Plant FIBer expression Database

Potri.013G020500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G05380 808 / 0 MYB ALY2, ATALY2 ARABIDOPSIS THALIANA ALWAYS EARLY 2, ALWAYS EARLY 2, DIRP ;Myb-like DNA-binding domain (.1.2.3.4.5)
AT3G21430 673 / 0 MYB ATALY3 ARABIDOPSIS THALIANA ALWAYS EARLY 3, ALWAYS EARLY 3, DNA binding (.2)
AT5G27610 516 / 1e-166 MYB ATALY1 ARABIDOPSIS THALIANA ALWAYS EARLY 1, ALWAYS EARLY 1, DIRP ;Myb-like DNA-binding domain (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G029000
[exp]
1738 / 0 AT3G05380 813 / 0.0 ARABIDOPSIS THALIANA ALWAYS EARLY 2, ALWAYS EARLY 2, DIRP ;Myb-like DNA-binding domain (.1.2.3.4.5)
Potri.008G216600
[exp]
771 / 0 AT3G21430 1006 / 0.0 ARABIDOPSIS THALIANA ALWAYS EARLY 3, ALWAYS EARLY 3, DNA binding (.2)
Potri.010G023201
[exp]
751 / 0 AT3G21430 939 / 0.0 ARABIDOPSIS THALIANA ALWAYS EARLY 3, ALWAYS EARLY 3, DNA binding (.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033961
[exp]
680 / 0 AT3G21430 941 / 0.0 ARABIDOPSIS THALIANA ALWAYS EARLY 3, ALWAYS EARLY 3, DNA binding (.2)
Lus10029910
[exp]
637 / 0 AT3G05380 549 / 1e-179 ARABIDOPSIS THALIANA ALWAYS EARLY 2, ALWAYS EARLY 2, DIRP ;Myb-like DNA-binding domain (.1.2.3.4.5)
Lus10004489
[exp]
498 / 5e-159 AT3G05380 558 / 0.0 ARABIDOPSIS THALIANA ALWAYS EARLY 2, ALWAYS EARLY 2, DIRP ;Myb-like DNA-binding domain (.1.2.3.4.5)
Lus10002879
[exp]
381 / 2e-114 AT3G21430 764 / 0.0 ARABIDOPSIS THALIANA ALWAYS EARLY 3, ALWAYS EARLY 3, DNA binding (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF06584 DIRP DIRP
Representative CDS sequence
>Potri.013G020500.2 pacid=42811154 polypeptide=Potri.013G020500.2.p locus=Potri.013G020500 ID=Potri.013G020500.2.v4.1 annot-version=v4.1
ATGGCCCCAACAAGGAAGAAAAGTGTGAATAAGCGGTTTCTGAATGAGGTATCGCCTGAAAAAGAAGTCAAGAGTTCAAGCAAAAATAAACAGCAGGCGA
ATGGGAAGAAGAAATTGTCCGATAAGTTAGGAACTCAGTGGAGCAAAGCAGATCTTCAACGATTTTACAAAGCATATCGGGACCATGGACAGAACTGGAA
GAAAGTTGCTGCTGAAGTGCGCAACAGATCTGTGGAAATGGTGGAGACACTTTACAATATGAATCGGGCATACTTGTCTCTTCCAGAGGGAACGGCTTCT
GTAGTTGGGCTTATAGCTATGATGACCGATCACTACAGTGTCCTGGAAGCAAGTGAGAGTGAACGAGAAAGCAATGAGGTACCTGGAGTGCTTAGGAAAC
TTCAGAAACGTAAGCAGCCAAAAGTGCAGCTTAGTGCATCAAAAGAAGATCTCCAGCAGTCTCACATGGTTGCATCAACTGATGGATGCTTATCATTTTT
AAAAATAGGATATGGCCGTCCACTTCATTCAGTTGGGAAAAGGACACCTCGCTTCCCTGTCTCTCATCAGCACAAGAAAGATGAAAATTATGTTTCACCA
AAGAAGAAGCACAGAAAGTCAGAGATCAATGCTGATGATAATGATGATGAACATGTTGCTGCACTGACATTAACTGAGACATTGCAGAGAGGAGACTCTG
