Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05345 288 / 1e-98 Chaperone DnaJ-domain superfamily protein (.1) AT2G42750 52 / 2e-07 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G23240 42 / 0.0004 DNAJ heat shock N-terminal domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G031466 [exp] 77 / 3e-18 AT3G05345 68 / 2e-15 Chaperone DnaJ-domain superfamily protein (.1) Potri.014G143400 [exp] 47 / 9e-06 AT2G42750 416 / 2e-146 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.005G240700 [exp] 45 / 1e-05 AT2G17880 105 / 2e-29 Chaperone DnaJ-domain superfamily protein (.1) Potri.001G347600 [exp] 44 / 4e-05 AT5G23240 149 / 2e-41 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.007G072600 [exp] 43 / 0.0002 AT5G23240 461 / 4e-160 DNAJ heat shock N-terminal domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004485 [exp] 276 / 2e-93 AT3G05345 287 / 2e-98 Chaperone DnaJ-domain superfamily protein (.1) Lus10029916 [exp] 256 / 8e-86 AT3G05345 277 / 2e-94 Chaperone DnaJ-domain superfamily protein (.1) Lus10029928 [exp] 208 / 2e-67 AT3G05345 205 / 1e-66 Chaperone DnaJ-domain superfamily protein (.1) Lus10000158 [exp] 80 / 1e-18 AT3G05345 102 / 7e-28 Chaperone DnaJ-domain superfamily protein (.1) Lus10020749 [exp] 53 / 9e-08 AT2G42750 455 / 1e-161 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10040990 [exp] 49 / 3e-06 AT5G23240 442 / 8e-153 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10008768 [exp] 43 / 0.0001 AT5G23240 141 / 6e-39 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10022246 [exp] 42 / 0.0004 AT5G23240 139 / 2e-37 DNAJ heat shock N-terminal domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain CL0344 [poplar] [flax] 4Fe-4S PF13459 [poplar] [flax] Fer4_15 4Fe-4S single cluster domain
Representative CDS sequence Show only first row Show all	>Potri.013G021000.1 pacid=42811410 polypeptide=Potri.013G021000.1.p locus=Potri.013G021000 ID=Potri.013G021000.1.v4.1 annot-version=v4.1 ATGGAGTCCTTGTGTTTCTACAGTTCTCTCCCTCCAATCCCTCCATTTCAAAAAACCGTTACAAACCCCAATAACTGTCACAACTTTCCCTCCAAAACAA TCCCAATTCGTTTATTCCCTTCTCTTTCAACTTCTTCTAAGTTCAAGCCTCATTGCTTAGGGAGAGCTGAAGAGGATTCCCCTCTCTCCACTTCTTCAGC TTACACAGTACTTGGCATCAAGCCTGGTTGCTCTGCTGCCGCGATCAAAGCAGCTTTCAGGGCTAAAGTGAAGCAATTTCATCCTGATCTTAATAAGGAT GGCAAGGTCTCTGATTTAATGATTCGCCGCGTAATTCAAGCGTATGAGATGTTATCTAATTTCAGCCGACCAGAGATCATTGAAAGGGAATGTTTGGATC CATTTGAAGAGCCAGAGTGTGAAGCATTTGATATCTTTGTTAATGAAGTTCTTTGTGTCGGCAAAGGGTGTCCATATTCATGCGTACAAAGAGCCCCTTA TGCCTTCACTTATGCTTCTTCAACTGGAACTGCACGGGCGACATCTCAAGGGCATGGCGAAGACTACCAAGTTCAGCTTGCAGTTGGTCAATGCCCCAGA AGCTGTATTCATTATGTTACACCTTCACAGAGAATTATACTTGAGGAATTACTTGACAGTATCTTGGAGGTGCCTTATGATTGTTCAGCTGAGGCAGACT TGCTTTATTCACTTATCGTTAAAGCTAGGTTCGAGAACAATCGGTTCAGGAAGCCAAAGAAGCAACCAAAGACCTCAACCGAACATGTAGATTGGTTTTG A
AA sequence Show only first row Show all	>Potri.013G021000.1 pacid=42811410 polypeptide=Potri.013G021000.1.p locus=Potri.013G021000 ID=Potri.013G021000.1.v4.1 annot-version=v4.1 MESLCFYSSLPPIPPFQKTVTNPNNCHNFPSKTIPIRLFPSLSTSSKFKPHCLGRAEEDSPLSTSSAYTVLGIKPGCSAAAIKAAFRAKVKQFHPDLNKD GKVSDLMIRRVIQAYEMLSNFSRPEIIERECLDPFEEPECEAFDIFVNEVLCVGKGCPYSCVQRAPYAFTYASSTGTARATSQGHGEDYQVQLAVGQCPR SCIHYVTPSQRIILEELLDSILEVPYDCSAEADLLYSLIVKARFENNRFRKPKKQPKTSTEHVDWF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G05345			Chaperone DnaJ-domain superfam...		Potri.013G021000 [exp]	0	1
AT1G55850		ATCSLE1	cellulose synthase like E1 (.1...		Potri.006G004300 [exp]	2.64	0.9438
AT5G54250		HLM1, DND2, ATC...	DEFENSE, NO DEATH 2, cyclic nu...		Potri.001G407800 [exp]	5.74	0.9212
AT5G03650		SBE2.2	starch branching enzyme 2.2 (....		Potri.006G115100 [exp]	10.09	0.9038
AT4G31390			Protein kinase superfamily pro...		Potri.006G275600 [exp]	13.30	0.9385
AT3G27925		DEGP, DegP1, DE...	DegP protease 1 (.1)		Potri.001G348800 [exp]	13.41	0.9337
AT1G66670		NCLPP3, NCLPP4,...	CLP protease proteolytic subun...		Potri.004G092100 [exp]	13.60	0.9308
AT3G11210			SGNH hydrolase-type esterase s...		Potri.006G100300 [exp]	13.85	0.9435	CPRD49.3
AT2G36950			Heavy metal transport/detoxifi...		Potri.016G093100 [exp]	17.94	0.9177
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Potri.015G047500 [exp]	20.19	0.9208
AT3G19900			unknown protein		Potri.010G169700 [exp]	21.72	0.9251

Compare expression of checked genes

Potri.013G021000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.