Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-RGA.59
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 592 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 577 / 0 EFR EF-TU receptor (.1) AT3G47110 554 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 554 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 543 / 1e-176 Leucine-rich repeat protein kinase family protein (.1) AT2G24130 493 / 5e-158 Leucine-rich receptor-like protein kinase family protein (.1) AT5G46330 493 / 5e-156 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G44700 457 / 7e-142 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT1G17230 454 / 7e-142 Leucine-rich receptor-like protein kinase family protein (.1) AT5G65700 441 / 4e-138 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G030800 [exp] 1619 / 0 AT3G47570 576 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G031300 [exp] 1566 / 0 AT3G47570 574 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G031700 [exp] 1172 / 0 AT5G20480 368 / 3e-113 EF-TU receptor (.1) Potri.006G099100 [exp] 613 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G044500 [exp] 612 / 0 AT3G47570 764 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G145200 [exp] 610 / 0 AT3G47570 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G151400 [exp] 602 / 0 AT3G47570 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G020000 [exp] 600 / 0 AT3G47570 816 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G029900 [exp] 600 / 0 AT3G47570 645 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033330 [exp] 605 / 0 AT3G47570 783 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004827 [exp] 599 / 0 AT3G47570 812 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033329 [exp] 592 / 0 AT3G47570 794 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037310 [exp] 589 / 0 AT3G47570 744 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030903 [exp] 586 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030855 [exp] 584 / 0 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004388 [exp] 578 / 0 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10031043 [exp] 577 / 0 AT3G47570 756 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033384 [exp] 570 / 0 AT3G47570 739 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032306 [exp] 569 / 0 AT3G47570 792 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.013G020900.3 pacid=42812529 polypeptide=Potri.013G020900.3.p locus=Potri.013G020900 ID=Potri.013G020900.3.v4.1 annot-version=v4.1 ATGTCATACCATCAAAACTTCATTGTGACAGTCTTCTGTCTCATCTGTTATCTCATGCCAGCAAAATCAGCATTTGTTTGCAATTTTACTGATTGTCAAG