CCCAAGTGCCTCAAACACCCCATAGAAGAACAGAACATATGAAATCATCACCTGTTCAAAGCTGGGATAAGATGCCAGAATCATCTCCAGAAAATCTTTG
TGATGCTTCCATATATGAACACTGGTCTGAAAGTGGCACAGGACGTGGGGGGCCTGATCTTGCCTATGTGAGGGATGCAAGCTCCTTGGCAGAAATGGAA
GGTATAGGTACTGTAGAAGTTCACCGAAAAGGCAAGAAGTTTTATGGAAAGAAGGTAAGAGTTGAGAAGATCGGAAATAGTCAGTCTGATGGTGGTGGAG
AAGCATGTAGTGGCACTGAAGAAGAACAGAAGGTCAGAACTTTGAAGGGAAAAGTTGAAATTGAGATGTCTAATGCAAAAATTGATGAGACTTCTTGCCG
GGGCCAAAGGAAGAGAAGCAAGAAACTTTTCTCAGATGATAAACATGATGACTTCATCGGTCTTCAAACATTGGCTCTTGTTTCTGCAATGGAATTTGAA
TCATCTGCCCAGTTGGATGAAGAAAGAACTGCCCAAACTGAGGACGACAAGTGCAGTGTACCTGAATCTGCATCAACTAGTCATCATAGAGAAAGAACCA
AACTCTCCAGGCAGAAAGAAAAGGCAATAAGTGGAGTTGACAGGATAACCTCAAGAAAATCTAAGCTTGGAAGATACCCGCCAATTTCTACTAAACCTGT
CTCTGAAGCAAATAAACAGCCTCAGTCCATCAGCAATGGTACTCTGAAAAGAAAACGCGAGGCTTTGGTATCAAAGGTTCTGGATGAAGAGGAGATTACA
CCTGTGGTTAAAGGCAGACACAGTGGTCAAATTTCTTCTCCTTCAAAACAATTAAATTCATTAGAATTGCCAGAGGGTTCTTCTTTCAGTGGTGATCAGA
AAAATGTACCAAATGATCTAGCAACTGCACAAGTTCCTGTTGCAAGCCAAGTTATCTTACCAACCAGAAAAGGAAGCAGACGCAAGATGGATTTAAAGAG
AGCAATGATCCCAAAAGTGGGGAAATCTTCTGTAAACATTCGGAAAAATCAAATTAATAGGCAAGATGGAGCAATCCACCTAAAGGACAAGCTTTCTTGT
AGTCTATCATCTCCTATGGTTCGCAGATGGTGTACATTTGAATGGTTTTACAGTGCAGTTGACTACCCTTGGTTTGCTAAAAGGGAGTTTGTGGAATATT
TAAATCATGTTGGTCTTGGGCACATTCCAAGGCTGACTCGTGTAGAATGGGGAGTCATAAGAAGTTCTCTTGGCAGACCTCGAAGGTTTTCTGAACGTTT
TCTACATGAAGAAAGAGAAAAACTCCAGCAGTATAGAGAATCCGTGAGAAAACATTATATGGAGCTCCGAATGGGTTTAAGGGAAGGACTTCCAACAGAT
TTAGCAAGACCCTTATCAGTTGGACAGCGAGTAATTGCTATTCATCCCAAAACAAGAGAACTTCATGATGGAGGTGTACTCACTGTGGATCATGACCAGT
GCAGGGTTCAGTTTGATCGTGCTGAGTTAGGAGTTGAATTTGTTAAGGATATAGATTGCATGCCTTCAAATCCACTGGATAACATGCCAGAAGCTCTTAG
GAGACAGAGAATCTCTGTTCTGCCCAGGGAATTGCTAGTGAATGGAAAGTCAAACGCGGGAGTGTTCACTGCCAGTGAACATCTGAGGAGTGCACTGAGT
CCCAAGAATGCTTTGGTAAAGCAGGCACAGGTCGAGGTAAACTGTGCCATCCCGCTTGCCAAGGGAGTATCTACTGACATTGTTAATGTACAAGGAGTCT
GTAGGCAACCTTCTATGGTAGCTCAGATCCAACCAAAGGAATCTGACATACAAGCTCTATCTGAACTGAATCGCGCTCTTGATAGAAAGGCATCATCTGC
TTTACTCCATCTGAGGCAACATAATACTTACCCCATAAACAACCTGCCTGGTTGGCTGAAACCCCCAGCCAATTCCTGTTTCTCTGGTATGCCAAGACCT
CATACTAGTTCTTTTGTTTCTCAAGAATCAGGATCTGCTGTACTTGAGATTGTCAGAGGCTCGAGATTAAAGGCACATAATATGGTAGATGTTGCTGTCC
AGGCAATTTCATCCATGAAAGAAGGCGAAGATACCTTTGTGAGAATTGGAGAGGCTTTAGATTCTATGGATAGAAGGCATTTGGGATCAGAATATAGGGT
ACAAATGATCAGGGCCCCAGAGGGGGTCAGTGGTGGTTTACGTCTTCAAAACCAGTTGATTCTCAGCACGTCAGAGCCTCAGGTTAACAGTAATGCATCT
AGGCCCCAATCAAATGATTCTGACAAAACAGAGACAGTAATTCCTTCAGACCTTATATCATCATGTGTGGCTGCTTTGCTCATGATACAGACATGCTCCG
