Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27560 436 / 3e-154 Domain of unknown function (DUF1995) (.1) AT5G48790 45 / 3e-05 Domain of unknown function (DUF1995) (.1) AT3G20680 41 / 0.001 Domain of unknown function (DUF1995) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G100300 [exp] 45 / 5e-05 AT5G48790 431 / 4e-153 Domain of unknown function (DUF1995) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029915 [exp] 474 / 8e-169 AT5G27560 429 / 4e-151 Domain of unknown function (DUF1995) (.1) Lus10029929 [exp] 464 / 2e-164 AT5G27560 425 / 5e-149 Domain of unknown function (DUF1995) (.1) Lus10004486 [exp] 276 / 7e-92 AT5G27560 252 / 1e-82 Domain of unknown function (DUF1995) (.1) Lus10007599 [exp] 58 / 4e-09 AT5G48790 413 / 3e-141 Domain of unknown function (DUF1995) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09353 [poplar] [flax] DUF1995 Domain of unknown function (DUF1995)
Representative CDS sequence Show only first row Show all	>Potri.013G020800.1 pacid=42810842 polypeptide=Potri.013G020800.1.p locus=Potri.013G020800 ID=Potri.013G020800.1.v4.1 annot-version=v4.1 ATGGCTACTTCAATCCCAAGCTGTTCCTTCCACTCCTACATGGCACCATCAATAATACCAAACAACTCAACCTCCACCACTCACTTTACCTTATCTTTTT CACACGCTAACTTAAGTGGGATTTCACTTTGTACAAGATCATCAAGAATCTTGGCAAAGTTTGAGAAATTCGAAGGTGATGATGCTTCTCAAGATAACCT TGAAGAGGCCATGGAGTTACAAGAACAAGCACAAACTGTTCAAGAAGAAGATGACAGCTGCCTGCCTTCTGACTTGGAGGGTGCCGTCCGGCAATCTAGC CAAGCTAGTGCTTTGTTTGTGTCTTCAGGAGGAATGAGAGCCATAGTCGAGCTCTTAATCCCTCAGCTTCAGTTTCTAGATGATGAAGGTGCACAGGCTG AGCTCTGGGAACTGTCAAGGATTTTTTTGGATACACTTATTGAAGAAACAGGAAGCCAGAGAATCAAAGCCATTTTTCCAGATGCCGGTGCTGCTGCACT TCTAAAATACCTGTGGAAAGATGCAGCTTTTGGGTTTTCAAGCTTAAGTGACCGGAAGCCTGTTCAGATCGAAGATGACATTGTTGTTATGGTTGTTCCT GATTATCAGATGTTGGAAAAAGTGCAGAAAATTGTATCTGATCTATCAGATGATCCGCCAAGGCCTCTTATCATGTGGAACCCGCGTCTCATCAGTGAGG ATGTAGGAGTTGGGATTAATGTACGGAATCTAAGGAGATACTTTCTGAGCACATTCACAACAGTTTATTCAATGAGACCTCTGCCAGCCGGTGCTGTCTT TAGGTGTTATCCAGAGATGTGGAAGGTCTTTTATGATGATAAAGATAGGCCAAACAGATATCTTCTTGCACAAGAATCCGTAAGACGTCCAGATGCGGAA GAAATCGAGATAATATTTGGAAATGCAGAAGAGAAATCTGAGCAGGGACCTTCTTTATTCAGCAAGGCAGCAGGCATTTTCTCTTCACTTAACCGATTCA TGAGAGTAATTTCCAAGTAG
AA sequence Show only first row Show all	>Potri.013G020800.1 pacid=42810842 polypeptide=Potri.013G020800.1.p locus=Potri.013G020800 ID=Potri.013G020800.1.v4.1 annot-version=v4.1 MATSIPSCSFHSYMAPSIIPNNSTSTTHFTLSFSHANLSGISLCTRSSRILAKFEKFEGDDASQDNLEEAMELQEQAQTVQEEDDSCLPSDLEGAVRQSS QASALFVSSGGMRAIVELLIPQLQFLDDEGAQAELWELSRIFLDTLIEETGSQRIKAIFPDAGAAALLKYLWKDAAFGFSSLSDRKPVQIEDDIVVMVVP DYQMLEKVQKIVSDLSDDPPRPLIMWNPRLISEDVGVGINVRNLRRYFLSTFTTVYSMRPLPAGAVFRCYPEMWKVFYDDKDRPNRYLLAQESVRRPDAE EIEIIFGNAEEKSEQGPSLFSKAAGIFSSLNRFMRVISK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G27560			Domain of unknown function (DU...		Potri.013G020800 [exp]	0	1
AT4G34240		ALDH3I1	aldehyde dehydrogenase 3I1 (.1...		Potri.001G412900 [exp]	2.00	0.9600
AT3G46100		ATHRS1	Histidyl-tRNA synthetase 1 (.1...		Potri.006G124400 [exp]	5.65	0.9518
AT1G08550		AVDE1, NPQ1	ARABIDOPSIS VIOLAXANTHIN DE-EP...		Potri.013G053100 [exp]	5.83	0.9631
AT5G16810			Protein kinase superfamily pro...		Potri.019G050500 [exp]	7.48	0.9272
AT2G03390			uvrB/uvrC motif-containing pro...		Potri.010G161600 [exp]	8.12	0.9466
AT4G37040		MAP1D	methionine aminopeptidase 1D (...		Potri.005G137400 [exp]	11.48	0.9527	MAP1.2
AT5G62790		PDE129, DXR	PIGMENT-DEFECTIVE EMBRYO 129, ...		Potri.012G080900 [exp]	14.42	0.9326	DXR.1
AT3G48000		ALDH2A, ALDH2B4	aldehyde dehydrogenase 2A, ald...		Potri.015G074100 [exp]	16.91	0.9379	Pt-ALDH1.3
AT2G27680			NAD(P)-linked oxidoreductase s...		Potri.009G146000 [exp]	19.23	0.9484
AT5G19460		ATNUDT20	nudix hydrolase homolog 20 (.1...		Potri.006G157700 [exp]	21.02	0.9278

Compare expression of checked genes

Potri.013G020800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.