CCCTTTTTAAATTCAAGGCAGGCATAATAAGTGATCCAGAAGGTCAACTCCAAGATTGGAAGGAAGCCAATCCCTTCTGTAACTGGACTGGAATTACATG CCACCAATCTATCCAAAACCGGGTTATAGATCTTGAGCTCACAAACATGGACTTACAAGGAAGTATATCACCATTTCTATCCAATCTTTCTCTTCTCACC AAGCTTTCTTTGCAGAGTAATAGTTTCCATGGAGAAATCCCAACTACCTTGGGAGTACTCTCACAGCTAGAATATCTGAATATGAGTGAAAATAAGCTCA CCGGTGCCTTTCCAGCTTCACTACATGGTTGCCAAAGCTTGAAATTTCTAGACTTGACTACCAACAGCCTGTCTGGGGTCATTCCTGAAGAACTTGGCTG GATGAAGAACCTGACATTTTTAGCTATCTCTCAAAACAACCTCTCTGGGGTCATTCCAGCCTTTTTATCAAACCTGACAGAATTGACCCGACTAGAATTA GCTGTGAATTACTTTACTGGTAAAATTCCATGGGAACTAGGAGCTTTGACCAGGCTAGAGATTTTGTATTTGCACCTGAACTTTCTTGAGGGAGCAATAC CTTCATCACTAAGTAATTGCACTGCATTACGTGAAATTTCATTGATTGAGAATCGGATATCAGGAGAACTCCCTGCTGAAATGGGGAACAAGCTCCAAAA CTTGCAGAAGTTGTATTTTATAAACAACAACATTTCTGGCAGGATTCCAGTGACATTCTCAAATCTTTCACAAATAACACTGCTTGATTTGAGTATCAAT TACTTAGAGGGTGAGGTTCCTGAGGAACTGGGGAAGTTGAAGAACCTTGAGATCCTTTACCTTCATAGCAACAACCTGGTTAGCAATTCTTCTCTCAGTT TTCTTACTGCTCTTACAAACTGTTCATTTCTGCAGAAACTGCACTTAGGCTCGTGCTTATTTGCTGGGAGTTTACCAGCTTCCATTGGGAATCTGTCAAA AGACCTCTATTATTTCAATCTTTTGAATAACCGTATAAGGGGAGAGATTCCAGATAGTATTGGCAACTTGAGTGGCCTCGTGACCCTCCATCTGTGGGAC AACCGATTGGATGGAACAATTCCAGCAACTTTTGGAAAGCTGAAGCTGTTGCAAAGACTATATTTGGGGAGAAACAAGCTTCAAGGTTCTATTCCAGATG AAATGGGGCAGATGGAAAACCTTGGTTTACTTGATCTTGGTAATAACTCCATAACTGGGTCAATCCCATCTTCACTTGGTAACCTCTCACAGTTGAGATA CCTGGACCTATCTCAGAATAGCTTATCAGGAAATATTCCCATCAAACTCAGCCAGTGCACTCTCATGATGCAACTGGATCTATCTTTTAACAATCTTCAG GGGCCTCTTCCACCAGAAATCACCCTTTTGGTTAACTTGAATCTCTTCCTCAACTTTTCAAATAACAATCTAGATGGGGAAATACCTGCAAGTATTGGAA AGCTGGTATCTGTACAAGCTATTGACTTGTCAGTGAATAAATTTTCTGGCATGATATCAAGTTCGATTGGAAGTTGTGCATCTTTGGAGTACTTGAACCT ATCCAAGAACATGATTGAAGGTACAATTCCAGAATCCTTGAAACAAATTACATATTTAAAAGTCCTGGACTTGTCTTTTAATCACTTAACAGGCAGAGTT CCGATCTGGCTTGCCAATGCCTCAGTGATGCAGAATTTTAATTTTTCCTATAATAGATTAACAGGAGAGGTTCCAAGTACGGGAAGGTTTAAAAATCTTA ATGGAAGCTCATTGATAGGAAATGCAGGCTTGTGTGGTGGTTCTGCACTAATGAGACTCCAGCCATGTGTGGTTCAGAAGAAAAGGAGAAAGGTAAGGAA ATGGGCATATTATTTGCTTGCAATTACGATTAGTTGTTCTTTATTGCTCTTGATATTTGTCTGGGTCTGCGTTCGAAAATTATTTAATAAGAAATCCGAG GCAGAATCTGAAGAACCAATTCTAATGGCTTCCCCATCCTTTCATGGAGGCCGAAATTTGACTCAAAGAGAGCTTGAAATTGCAACCAATGGTTTCAATG ATGCCAATCTCTTGGGGAGAGGAAGCTTTGGATCTGTTTATAAAGCATGGATTGATGATAGCATATCTTGTGTTGCGGTTAAGGTTCTAATTGAAGACAA TAGGCAGAGTTACAAAAGCCTAAAAAGGGAATGCCAAATATTGTCAGGAATTAAGCATCGGAATCTGGTTAAAATGATTGGATCAATCTGGAGTTCACAG TTCAAGGCTCTTATCCTTGAGTTTGTAGGTAATGGAAACTTGGAACAGCATCTTTATCCAAGTGAATCTGAAGGAGAAAATTGTCGATTGACATTGAAGG AAAGATTAGGAATAGCAATAGATATTGCAAATGCCTTGGAGTATCTTCATGTGGGATGCTCAACTCAAGTCGTGCACTGTGATCTGAAACCACAAAATGT TCTTCTTGACGATGATATGGTGGCCCATGTTGCTGATTTTGGAATAGGAAAGCTCATTTTTGCTGATAAACCAACTGAATATTCTACCACCACAAGTGTT GTGCGAGGATCTGTTGGTTATATTCCTCCAGAATATGGACAGAGTACTGAAGTATCATCTAGAGGAGACGTATATAGCTTCGGCCTCATGCTGCTTGAAT TGATAACGCGGAAGAAACCAACAAGCGAAATGTTTGCAGATGGACTTGATCTAAGGAAGTGGGTGGACGCTGCATTTCCTCACCATATTTTGGAAATTGT AGACATGTCATTGAAGCAGGAGTCACTTTCAGGAGATGCAAGTGGTGATTTACAAAAGCTGGAGCAATGCTGTCTTCAAGTGCTAAATGCAGGGATGATG TGCACAGAAGAGAACCCACTGAGGCGTCCACCGATCTCTTTGGTCACGGGAGAGCTTCAGCTTACTTGGAAAGAAATGGGATTTGACAGATTAAGCATGG CTGGAAAAGAATCATATGATTCTGACAGTGTTTGA