AACGACAGTATCCTCCATCTGATGTGGCTCAGATAATCGATTCTGCTGTTACTAGCTTGCAACCCTGCTGTCCGCAAAATCTGCCAATATATAGAGAGAT
ACAAATGTGCATGGGAAGAATCAAGACTCAAATACTAGCTCTAATACCAACATGA
AA sequence
>Potri.013G020500.2 pacid=42811154 polypeptide=Potri.013G020500.2.p locus=Potri.013G020500 ID=Potri.013G020500.2.v4.1 annot-version=v4.1
MAPTRKKSVNKRFLNEVSPEKEVKSSSKNKQQANGKKKLSDKLGTQWSKADLQRFYKAYRDHGQNWKKVAAEVRNRSVEMVETLYNMNRAYLSLPEGTAS
VVGLIAMMTDHYSVLEASESERESNEVPGVLRKLQKRKQPKVQLSASKEDLQQSHMVASTDGCLSFLKIGYGRPLHSVGKRTPRFPVSHQHKKDENYVSP
KKKHRKSEINADDNDDEHVAALTLTETLQRGDSAQVPQTPHRRTEHMKSSPVQSWDKMPESSPENLCDASIYEHWSESGTGRGGPDLAYVRDASSLAEME
GIGTVEVHRKGKKFYGKKVRVEKIGNSQSDGGGEACSGTEEEQKVRTLKGKVEIEMSNAKIDETSCRGQRKRSKKLFSDDKHDDFIGLQTLALVSAMEFE
SSAQLDEERTAQTEDDKCSVPESASTSHHRERTKLSRQKEKAISGVDRITSRKSKLGRYPPISTKPVSEANKQPQSISNGTLKRKREALVSKVLDEEEIT
PVVKGRHSGQISSPSKQLNSLELPEGSSFSGDQKNVPNDLATAQVPVASQVILPTRKGSRRKMDLKRAMIPKVGKSSVNIRKNQINRQDGAIHLKDKLSC
SLSSPMVRRWCTFEWFYSAVDYPWFAKREFVEYLNHVGLGHIPRLTRVEWGVIRSSLGRPRRFSERFLHEEREKLQQYRESVRKHYMELRMGLREGLPTD
LARPLSVGQRVIAIHPKTRELHDGGVLTVDHDQCRVQFDRAELGVEFVKDIDCMPSNPLDNMPEALRRQRISVLPRELLVNGKSNAGVFTASEHLRSALS
PKNALVKQAQVEVNCAIPLAKGVSTDIVNVQGVCRQPSMVAQIQPKESDIQALSELNRALDRKASSALLHLRQHNTYPINNLPGWLKPPANSCFSGMPRP
HTSSFVSQESGSAVLEIVRGSRLKAHNMVDVAVQAISSMKEGEDTFVRIGEALDSMDRRHLGSEYRVQMIRAPEGVSGGLRLQNQLILSTSEPQVNSNAS
RPQSNDSDKTETVIPSDLISSCVAALLMIQTCSERQYPPSDVAQIIDSAVTSLQPCCPQNLPIYREIQMCMGRIKTQILALIPT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G05380 MYB ALY2, ATALY2 ARABIDOPSIS THALIANA ALWAYS EA... Potri.013G020500
[exp]
0 1
AT1G18950 DDT domain superfamily (.1) Potri.012G072200
[exp]
1.41 0.9183
AT5G51300 splicing factor-related (.1.2.... Potri.001G126400
[exp]
1.41 0.9214
AT2G45880 BZR BAM7, BMY4 BETA-AMYLASE 4, beta-amylase 7... Potri.014G083700
[exp]
2.00 0.8994
AT3G05380 MYB ALY2, ATALY2 ARABIDOPSIS THALIANA ALWAYS EA... Potri.005G029000
[exp]
3.16 0.8848
AT4G10710 SPT16 global transcription factor C ... Potri.013G004500
[exp]
4.24 0.8998 GTC903
Potri.009G040500
[exp]
5.47 0.8949
AT1G04210 Leucine-rich repeat protein ki... Potri.008G158600
[exp]
5.91 0.8966
AT4G31430 unknown protein Potri.006G275200
[exp]
7.21 0.8603
AT3G16890 PPR40 pentatricopeptide (PPR) domain... Potri.008G108300
[exp]
8.48 0.8490
AT3G08020 PHD finger family protein (.1) Potri.009G059500
[exp]
11.83 0.8763

Potri.013G020500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.