Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55000 280 / 2e-94 peptidoglycan-binding LysM domain-containing protein (.1.2.3) AT5G08200 43 / 0.0002 peptidoglycan-binding LysM domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G032100 [exp] 248 / 7e-83 AT1G55000 188 / 3e-61 peptidoglycan-binding LysM domain-containing protein (.1.2.3) Potri.012G036600 [exp] 42 / 0.0004 AT5G23130 275 / 6e-90 Peptidoglycan-binding LysM domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029925 [exp] 296 / 4e-100 AT1G55000 320 / 1e-111 peptidoglycan-binding LysM domain-containing protein (.1.2.3) Lus10004477 [exp] 295 / 9e-100 AT1G55000 327 / 5e-114 peptidoglycan-binding LysM domain-containing protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0187 [poplar] [flax] LysM PF01476 [poplar] [flax] LysM LysM domain CL0271 [poplar] [flax] F-box PF12937 [poplar] [flax] F-box-like F-box-like
Representative CDS sequence Show only first row Show all	>Potri.013G021600.2 pacid=42812150 polypeptide=Potri.013G021600.2.p locus=Potri.013G021600 ID=Potri.013G021600.2.v4.1 annot-version=v4.1 ATGGATGGCACGGACTCCCTTTTCTACTATTACCCTCTTCCCAAAAAGAAGCCCCCGGTTTCTCCCTCTCCCTGCCCAACTGACCATCATATCCCAACCA CCATCACTAACGCCAACACCGACACAACTACAACCAAAACCACCACAGCAACCACCAAAAACGCCACCATCAACAACAACAACAACAACAAAAACTCATT TCCCTTTTACAAACCAATAGAAATTAAAGAGAGAGATTTTCTCTTCAATTACAACCCTTTTCACAAACACAAGGCTGCTCCCACATCTTCCTCTCTCGAT TCACCCCCCACCAATACCAAAACCACCAAGAAAATGGACTCACACGTGCTTCTTGAAGTCTTCACTTGCAGGGATACACTAATTATGATCTTACGAAAGC TTGGAGCTCGAGACTTGGCACGTGCAAGCTGTGTTTGCAAGCTGTGGAGAGATATGGCTTCTGGTGATGAGATTGTGAGGCCTGCTTTTATGGAACCATG GAAGTTGAAGGATATTGTGGGGAAGCCCGTGTCTGGAAGTTTTTGGAGAGATAGTGGGATTTGGAAGTTTGCTATTTCACATAAGATTGTTAAAGGGGAT TCTGTTGCTAGTCTTGCTGTTAAGTATTCTGTTCAGGTCATGGATATAAAACGGATAAATAACATGACGAGTGACCATGGCATAAATTCAAGGGAGAGGT TGTTGATCCCCATAATCAATCCAAACCTTCTCATAAATGAGACATGCTACATAGAGTTGGATATCCATGCGAAAAGAGAAGTGGCAGTATTATATCCAGA AGGCAAGCCTGATGAAAAGCTAATGTCAAAGGGATCATCCTCTGACCATGGCAAAAGAAGGGTTATCGATTCCTTGAAGAGAAGCATGCAAGTTGATGAT GGAACTGCTCAATACTACTGGTCTATTTCAAATGGTGACCCTCGAGCTGCACTCACAGAATTTTCAGCAGACCTTAGGTGGGAGAGGGATGCAGGGCTGG GCTAG
AA sequence Show only first row Show all	>Potri.013G021600.2 pacid=42812150 polypeptide=Potri.013G021600.2.p locus=Potri.013G021600 ID=Potri.013G021600.2.v4.1 annot-version=v4.1 MDGTDSLFYYYPLPKKKPPVSPSPCPTDHHIPTTITNANTDTTTTKTTTATTKNATINNNNNNKNSFPFYKPIEIKERDFLFNYNPFHKHKAAPTSSSLD SPPTNTKTTKKMDSHVLLEVFTCRDTLIMILRKLGARDLARASCVCKLWRDMASGDEIVRPAFMEPWKLKDIVGKPVSGSFWRDSGIWKFAISHKIVKGD SVASLAVKYSVQVMDIKRINNMTSDHGINSRERLLIPIINPNLLINETCYIELDIHAKREVAVLYPEGKPDEKLMSKGSSSDHGKRRVIDSLKRSMQVDD GTAQYYWSISNGDPRAALTEFSADLRWERDAGLG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G55000			peptidoglycan-binding LysM dom...		Potri.013G021600 [exp]	0	1
AT1G09710	MYB		Homeodomain-like superfamily p...		Potri.002G106500 [exp]	2.82	0.9357
AT3G48880			RNI-like superfamily protein (...		Potri.015G139700 [exp]	6.08	0.8681
					Potri.009G001301 [exp]	6.16	0.8927
					Potri.005G009001 [exp]	7.07	0.9217
					Potri.017G152420 [exp]	7.07	0.9039
AT2G38410			ENTH/VHS/GAT family protein (....		Potri.016G131900 [exp]	7.34	0.9046
AT1G43700	bZIP	SUE3, AtbZIP51,...	sulphate utilization efficienc...		Potri.002G069500 [exp]	7.48	0.8952
AT5G07610			F-box family protein (.1)		Potri.013G067800 [exp]	9.05	0.8652
AT1G17130			Family of unknown function (DU...		Potri.011G096100 [exp]	9.21	0.8945
					Potri.001G063309 [exp]	9.79	0.9013

Compare expression of checked genes

Potri.013G021600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.