATAATTCTTGCAGAGACGGGCAATATGGAGGGCATTTCGTCTATTAAGAAGGTTCTTGATATGGGCTTCCATGATGTTGAGG GGTTATTGCAGCTGGTACGCTTTGCAATAGAGAGCCTCCGCAAAACTCCTTGA
AA sequence Show only first row Show all	>Potri.013G020200.2 pacid=42811494 polypeptide=Potri.013G020200.2.p locus=Potri.013G020200 ID=Potri.013G020200.2.v4.1 annot-version=v4.1 MGEGEIEEGEACDYTNNDDRNIDIDVALSYIDDKIQDILGQYQKDFEGGVSADTLGARFGGYGTFLPTYQRSPSIWSNPVAQQKVQSQGIQASSHDDQLA EGAMQNSTVSIRETVSARPEAASRSAFPLRVAKPLPEDRLVKPRRSREFISDFEPLKGPGNPSNQKVLKVRIKVGSDNCLPELKTSAIYSNLGLDMSPSS SSEDTDSPSECERDFPDSLEEHIYSPSCIVRIMTSSPIPSGAMLSPLRDCFLNLSEQGFWDRKRTVPVQECSAMQADEKVLVDKQKKPGDRSDRLELKNE HCNDPTNSFSACSKNESRMETSKGNHMLSDAGNHPPESKTTKVGKVAVGTGIIFRANLSEAKKELFSQKACKIHEVSAKATLTGKVQKDKKLGCEPRDNG SKGDKSLALFKDNYMPEEMRKCGDRTLDLTKQEFEKKKATHLQDDMKVSHGGKQLSTGKKKSKESKNDYSSTAGTSKNSMRIRLSAAPKEKIFQKSCKGD NALLEDLRKVKVKHTVSVSDRKARGNDSRSCLLGTSVEDETKDNTLEVPEKEPLAFRNKSKVSSGDKKSSFVSTSKENLRGDINDVAPLAGPLPTEVPTF LIEEDWVCCDKCHKWRLLPYGTNPNQLPQKWLCSMLDWLPGMNHCTFSEEETTDALHALYRLPIAGNHGDQLSHSVSAESSITLVNTLHDLDQNPQDPSF SGGKKKLEMKEVSHPAQYSVNKKRLNSTMKNEQVFIERRSLHNRSLSSLETKLEKRLGDVQPQKFKSMREADQEDFKLSKKARMEGMQYAVEDHNTGGIS KKEMGSNNKKYSSYRDVRYLSKDSTILNVEKHQFQKTMVTEDLDPMGIEGKKRKSDWMNSQIYPGNHSGNGQDNSISVEETSWSECRKERHSRKCKYEGK VSSASKGVCKLFGKEKINYLSQSTVDAKNSERRDLRDGLQCTEATSSPSLISSTCKVKINFPDVKGSPVESVCSSPLKISNRVSPRSFSGNHGCTDVGFC HFSGQTKCLEGESVGVSNWSGTLRKENAPVVAPIKEKSRDNYRHNDDKVEKKFTGQKVSSIKSLNNSTREDDQFGREGYEAMFRKMDGVFQKDCKSGAQN HSNSEFLDLLPSDTINQLEKSAGRHKSLDFLFFGNKKENQCWKSRESDALEVDGSSCDGLGRAPRQLGKDDGQNGIDDVMRRHPLLAASNILASNHLRND FFSQVANDALEGAKDLKHSADPLQISASGLQIAELFFQAALKFLHGASLFNPNNNNSTNNGNMTSAEMYGHAAKLCEYCASEFERCNDLASAFLARKCIE VAYMRVVYSNDLTASRDRYELQTVLQRVSAVESPSSSDSDVENLNSEVKVGKRQITKDVGCSEATRDHVIPARNQPNFVRLLNFAEDVNLAMEALRKSQA AFAAAEIILAETGNMEGISSIKKVLDMGFHDVEGLLQLVRFAIESLRKTP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G62900			CW-type Zinc Finger (.1)		Potri.013G020200 [exp]	0	1
AT1G64320			myosin heavy chain-related (.1...		Potri.001G094266 [exp]	1.73	0.8320
AT2G24350			RNA binding (RRM/RBD/RNP motif...		Potri.012G145050 [exp]	2.44	0.8066
AT2G38420			Pentatricopeptide repeat (PPR)...		Potri.006G106400 [exp]	2.82	0.7609
					Potri.009G083702 [exp]	4.24	0.8042
AT1G48050		KU80, ATKU80	ARABIDOPSIS THALIANA KU80 HOMO...		Potri.002G148200 [exp]	8.48	0.7856
AT1G04120		ATABCC5, ABCC5,...	MULTIDRUG RESISTANCE PROTEIN 5...		Potri.014G193400 [exp]	10.09	0.7764	Pt-MRP5.2
AT1G56440		TPR5	tetratricopeptide repeat 5, Te...		Potri.013G008400 [exp]	14.07	0.7579
AT3G18270		CYP77A5P	"cytochrome P450, family 77, s...		Potri.015G044400 [exp]	24.26	0.6853
AT1G76510	ARID		ARID/BRIGHT DNA-binding domain...		Potri.005G257300 [exp]	25.82	0.6963
AT1G05170			Galactosyltransferase family p...		Potri.004G013900 [exp]	26.11	0.7117

Compare expression of checked genes

Potri.013G020200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.