Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27600 1156 / 0 LACS7, ATLACS7 long-chain acyl-CoA synthetase 7 (.1) AT3G05970 1048 / 0 LACS6, ATLACS6 long-chain acyl-CoA synthetase 6 (.1) AT4G23850 473 / 2e-158 LACS4 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) AT1G49430 468 / 1e-156 LRD2, LACS2 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) AT4G11030 467 / 3e-156 AMP-dependent synthetase and ligase family protein (.1) AT1G64400 445 / 7e-148 LACS3 long-chain acyl-CoA synthetase 3, AMP-dependent synthetase and ligase family protein (.1) AT2G47240 436 / 2e-144 CER8, LACS1 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) AT2G04350 365 / 3e-116 LACS8 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) AT1G77590 353 / 8e-112 LACS9 long chain acyl-CoA synthetase 9 (.1) AT3G23790 189 / 5e-51 AAE16 acyl activating enzyme 16, AMP-dependent synthetase and ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G090200 [exp] 1105 / 0 AT3G05970 1078 / 0.0 long-chain acyl-CoA synthetase 6 (.1) Potri.003G139700 [exp] 479 / 7e-161 AT4G23850 1094 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Potri.001G091900 [exp] 469 / 5e-157 AT4G23850 1101 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Potri.009G109900 [exp] 467 / 2e-156 AT1G49430 951 / 0.0 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) Potri.002G192400 [exp] 401 / 1e-130 AT2G47240 950 / 0.0 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) Potri.014G169400 [exp] 358 / 2e-113 AT2G04350 1051 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) Potri.002G084100 [exp] 348 / 4e-110 AT1G77590 1079 / 0.0 long chain acyl-CoA synthetase 9 (.1) Potri.005G177500 [exp] 346 / 2e-109 AT1G77590 1058 / 0.0 long chain acyl-CoA synthetase 9 (.1) Potri.014G169600 [exp] 337 / 4e-107 AT2G04350 866 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029918 [exp] 1199 / 0 AT5G27600 1122 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10004483 [exp] 1194 / 0 AT5G27600 1121 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10002454 [exp] 1075 / 0 AT5G27600 1088 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10010530 [exp] 1063 / 0 AT5G27600 1095 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10021021 [exp] 480 / 2e-161 AT1G49430 955 / 0.0 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) Lus10023832 [exp] 469 / 4e-157 AT1G49430 953 / 0.0 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) Lus10032380 [exp] 469 / 5e-156 AT4G23850 1053 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Lus10001830 [exp] 426 / 8e-141 AT4G11030 910 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10032840 [exp] 416 / 1e-136 AT2G47240 961 / 0.0 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) Lus10023089 [exp] 404 / 7e-131 AT4G23850 959 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [poplar] [flax] ANL PF00501 [poplar] [flax] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Potri.013G021300.2 pacid=42812211 polypeptide=Potri.013G021300.2.p locus=Potri.013G021300 ID=Potri.013G021300.2.v4.1 annot-version=v4.1 ATGGATTCACCGGCTCAACGTCGTCTCAAATCTATCCAGAGTCACATCCTCTCTTCCACCACCGCTGATCAATCCGACCTCCAAGCTAACCTCACCTCCT CCTCACAGTTCGTTCACCGTCAACAGTACAGTGTTTGTTTACCGGAGAAATTGCAAACAGGGAAGTGGAATGTTTATAGATCTGCACGGTCGCCAATGAA GATTGTAACTAGGTTTCATGATCACCCTGAGATCGAGACATTACATGATAACTTTGTACATGCTGTTAAAACTTTTGGAGATTACAAGTACTTGGGCACA CGAGTTCAGGCAGATGGAATGATTGGAGAGTATACATGGATGACATATGGAGAAGCTGGTGCTGCTAGGGAAGCTATAGGTTCTGCCCTTCGTTTTCATG GGTTACAAAAGGGAGCTTGCATTGGACTCTATTTTATAAACAGACCAGAGTGGTTGATTGTGGATCACGCTTGTACAGCATATTCTTATATTTCAGTTCC