Plant FIBer expression Database

Potri.013G021200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G09010 1457 / 0 glycoside hydrolase family 2 protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10029917
[exp]
1526 / 0 AT1G09010 1407 / 0.0 glycoside hydrolase family 2 protein (.1)
Lus10004484
[exp]
1330 / 0 AT1G09010 1183 / 0.0 glycoside hydrolase family 2 protein (.1)
Lus10000159
[exp]
416 / 1e-137 AT1G09010 361 / 1e-117 glycoside hydrolase family 2 protein (.1)
Lus10024155
[exp]
45 / 0.0003 AT3G54440 1594 / 0.0 glycoside hydrolase family 2 protein (.1.2.3)
Lus10039520
[exp]
44 / 0.0006 AT3G54440 968 / 0.0 glycoside hydrolase family 2 protein (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0058 Glyco_hydro_tim PF02836 Glyco_hydro_2_C Glycosyl hydrolases family 2, TIM barrel domain
Representative CDS sequence
>Potri.013G021200.5 pacid=42811723 polypeptide=Potri.013G021200.5.p locus=Potri.013G021200 ID=Potri.013G021200.5.v4.1 annot-version=v4.1
ATGGCAGAGATAGGGAAGACAGTGCTTGATTCAGGATGGTTAGCTGCTAGATCAACTGAGGTTCATCTCAGTGGGACCCAACTCACTACCACTCATTCTC
CTTCTGGTCTTGATAAGCCATGGATGGAAGCTGCTGTTCCTGGAACTGTTTTGGGAACCCTGGTGAAGAACAAAGCTGTTCCTGATCCTTTTTATGGGTT
AGGAAACGAAGTGATTATTGATATAGCTGATTCTGGAAGGGAGTATTATACATTCTGGTTCTTCACAACTTTTCAGTGTAAGCTGTCAGCAAACCAGCAT
CTGGATCTGAATTTTCGTGGAATCAATTACTCGGCAGAACTATATTTAAATGGAAACAAGAAGATCTTGCCAAAGGGGATGTTTCGAAGACATTCTCTTG
ATGTTACTGATATTCTACATCCTGATGGTCAGAACTTGCTTGCTGTTCTGGTTCACCCTCCAGATCATCCTGGTACAATTCCCCCAGAAGGGGGGCAGGG
TGGTGATCATGAGATTGGAAAAGATGTTGCCACGCAATATGTTGAGGGTTGGGATTGGATGGCTCCTATAAGGGATAGGAATACTGGCATATGGGATGAG
GTATCGATTTCCATCACTGGGCCAGTGAAAATAATAGATCCCCACTTGGTTTCAACCTTTTTTGATGGTTACAAGAGGGTATATCTGCATACTACAACAG
AGTTGGAAAACAAAAGTTCCTCGGTTGTTGAATGTGACCTGAACATCCAAGTGACATCAGAACTTGAAGGAGGTGTTTGCATAGTAGAACATCTTCAGAC
TCAACAGCTGTCTATCCCCTCTGGAAAACGTGTTCAACATACATTTCCTCAGCTTTTTTTCTACAAGCCCAACTTATGGTGGCCAAATGGAATGGGAAAG
CAAGCATTATACAATGTCACTATTACTGTTGATGTAAAGGGACATGGAGAGTCTGACTCATGGAGCCATATGTATGGATTCCGTAAAATTGAGAGCTATA
TTGATAGTGCAACTGGTGGAAGGTTGTTCAAGGTCAATGGGCAGCCTATTTTTATCCGCGGTGGTAATTGGATATTGTCGGATGGGTTGCTAAGGCTTTC