AA sequence Show only first row Show all	>Potri.013G020900.3 pacid=42812529 polypeptide=Potri.013G020900.3.p locus=Potri.013G020900 ID=Potri.013G020900.3.v4.1 annot-version=v4.1 MSYHQNFIVTVFCLICYLMPAKSAFVCNFTDCQALFKFKAGIISDPEGQLQDWKEANPFCNWTGITCHQSIQNRVIDLELTNMDLQGSISPFLSNLSLLT KLSLQSNSFHGEIPTTLGVLSQLEYLNMSENKLTGAFPASLHGCQSLKFLDLTTNSLSGVIPEELGWMKNLTFLAISQNNLSGVIPAFLSNLTELTRLEL AVNYFTGKIPWELGALTRLEILYLHLNFLEGAIPSSLSNCTALREISLIENRISGELPAEMGNKLQNLQKLYFINNNISGRIPVTFSNLSQITLLDLSIN YLEGEVPEELGKLKNLEILYLHSNNLVSNSSLSFLTALTNCSFLQKLHLGSCLFAGSLPASIGNLSKDLYYFNLLNNRIRGEIPDSIGNLSGLVTLHLWD NRLDGTIPATFGKLKLLQRLYLGRNKLQGSIPDEMGQMENLGLLDLGNNSITGSIPSSLGNLSQLRYLDLSQNSLSGNIPIKLSQCTLMMQLDLSFNNLQ GPLPPEITLLVNLNLFLNFSNNNLDGEIPASIGKLVSVQAIDLSVNKFSGMISSSIGSCASLEYLNLSKNMIEGTIPESLKQITYLKVLDLSFNHLTGRV PIWLANASVMQNFNFSYNRLTGEVPSTGRFKNLNGSSLIGNAGLCGGSALMRLQPCVVQKKRRKVRKWAYYLLAITISCSLLLLIFVWVCVRKLFNKKSE AESEEPILMASPSFHGGRNLTQRELEIATNGFNDANLLGRGSFGSVYKAWIDDSISCVAVKVLIEDNRQSYKSLKRECQILSGIKHRNLVKMIGSIWSSQ FKALILEFVGNGNLEQHLYPSESEGENCRLTLKERLGIAIDIANALEYLHVGCSTQVVHCDLKPQNVLLDDDMVAHVADFGIGKLIFADKPTEYSTTTSV VRGSVGYIPPEYGQSTEVSSRGDVYSFGLMLLELITRKKPTSEMFADGLDLRKWVDAAFPHHILEIVDMSLKQESLSGDASGDLQKLEQCCLQVLNAGMM CTEENPLRRPPISLVTGELQLTWKEMGFDRLSMAGKESYDSDSV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G47570			Leucine-rich repeat protein ki...		Potri.013G020900 [exp]	0	1	Pt-RGA.59
AT4G35270		NLP2	Plant regulator RWP-RK family ...		Potri.009G166932 [exp]	6.85	0.8409
AT1G72040			P-loop containing nucleoside t...		Potri.019G081600 [exp]	8.48	0.8377
AT4G38360		LAZ1	LAZARUS 1, Protein of unknown ...		Potri.004G204600 [exp]	8.48	0.8236
AT2G32700		MUM1, LUH	MUCILAGE-MODIFIED 1, LEUNIG_ho...		Potri.002G241800 [exp]	10.67	0.8320
AT1G15410			aspartate-glutamate racemase f...		Potri.003G061800 [exp]	11.57	0.7602
AT3G23160			Protein of unknown function (D...		Potri.010G074000 [exp]	12.24	0.8075
AT2G22010		RKP	related to KPC1 (.1.2)		Potri.007G081900 [exp]	13.74	0.8157
AT1G28440		HSL1	HAESA-like 1 (.1)		Potri.007G135400 [exp]	16.97	0.7938
AT1G30410		ATMRP13, ABCC12	ATP-binding cassette C12, mult...		Potri.004G034800 [exp]	21.49	0.8014
AT3G18640	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.007G107800 [exp]	21.63	0.8175

Compare expression of checked genes

Potri.013G020900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.