Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54990 467 / 7e-162 RGR1, AXR4 REDUCED ROOT GRAVITROPISM 1, REDUCED ROOT GRAVITROPISM, AUXIN RESISTANT 4, alpha/beta-Hydrolases superfamily protein (.1) AT1G52510 43 / 0.0003 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G12830 42 / 0.0008 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G175700 [exp] 48 / 1e-05 AT4G12830 545 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004478 [exp] 514 / 3e-180 AT1G54990 461 / 4e-160 REDUCED ROOT GRAVITROPISM 1, REDUCED ROOT GRAVITROPISM, AUXIN RESISTANT 4, alpha/beta-Hydrolases superfamily protein (.1) Lus10029924 [exp] 511 / 4e-179 AT1G54990 465 / 1e-161 REDUCED ROOT GRAVITROPISM 1, REDUCED ROOT GRAVITROPISM, AUXIN RESISTANT 4, alpha/beta-Hydrolases superfamily protein (.1) Lus10002142 [exp] 48 / 1e-05 AT4G12830 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12697 [poplar] [flax] Abhydrolase_6 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.013G021500.1 pacid=42810988 polypeptide=Potri.013G021500.1.p locus=Potri.013G021500 ID=Potri.013G021500.1.v4.1 annot-version=v4.1 ATGGCCATAATCACAGAGGAACCAGAAATACAACCTCAAAATGACCGAGAACCAACAGAGGAACCAACTTCACCTTCTAAAGATCCAAAACGAAAGCCAA AACCAAAGCCAATGACACAAACTAAACCACAAACACAAGCACAGGCACAGACACAGATCAACCCTTTTGTTTTCTGGTTCTATTTCACTGTCTCAGTCTC ACTTGTCACTCTTTTAGCTATTGGTTTGTCCTCTCTCTATTCAAATCCAGACCCCAAAAGTTTCTTCCTTTCCCTCTCCACCCCACTACGCCAACACTAC TCAAAGGGGCGTACAATTAAAGTCCAACTGGCTCAAAACCAGCCATCAAGTGAGGTTTTTGTGTTAGAGAGTGGTAAAAGAGATTTTGTGAGTGAAAAAG TTGTGATTGTTCATGGGTTGGGTCTAAGTTCATTTTCTTTTAGGAAAGTTTTAGACCTTTTGGGTTCAAAAGGGGTTCATGGGGTTGTGTTTGATTTACC TGGAAATGGGTTTTCTGATAAGTTTATGGAAGCTAGTGAAGAGAGAGGAAATGGAGTTTTCGAGAGGTTTAAGGACGCCTATGCACTGATTAAAGAAAAG GGTATTTTTTGGGCTTTTGATAACATGGTTGAAACCGGACAGATTCCGTATGAGGAGATTGTGTCTCATTATAGTGAAAAAAAGAGTGTTGTTAAGCCTA TTGTATTGGGTAGTGAAGAGACGGGCTTGGTTTTAGGCCAAGTGATTGAGACATTGGGGTTAGCTCCTGTGCATTTGGTTTTGCACGATTCGAGTTTAGG AATGGTGGCGAATTGGGTTTTGAAGAATTCAGAATCGATTAGGAGTGTGACTCTGGTTGATACAGGGTTGAGGCCGGCTTTGCCTTTGTGTGTTTTGGAA GTGCCAGTGGTCAGAGAGGTTGTTTTAGGCGTTAATTTTGTGTACGAATGGTTGATTAGAATGTGTTGCTCAAGGGGGATTGGTAGTTTGGATGTGGCGG CACATAGAATGATGTTGAATGGGAGGGATGGGAGGAGAGCTGTTGTGGCTACAGGCAAGAAATTGAATTCAAGTTTTGATATTGCAGAATGGGGTGGTTT GGATGGGGTAAAGGGAATCCCAATGCAGGTTGTTTGGTGTAGTGGTTGGTCAAAAGAATGGAGCGAGGAGGGACGTAAGGTAGCCGATGCGCTTCCACAG GCTAAATTTGTCACACACACTGGTGGGCGCTGGCCTCAGGAAAATGCTGCTGATGAGCTAGCTGAGAATATTGTTAAATTTGTTTCCTCCTTGCCAAAAT CAGTTAGGCGAGTTGAAGAAGAACCTATTCCGGAGCATATACAGAAAATGCTTGACGAGGCAAAGGATGGTCATCACCATCATCACGGCCATGGTGGTCA CGGCCATCATGATGGTCATGGTCATGCTCATGCTCAGACTCATGGAGCTGGTTACATGGATGCATATGGGCTAGGTCATGGATGGGGCAGTTGA
AA sequence Show only first row Show all	>Potri.013G021500.1 pacid=42810988 polypeptide=Potri.013G021500.1.p locus=Potri.013G021500 ID=Potri.013G021500.1.v4.1 annot-version=v4.1 MAIITEEPEIQPQNDREPTEEPTSPSKDPKRKPKPKPMTQTKPQTQAQAQTQINPFVFWFYFTVSVSLVTLLAIGLSSLYSNPDPKSFFLSLSTPLRQHY SKGRTIKVQLAQNQPSSEVFVLESGKRDFVSEKVVIVHGLGLSSFSFRKVLDLLGSKGVHGVVFDLPGNGFSDKFMEASEERGNGVFERFKDAYALIKEK GIFWAFDNMVETGQIPYEEIVSHYSEKKSVVKPIVLGSEETGLVLGQVIETLGLAPVHLVLHDSSLGMVANWVLKNSESIRSVTLVDTGLRPALPLCVLE VPVVREVVLGVNFVYEWLIRMCCSRGIGSLDVAAHRMMLNGRDGRRAVVATGKKLNSSFDIAEWGGLDGVKGIPMQVVWCSGWSKEWSEEGRKVADALPQ AKFVTHTGGRWPQENAADELAENIVKFVSSLPKSVRRVEEEPIPEHIQKMLDEAKDGHHHHHGHGGHGHHDGHGHAHAQTHGAGYMDAYGLGHGWGS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G54990		RGR1, AXR4	REDUCED ROOT GRAVITROPISM 1, R...		Potri.013G021500 [exp]	0	1
AT5G26960			Galactose oxidase/kelch repeat...		Potri.001G271900 [exp]	20.39	0.6184
AT1G18800		NRP2	NAP1-related protein 2 (.1)		Potri.015G062700 [exp]	32.93	0.6166
AT5G66460		MAN7, AtMAN7	endo-beta-mannase 7, Glycosyl ...		Potri.007G022000 [exp]	34.59	0.5793
AT1G11125			unknown protein		Potri.004G037100 [exp]	41.71	0.5739
AT3G18630		ATUNG	uracil dna glycosylase (.1)		Potri.010G169600 [exp]	50.99	0.5793
AT3G49290		ABIL2	ABL interactor-like protein 2 ...		Potri.012G016900 [exp]	53.18	0.5525
AT3G23290		LSH4	LIGHT SENSITIVE HYPOCOTYLS 4, ...		Potri.008G167700 [exp]	64.66	0.5440
AT5G10010			unknown protein		Potri.007G082000 [exp]	68.27	0.5668
AT1G78700	BZR	BEH4	BES1/BZR1 homolog 4 (.1)		Potri.004G062400 [exp]	72.93	0.5745
AT5G54800		ATGPT1, GPT1	ARABIDOPSIS GLUCOSE 6-PHOSPHAT...		Potri.011G135900 [exp]	100.39	0.5492	GPT.1

Compare expression of checked genes

Potri.013G021500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.