TAAAAAACGCTACAAAACAGACATCAAGTTTCATGCAGATATGAATTTTAACATGATCCGTTGTTGGGGTGGTGGATTAGCTGAGAGGCCAGAGTTCTAT
CATTACTGTGACATCTATGGTTTGCTGGTGTGGCAAGAATTTTGGATAACTGGAGATGTTGATGGAAGAGGTGTCCCTGTTTCAAATCCAAATGGTCCAC
TTGACCATGACCTTTTTATGCTATGTGCAAGAGACACTGTCAAGCTTCTACGAAATCATCCTAGTCTTGCTCTTTGGGTGGGTGGAAATGAACAAGTTCC
ACCACCTGACATCAACAATGCTTTAAAGGATGAGCTGAAGCTCCATCCTTATTTTGAGAGTCTCCATAACACTGGCAAGTCTGTGCAAGAACTGTCTGCA
AGTGTGAAAGATCCTAGTAATTATCTTGATGGTACACGCATTTATATCCAAGGATCAATGTGGGATGGCTTTGCAAATGGAAAGGGGGACTTCACTGATG
GTCCTTATGAAATACAATACCCAGAAAGTTTCTTCAAGGATGATTTTTACAACTATGGATTCAATCCTGAGGTTGGTTCTGTTGGAGTGCCAGTTGCTGC
TACCATCAAAGCTACAATGCCTCCAGAAGGATGGAAAATTCCATTGTTTAAGAAGCTTCCAGATGGGTATGTAGAAGAAGTGCCAAACCCCATATGGGAA
TACCACAAATACATTCCTTATTCAAAACCAGGCAAGGTTCACAATCAGATTCTACTATATGGGACTCCAACAGATCTTAATGATTTTTGCTTGAAGGCTC
AGCTTGTAAACTACATTCAGTATAGAGCTCTATTGGAAGGCTGGACGTCTCGTATGTGGAGCAAATACACTGGTGTTTTGATTTGGAAGACTCAGAATCC
TTGGACAGGTCTTAGAGGTCAGTTTTATGACCATCTACACGACCAAACAGCAGGTTTTTATGGCTGTCGCAGTGCTGCAGAGCCAGTCCATGTCCAGCTA
AATTTGGCTACGTATTTTATTGAGGTTGTTAATACTCTGTCAGAGCAACTATCTGATGTTGCCATAGAAGCATCGGTATGGGATCTCGAAGGAACATGCC
CATATTATGTAGTGCATGAAAAGCTCTCTGTTCCTTCAAAGAAAACAGTACCCATACTTGAGATGAAATATCCAAAATCAAAAAACCCAAAGCCAGTCTA
CTTTCTTCTTCTCAAACTCTACAAGATGTCAGATTATGGGGTTATATCTAGGAATTTTTACTGGTTGCATCTGCCTGGTGGAGACTACAAACTGTTGGAG
CCATACAGGAAGAAGAGAGTTCCCCTTAAGATTAGATCGACCACTTTTATCAAAGGGTCCACTTATGAAATGGAAATGCACGTCGAAAACAAGTCCAAAA
AGCCAGACTCAAAAAGTTTAACCTACAAGAATAATTTTGTTACCAGAATTGGTGATGGTGATTTTGACATGGCCTCAGTGGAGCCTGTAAATAGTGCAGC
TGAGGAAAAACAGGAGGCTAGTTTATTCCAGAGGATCTACAGACGTTTTTCAGGGGAAACTGATGATTTGCAGGTTTCTGAAATTAACGGCTCTGATGAA
GGAGTTGCTTTTTTCCTATATTTCTCTGTTCATGCTTCGGAACCAGGCCACAAGGAAGGAGAAGATACAAGAATTCTCCCAGTCCATTACTCAGACAACT
ACTTTTCACTTGTACCCGGAGAGGTGATGCCCATCAAGATATCTTTTGAAGTTCCTCCAGGTGTTACCCCGCGGATAAGACTCCATGGCTGGAATTACCA
CAGTGGACACAAAGTTTATTGA
AA sequence
>Potri.013G021200.5 pacid=42811723 polypeptide=Potri.013G021200.5.p locus=Potri.013G021200 ID=Potri.013G021200.5.v4.1 annot-version=v4.1
