Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	SNF4.4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09020 716 / 0 ATSNF4, SNF4 homolog of yeast sucrose nonfermenting 4 (.1) AT1G27070 52 / 6e-07 5'-AMP-activated protein kinase-related (.1) AT5G03420 42 / 0.0007 5'-AMP-activated protein kinase-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G028800 [exp] 920 / 0 AT1G09020 683 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Potri.010G023500 [exp] 646 / 0 AT1G09020 613 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Potri.008G216800 [exp] 626 / 0 AT1G09020 628 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Potri.005G029300 [exp] 369 / 3e-127 AT1G09020 287 / 3e-95 homolog of yeast sucrose nonfermenting 4 (.1) Potri.005G029900 [exp] 286 / 2e-95 AT1G09020 249 / 1e-81 homolog of yeast sucrose nonfermenting 4 (.1) Potri.006G005800 [exp] 51 / 7e-07 AT4G16360 408 / 3e-145 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) Potri.016G006400 [exp] 49 / 3e-06 AT4G16360 415 / 5e-148 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) Potri.010G034600 [exp] 47 / 2e-05 AT1G27070 333 / 4e-108 5'-AMP-activated protein kinase-related (.1) Potri.008G194300 [exp] 45 / 8e-05 AT1G27070 367 / 3e-121 5'-AMP-activated protein kinase-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004490 [exp] 783 / 0 AT1G09020 754 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Lus10029909 [exp] 777 / 0 AT1G09020 749 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Lus10015179 [exp] 746 / 0 AT1G09020 735 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Lus10031501 [exp] 720 / 0 AT1G09020 701 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Lus10006516 [exp] 643 / 0 AT1G09020 648 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Lus10037503 [exp] 459 / 1e-161 AT1G09020 433 / 9e-152 homolog of yeast sucrose nonfermenting 4 (.1) Lus10037504 [exp] 167 / 7e-49 AT1G09020 195 / 5e-60 homolog of yeast sucrose nonfermenting 4 (.1) Lus10037424 [exp] 49 / 3e-06 AT5G21170 305 / 2e-104 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2) Lus10041287 [exp] 47 / 2e-05 AT5G21170 295 / 6e-100 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2) Lus10039076 [exp] 46 / 4e-05 AT4G16360 392 / 2e-138 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [poplar] [flax] CBS CBS domain CL0369 [poplar] [flax] GHD PF16561 [poplar] [flax] AMPK1_CBM Glycogen recognition site of AMP-activated protein kinase
Representative CDS sequence Show only first row Show all	>Potri.013G020400.2 pacid=42811801 polypeptide=Potri.013G020400.2.p locus=Potri.013G020400 ID=Potri.013G020400.2.v4.1 annot-version=v4.1 ATGTTTGGTTCTGGTTCCAGTACTGGCCATGATAATAGTGGTGTAAGTCCAGTGCGCTTCGTGTGGCCTTATGGAGGTGGAGAAGTGTCCATCTTTGGTA CCTTTACCAGGTGGACTGATCTTATACCCATGTCCCCGATGGAGGGGTGCCCTAATGTATATCAAGTTGTTATTAGCTTAGTTCCTGGATTGCATCAGTT