Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05340 859 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G25970 385 / 2e-124 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G33680 385 / 3e-124 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 388 / 9e-124 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49170 387 / 1e-123 EMB2261 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G13650 392 / 2e-123 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G13600 381 / 6e-123 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G21300 381 / 4e-121 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G09950 384 / 5e-121 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49710 377 / 5e-121 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G018700 [exp] 443 / 1e-144 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G058900 [exp] 432 / 2e-138 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G136200 [exp] 404 / 2e-131 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.013G006800 [exp] 401 / 1e-130 AT2G33680 780 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G111300 [exp] 402 / 1e-128 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G164900 [exp] 400 / 1e-128 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G146800 [exp] 394 / 8e-128 AT3G25970 805 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G021700 [exp] 390 / 4e-126 AT3G47840 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G104700 [exp] 389 / 1e-125 AT2G13600 834 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031504 [exp] 850 / 0 AT3G05340 754 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018978 [exp] 418 / 4e-133 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030249 [exp] 406 / 2e-132 AT3G25970 747 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016425 [exp] 398 / 3e-128 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10015898 [exp] 388 / 7e-125 AT2G13600 899 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10009269 [exp] 385 / 7e-125 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014594 [exp] 386 / 5e-124 AT3G02330 901 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021232 [exp] 384 / 1e-123 AT2G33680 818 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030908 [exp] 393 / 3e-122 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10030581 [exp] 392 / 1e-121 AT1G68930 910 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.013G021100.1 pacid=42811318 polypeptide=Potri.013G021100.1.p locus=Potri.013G021100 ID=Potri.013G021100.1.v4.1 annot-version=v4.1 ATGAAATCCAAATGGGTAATCCACAAACTGAATTCCCATATTCCCTCATGGGCGACCTCCTTGACATCTCCACTCAAAGCAAAAACCTATCACACCCCAT CTTCAAAGACTTCATCTTTTCTTCTCAACCATGTAGATATAGGCCACCTCTTGTCCATTTGTGGAAGAGAAGGTTACCTTCATTTAGGTTCTTCTCTCCA TGCCTCTATAATCAAAACCCACGAATTCTTTAATCCCCTAGAACAAAATGCCTTTGTCATTTGGAATTCTCTCCTTTCTATGTACGCAAAAAATGGGGTC TTAACTGATGCTGCTAAGTTGTTTGATGAAATGCCCATGAGAGATACTGTGTCTTGGAATATAATGATTTCTGGGTTTTTAAAAGATGGGAGTTTTGATG TGGGCTTTGGGTTCTTTAAACAGATGCAAAGTTTGGGTTTTTATAGGCTAGATCAAGCAACTTTGACCACGATTTTATCAGCTTGCGATAGGCCTGAGCT TGGTTTTGTTAACAAGATGGTGCATTGTTTGGCGGTTTTAAATGGTTTTCAGAGGGAAATAAGTGTAGGGAATGCGTTGATAACATCTTATTTTAAATGT GGTTTTTCTAGTTCAGGAATGCAGGTTTTTGATGAGATGCTTGAAAGGAATGTTATTACCTGGACTGCAATAATATCAGGGCTAGTACAAAGTGAATTAT