MAEIGKTVLDSGWLAARSTEVHLSGTQLTTTHSPSGLDKPWMEAAVPGTVLGTLVKNKAVPDPFYGLGNEVIIDIADSGREYYTFWFFTTFQCKLSANQH
LDLNFRGINYSAELYLNGNKKILPKGMFRRHSLDVTDILHPDGQNLLAVLVHPPDHPGTIPPEGGQGGDHEIGKDVATQYVEGWDWMAPIRDRNTGIWDE
VSISITGPVKIIDPHLVSTFFDGYKRVYLHTTTELENKSSSVVECDLNIQVTSELEGGVCIVEHLQTQQLSIPSGKRVQHTFPQLFFYKPNLWWPNGMGK
QALYNVTITVDVKGHGESDSWSHMYGFRKIESYIDSATGGRLFKVNGQPIFIRGGNWILSDGLLRLSKKRYKTDIKFHADMNFNMIRCWGGGLAERPEFY
HYCDIYGLLVWQEFWITGDVDGRGVPVSNPNGPLDHDLFMLCARDTVKLLRNHPSLALWVGGNEQVPPPDINNALKDELKLHPYFESLHNTGKSVQELSA
SVKDPSNYLDGTRIYIQGSMWDGFANGKGDFTDGPYEIQYPESFFKDDFYNYGFNPEVGSVGVPVAATIKATMPPEGWKIPLFKKLPDGYVEEVPNPIWE
YHKYIPYSKPGKVHNQILLYGTPTDLNDFCLKAQLVNYIQYRALLEGWTSRMWSKYTGVLIWKTQNPWTGLRGQFYDHLHDQTAGFYGCRSAAEPVHVQL
NLATYFIEVVNTLSEQLSDVAIEASVWDLEGTCPYYVVHEKLSVPSKKTVPILEMKYPKSKNPKPVYFLLLKLYKMSDYGVISRNFYWLHLPGGDYKLLE
PYRKKRVPLKIRSTTFIKGSTYEMEMHVENKSKKPDSKSLTYKNNFVTRIGDGDFDMASVEPVNSAAEEKQEASLFQRIYRRFSGETDDLQVSEINGSDE
GVAFFLYFSVHASEPGHKEGEDTRILPVHYSDNYFSLVPGEVMPIKISFEVPPGVTPRIRLHGWNYHSGHKVY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G09010 glycoside hydrolase family 2 p... Potri.013G021200
[exp]
0 1
AT3G13750 BGAL1 beta-galactosidase 1, beta gal... Potri.001G200400
[exp]
3.00 0.8369 BGAL1.1
AT5G49800 Polyketide cyclase/dehydrase a... Potri.004G231000
[exp]
7.48 0.7945
AT4G03110 AtRBP-DR1 RNA-binding protein-defense re... Potri.002G214000
[exp]
10.90 0.7609
AT1G14685 BBR_BPC BBR/BPC2, ATBPC... basic pentacysteine 2 (.1.2.3) Potri.012G040700
[exp]
11.83 0.7229 GBP.6
AT5G04310 Pectin lyase-like superfamily ... Potri.010G229000
[exp]
15.09 0.7617
AT4G21530 APC4 anaphase promoting complex 4, ... Potri.004G034900
[exp]
20.49 0.7892
AT1G67630 EMB2814, POLA2 EMBRYO DEFECTIVE 2814, DNA pol... Potri.010G055900
[exp]
32.63 0.7796
Potri.005G106151
[exp]
40.98 0.7440
AT2G22140 ATEME1B essential meiotic endonuclease... Potri.007G077400
[exp]
45.59 0.7052
AT5G11300 CYC2BAT, CYCA2;... CYCLIN A2;2, mitotic-like cycl... Potri.006G247200
[exp]
48.92 0.7363

Potri.013G021200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.