CAAGTTCTATGTAGATGGACAATGGAGGGTTGATGAGCAGCTATCCTTCGTTAGTGGGCCTTATGGGCCGGTAAATACTGTTGTCTTAACTAAGGATCCT CCACAAATCATTGATTCTGAGACACCTGGGAGATCCAACATGGAGCTGGATGATGTTTCTGTTTGCTCGGAAGTAATCCAAGGGATGTCAGCAGCTGACT TGGAAGTTTCTCGTCATCGTATTTCTGCATTCTTGTCCACACATACTGCATATGAGTTGCTTCCAGAGTCAGGCAAGGTTATTGCCTTGGATGTTACTCT ACCTGTGAAGCGAGCCTTTCATATTCTCTATGAACAGGGCATCCCTACGGCTCCTCTCTGGGATTTTTGTAAGGGCCAGTTTGTTGGTGTGCTTGCTGCA TTGGACTTCATCTTGATTCTGAGGGAGCTTGGAACTCATGGATCTAATCTGACGGAGGAAGAATTAGAGACACATACTATATCTGCTTGGAAGGAAGGGA AAATGCATCTCAGCAGACAAATTGATGGCAGTGGGAGAGCATATTCTAAACATCTGATCCATGCAGGGCCATATGACTCGCTGAAAGATGTTGCTTCAAA AATTTTGCAAAACAGCATATCAACAGTTCCCATCCTTCATTCTTCTGCTCAGGATGGTTCATTTCCCCAGCTACTACATCTTGCTTCCTTGTCTGGAATA CTAAAATGTATATGCAGGTATTTCAGACATTCTGCTGGCTCCTTACCCATTCTTCAACAGCCAATTTGTTCAATTCCTTTGGGTACATGGGTTCCAAAAA TTGGGGAACCAAACAGACGACCATTTGCTATGTTGAAACCAAATGCTTCTCTCGGTGCTGCCCTCTCTTTGTTGGTTCAAGCCAATGTCAGTTCAATACC AATCGTAAATGATAATGATTCACTGCTGGATGTGTATTCTCGAAGTGATATCACTGCCTTGGCAAAAGATAAAGCCTATGCACAAATTCATCTTGATGAA ATAAGCATTCACCAGGCACTGCAGTTGGGTCAGGATGCAAATTCTTCTTATGGATTCTTCAATGGACAGAGATGTCAGATGTGTTTACGGACTGATTCTC TACACAAAGTGATGGAGCGATTGGCAAATCCTGGGGTTAGGAGACTTTTGATCGTGGAAGCTGGCAGCAAGCGTGTAGAAGGGGTTATCTCACTGAGTGA TGTCTTCAGGTTTCTGTTGGGGGTAGCTTAG
AA sequence Show only first row Show all	>Potri.013G020400.2 pacid=42811801 polypeptide=Potri.013G020400.2.p locus=Potri.013G020400 ID=Potri.013G020400.2.v4.1 annot-version=v4.1 MFGSGSSTGHDNSGVSPVRFVWPYGGGEVSIFGTFTRWTDLIPMSPMEGCPNVYQVVISLVPGLHQFKFYVDGQWRVDEQLSFVSGPYGPVNTVVLTKDP PQIIDSETPGRSNMELDDVSVCSEVIQGMSAADLEVSRHRISAFLSTHTAYELLPESGKVIALDVTLPVKRAFHILYEQGIPTAPLWDFCKGQFVGVLAA LDFILILRELGTHGSNLTEEELETHTISAWKEGKMHLSRQIDGSGRAYSKHLIHAGPYDSLKDVASKILQNSISTVPILHSSAQDGSFPQLLHLASLSGI LKCICRYFRHSAGSLPILQQPICSIPLGTWVPKIGEPNRRPFAMLKPNASLGAALSLLVQANVSSIPIVNDNDSLLDVYSRSDITALAKDKAYAQIHLDE ISIHQALQLGQDANSSYGFFNGQRCQMCLRTDSLHKVMERLANPGVRRLLIVEAGSKRVEGVISLSDVFRFLLGVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Potri.013G020400 [exp]	0	1	SNF4.4
AT5G20700			Protein of unknown function (D...		Potri.018G146800 [exp]	4.24	0.5708
AT5G19990		ATSUG1, RPT6A	regulatory particle triple-A A...		Potri.010G098300 [exp]	6.16	0.6310	A1.4
AT5G63220			unknown protein		Potri.010G217400 [exp]	6.63	0.6177
AT1G72770		HAB1	HYPERSENSITIVE TO ABA1, homolo...		Potri.003G044200 [exp]	13.19	0.6258
AT3G03940			Protein kinase family protein ...		Potri.019G034500 [exp]	16.73	0.5755
AT5G35980		YAK1	yeast YAK1-related gene 1 (.1....		Potri.013G075300 [exp]	24.08	0.5654
AT1G49980			DNA/RNA polymerases superfamil...		Potri.001G293600 [exp]	27.92	0.4860
AT3G17590		CHE1, BSH	BUSHY GROWTH, transcription re...		Potri.010G004100 [exp]	29.24	0.5367	Pt-BSH.1
AT2G32730			26S proteasome regulatory comp...		Potri.017G054400 [exp]	35.29	0.5772
AT1G70780			unknown protein		Potri.017G125300 [exp]	42.04	0.4779

Compare expression of checked genes

Potri.013G020400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.