ACAGGGATAGTTTGAGATTGTTTGTGGAAATGACTAATGGATTGGTAGAACCGAATTCTTTGACGTATTTGAGTTCATTGATGGCATGTTCAGGTCTGCA GGCATTGAGAGAAGGGTGTCAAATTCATGGACGTGTATGGAAATTGGGTCTTCAATCAGATTTCTGTGTTGAAAGTGCGCTCATGGACATGTATTCGAAA TGTGGAAGCATGGGAGATACTTTGCAGATTTTTGAGTCTGCAGGACAACTTGATAAGGTTTCCATGACTATAATTCTTGCGGGTTTTGCACAAAATGGGT TTGAGGAAGAAGCTATGCAATTTTTTGTGAAAATGTTAGAGGCAGGAACTGAGATTGATTCCAACATGGTTTCAGCTGTCCTTGGGGTTTTTGGTGCAGA TACATCCTTGGGTCTTGGCCAGCAAATTCACTCATTAGTTATCAAACGGAGCTTTGGTTCTAATCCCTTTGTTGGCAATGGGCTTATTAATATGTACTCA AAGTGTGGAGATTTGGAGGATTCGACCAAAGTCTTCAGTCGAATGCCTTGCATGAACTCAGTCTCTTGGAACTCTATGATAGCTGCTTTTGCTCGTCACG GGGATGGCTCTAGAGCACTGCAGTTATATAAAGAGATGAGATTGAAAGGTGTAGAGCCAACAGATGTTACATTTCTCTCATTGCTTCATGCGTGTAGCCA TGTAGGCTTAGTTGAAAAGGGCATGGAGTTCTTAAAATCCATGACTGAAGTTCATAAGCTTACTCCTAGAATGGAGCACTATGCTTGTGTTGTTGACATG TTAGGTCGAGCAGGGCTTCTTAATGAAGCCAAGACTTTTATTGAGGGATTACCTATAAAGCCTGACGTGCTTGTTTGGCAAGCATTGCTAGGAGCTTGTG GCATTCATGGAGATCCTGAAATGGGGAAATATGCAGCTGAGCACTTAATTTTATCAGCACCTGAGAAGCCTTCTCCTTACATTTTGTTGGCGAATATATA TTCTTCTAAAGGAAGATGGAAAGAAAGAGCAAAGACTATTAAGAGAATGAAAGAAATGTGTGTTGCCAAAGAAACTGGAATAAGTTGGATTGAGATTGAA AATAACTTGCACAGCTTTGTTGTCGAAGATAAAATGCACCCACAAGCTGAGATCATATATGGAGTTTTGGCAGAGTTGTTTGGGCACATGATAGATGAAG GTTATGTGCCAGACAAGAGATACATTCTCTCCTACGTGAATCAAGATGAAAAGGGATTGCTGATGAATGATGATCGATTACTAGCTAGTAAACTAAGCTG TGAAGAAAATTAA
AA sequence Show only first row Show all	>Potri.013G021100.1 pacid=42811318 polypeptide=Potri.013G021100.1.p locus=Potri.013G021100 ID=Potri.013G021100.1.v4.1 annot-version=v4.1 MKSKWVIHKLNSHIPSWATSLTSPLKAKTYHTPSSKTSSFLLNHVDIGHLLSICGREGYLHLGSSLHASIIKTHEFFNPLEQNAFVIWNSLLSMYAKNGV LTDAAKLFDEMPMRDTVSWNIMISGFLKDGSFDVGFGFFKQMQSLGFYRLDQATLTTILSACDRPELGFVNKMVHCLAVLNGFQREISVGNALITSYFKC GFSSSGMQVFDEMLERNVITWTAIISGLVQSELYRDSLRLFVEMTNGLVEPNSLTYLSSLMACSGLQALREGCQIHGRVWKLGLQSDFCVESALMDMYSK CGSMGDTLQIFESAGQLDKVSMTIILAGFAQNGFEEEAMQFFVKMLEAGTEIDSNMVSAVLGVFGADTSLGLGQQIHSLVIKRSFGSNPFVGNGLINMYS KCGDLEDSTKVFSRMPCMNSVSWNSMIAAFARHGDGSRALQLYKEMRLKGVEPTDVTFLSLLHACSHVGLVEKGMEFLKSMTEVHKLTPRMEHYACVVDM LGRAGLLNEAKTFIEGLPIKPDVLVWQALLGACGIHGDPEMGKYAAEHLILSAPEKPSPYILLANIYSSKGRWKERAKTIKRMKEMCVAKETGISWIEIE NNLHSFVVEDKMHPQAEIIYGVLAELFGHMIDEGYVPDKRYILSYVNQDEKGLLMNDDRLLASKLSCEEN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G05340			Tetratricopeptide repeat (TPR)...		Potri.013G021100 [exp]	0	1
AT3G09040			Pentatricopeptide repeat (PPR)...		Potri.005G187800 [exp]	1.00	0.8578
AT4G26900		HISN4, HISHF, A...	HIS HF (.1)		Potri.001G267400 [exp]	2.44	0.8398	HF.1
AT5G62600		MOS14	modifier of snc1-1, 14, ARM re...		Potri.012G073600 [exp]	2.64	0.8002
AT4G02120			CTP synthase family protein (....		Potri.014G123200 [exp]	6.48	0.8019
AT3G52140			tetratricopeptide repeat (TPR)...		Potri.009G065300 [exp]	7.34	0.8083
AT4G15010			Mitochondrial substrate carrie...		Potri.001G222400 [exp]	7.74	0.8024
AT2G05120			Nucleoporin, Nup133/Nup155-lik...		Potri.002G221300 [exp]	10.39	0.7919
AT2G04560		AtLpxB	lipid X B, transferases, trans...		Potri.014G160300 [exp]	13.60	0.7449
AT1G02060			Tetratricopeptide repeat (TPR)...		Potri.014G056400 [exp]	17.23	0.7962
AT3G56900			Transducin/WD40 repeat-like su...		Potri.016G030400 [exp]	18.49	0.7750

Compare expression of checked genes

Potri.013G021100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.