CTTATATGACACACTTGGTCCTGATGCAGTTAAGTATGTTGTGAATCATGCTGATGTGCAAGCTATCTTCTGTGTCCCAGAGACATTGAACACCCTGCTT AGCTTCATATCCGAGATTCCATCTGTACGACTTATAGTGGTAGTGGGAGGTGTAGATGAACACTTACCATCACTTCCTTTGGCATCTGGAGTGAAGCTCA GATCATATACAAAACTGTTCAGTGAGGGCCGCAGTAGCCTGCAACCTTTTATCCCTCCTAAACCTGAGGATGTTGCCACCATATGCTATACTAGTGGTAC TACTGGCACACCAAAGGGAGTTGTCTTGACACATAACAACTTAATTTCAAGTGTTGCTGGTTTCTGCATGGCAATCAAATTCAACCCTGCAGACATTTAT ATATCTTATCTTCCTTTGGCGCACATATATGAACGGAGTAACCAGATCGTGTCAGTTTACTATGGTGTTGCTGTTGGATTCTACCAGGGAGACAATTTGA AATTGCTGGATGATTTGTCTGCTTTAAGACCAACAATATTGTGTAGTGTTCCTCGGCTGTATAACCGTATATATGATGGAATCATAAATGCGGTGAAAAG TTCTGGGGTTTTAAAGGAGAGGCTATTTAGAGCTGCCTACAACTCTAAGAAGCAAGCGTTGATGAGTGGCCGAAATCCATCACCAATGTGGGACCGATTG GTATTTAACAAAATAAAGGAAAAGCTTGGAGGACGAGTGCGGTTTATGGGATCAGGTGCTTCACCTTTATCTCCAGATGTAATGGACTTTCTGAGGGTGT GTTTTGGCTGTCAAGTACTTGAGGGATATGGGATGACCGAAACTTCTTGTGTCATTAGCAGTGTGGACCAGGGTGACAATTTATCTGGCCATGTTGGGTC GCCTAATCCTGCCTGCGAAATAAAACTGGTGGATGTTCCTGAAATGAATTACACCTCTGAGGATCAGCCTCATCCTCGTGGAGAAATCTGTGTCAGGGGT CCCACTATCTTCCAAGGCTACTACAAAGCTGAAGTCCAAATGAGAGAAGTAATAGATGATGATGGTTGGTTGCATACAGGAGACATTGGGTTGTGGTTAC CCGGAGGCCGCCTCAAGATTATTGACAGGAAGAAGAATATTTTCAAGTTGGCACAGGGTGAGTACATAGCACCGGAGAAGGTTGAGAATGTGTATACAAA ATGCAGATTTGTTTCCCAGTGTTTTATATATGGTGATAGCTTCAACTCCTCATTAGTGGCTGTAGTTGCAGTGGAGCCAGATGTATTGAGAGATTGGGCC GTGTCTGAAGGGATCAAGCATGATGATTTAGGACAGTTATGCAATGATCCAAGAGCAAGGGCCGCAGTTCTTGCTGACATGGATCTGGTTGGAAAGGAAG CACAGTTGAGAGGTTTTGAATTTGCAAAAGCCGTAACTTTGGTGCCTGAACCATTCACCATGGAGAATGGACTTCTCACGCCAACATTTAAGGTCAAGAG GCCTCAAGCGAAGGAATACTTTGCCAAAGCAATATCAAACATGTATGCTGCACTTTCTGCATCGGATCCGAAGCCGCCGAAGTTGTAG
AA sequence Show only first row Show all	>Potri.013G021300.2 pacid=42812211 polypeptide=Potri.013G021300.2.p locus=Potri.013G021300 ID=Potri.013G021300.2.v4.1 annot-version=v4.1 MDSPAQRRLKSIQSHILSSTTADQSDLQANLTSSSQFVHRQQYSVCLPEKLQTGKWNVYRSARSPMKIVTRFHDHPEIETLHDNFVHAVKTFGDYKYLGT RVQADGMIGEYTWMTYGEAGAAREAIGSALRFHGLQKGACIGLYFINRPEWLIVDHACTAYSYISVPLYDTLGPDAVKYVVNHADVQAIFCVPETLNTLL SFISEIPSVRLIVVVGGVDEHLPSLPLASGVKLRSYTKLFSEGRSSLQPFIPPKPEDVATICYTSGTTGTPKGVVLTHNNLISSVAGFCMAIKFNPADIY ISYLPLAHIYERSNQIVSVYYGVAVGFYQGDNLKLLDDLSALRPTILCSVPRLYNRIYDGIINAVKSSGVLKERLFRAAYNSKKQALMSGRNPSPMWDRL VFNKIKEKLGGRVRFMGSGASPLSPDVMDFLRVCFGCQVLEGYGMTETSCVISSVDQGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRG PTIFQGYYKAEVQMREVIDDDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKVENVYTKCRFVSQCFIYGDSFNSSLVAVVAVEPDVLRDWA VSEGIKHDDLGQLCNDPRARAAVLADMDLVGKEAQLRGFEFAKAVTLVPEPFTMENGLLTPTFKVKRPQAKEYFAKAISNMYAALSASDPKPPKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G27600		LACS7, ATLACS7	long-chain acyl-CoA synthetase...		Potri.013G021300 [exp]	0	1
AT4G24230		ACBP3	acyl-CoA-binding domain 3 (.1....		Potri.014G018700 [exp]	2.00	0.8240
AT5G04460			RING/U-box superfamily protein...		Potri.008G030100 [exp]	4.24	0.7940
AT2G37290			Ypt/Rab-GAP domain of gyp1p su...		Potri.006G133400 [exp]	6.78	0.7428
AT5G04040		SDP1	SUGAR-DEPENDENT1, Patatin-like...		Potri.006G043800 [exp]	14.49	0.7682
AT1G28320		DEG15	protease-related (.1)		Potri.004G046900 [exp]	29.84	0.7608
AT1G11330			S-locus lectin protein kinase ...		Potri.004G027666 [exp]	36.49	0.7616
AT3G14270		FAB1B	FORMS APLOID AND BINUCLEATE CE...		Potri.001G163200 [exp]	37.88	0.7322
AT4G17080			Histone H3 K4-specific methylt...		Potri.001G149400 [exp]	39.11	0.6992
AT5G10940		ASG2	ALTERED SEED GERMINATION 2, tr...		Potri.002G103216 [exp]	69.85	0.7298
AT1G06750			P-loop containing nucleoside t...		Potri.005G220000 [exp]	91.86	0.6807

Compare expression of checked genes

Potri.013G021300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.