Plant FIBer expression Database

Potri.013G021700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G14950 545 / 0 KMS1 Killing Me Slowly 1, SNARE associated Golgi protein family (.1.2.3)
AT1G05360 518 / 0 KMS2 Killing Me Slowly 2, unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G032200
[exp]
732 / 0 AT4G14950 543 / 0.0 Killing Me Slowly 1, SNARE associated Golgi protein family (.1.2.3)
Potri.008G151300
[exp]
553 / 0 AT4G14950 610 / 0.0 Killing Me Slowly 1, SNARE associated Golgi protein family (.1.2.3)
Potri.010G089600
[exp]
552 / 0 AT4G14950 617 / 0.0 Killing Me Slowly 1, SNARE associated Golgi protein family (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004916
[exp]
539 / 0 AT4G14950 589 / 0.0 Killing Me Slowly 1, SNARE associated Golgi protein family (.1.2.3)
Lus10010536
[exp]
538 / 0 AT4G14950 589 / 0.0 Killing Me Slowly 1, SNARE associated Golgi protein family (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09335 SNARE_assoc SNARE associated Golgi protein
Representative CDS sequence
>Potri.013G021700.1 pacid=42810805 polypeptide=Potri.013G021700.1.p locus=Potri.013G021700 ID=Potri.013G021700.1.v4.1 annot-version=v4.1
ATGGAGACCCCAAAAACACAGCAACAGTACATCAACGACTTGTCAATTTCTAGAATCAGAGAGAAACAAAGACAGGAATTAGAGAATCTAACACTAGCAA
CACAGCCTATAAAGACCCTGACATATTTTGTATTGGCTATAGTTCAATGTCTCCAGAGATTGTTTGCAAAAAGTGGTTGGCTTTTGCTTCTGATAAGTGC
CTTTATAGGAAGTATTGGGATTCTTGTCATCACCACTGGTAGCCCTTATCAAGAGCATGTCCATGAAGTTGTTAATTATCTTCGATTTGGACTCTGGTGG
TTGGCACTTGGTGTAGCATCATCAATTGGTCTAGGATCTGGTCTGCATACATTTGTTCTGTATTTAGGCCCACATATTGCTCTATTTACAATTAAAGCTG
TACAATGTGGTCGAGTTGATATAAAAAGTTCTGTATATGATACGATTCAACTATACAGCGGTCCTTCATGGCTGGACAGAAACTGCACTGCATTTGGACC
TCCAATGTATTCATCATTAGAAGGCTCGAGAATTCCACTGACCAGCATTTTGCCTCAGATTCAACTTGAGGCTGTTTTGTGGGGGATCGGAACTGCACTT
GGGGAGCTTCCTCCATATTTCATATCAAGAGCTGCTAGCATGTCAGGTAGCAAGCTGGAAGTCATGAAAGAATTCGAGTCTTTTTCAGCAGAAGATCATA
ACACAGTCATGGCCACTCACATGAAACAGATTAAAAACTGGCTCCTTTCACATTCACAGTATCTGAACTTCTTCTCAATTTTAGTCCTTGCTTCGGTGCC
AAATCCTCTTTTTGACCTTGCTGGTATCTTGTGTGGGCAATTTGGAGTTCCATTTTGGAAGTTCTTCCTCGCAACATTGATAGGAAAGGCAATCATCAAA
ACACACATTCAGACAGCTTTCATCATCTCAGTATGCAACCATCAACTCCTTGACTTAATAGAAAATGAGCTGATTCGAATGCTCAGCTTTGTTCCTGGAC
TTGCCACGGTCCTGCCAAAACTCATTGCAAAACTACAAATTATTAGAAACAAGTATATGGCACCAACACCTCCAGTCTCAAACGTTGAGGTGAAGAAATG
GGACTTCTCATTTGCTTCGATATGGAACACTGTCATATGGCTCATGCTCATCAGCTTCTTCTTCAAGATTGTGAGAGAGACTGCCCAGAGCTTTCTGAAG
GAACGGCACGAAAAAGAGCTGACATTGGCCAAATCCTCTTCTGCATCAAGCCCTTCCTCATCCAAAAACACTTGA
AA sequence
>Potri.013G021700.1 pacid=42810805 polypeptide=Potri.013G021700.1.p locus=Potri.013G021700 ID=Potri.013G021700.1.v4.1 annot-version=v4.1
METPKTQQQYINDLSISRIREKQRQELENLTLATQPIKTLTYFVLAIVQCLQRLFAKSGWLLLLISAFIGSIGILVITTGSPYQEHVHEVVNYLRFGLWW
LALGVASSIGLGSGLHTFVLYLGPHIALFTIKAVQCGRVDIKSSVYDTIQLYSGPSWLDRNCTAFGPPMYSSLEGSRIPLTSILPQIQLEAVLWGIGTAL
GELPPYFISRAASMSGSKLEVMKEFESFSAEDHNTVMATHMKQIKNWLLSHSQYLNFFSILVLASVPNPLFDLAGILCGQFGVPFWKFFLATLIGKAIIK
THIQTAFIISVCNHQLLDLIENELIRMLSFVPGLATVLPKLIAKLQIIRNKYMAPTPPVSNVEVKKWDFSFASIWNTVIWLMLISFFFKIVRETAQSFLK
ERHEKELTLAKSSSASSPSSSKNT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G14950 KMS1 Killing Me Slowly 1, SNARE ass... Potri.013G021700
[exp]
0 1
AT1G31360 MED34, ATRECQ2,... ARABIDOPSIS THALIANA RECQ 2, ... Potri.013G161200
[exp]
2.00 0.6760
AT3G24590 PLSP1 plastidic type i signal peptid... Potri.002G079600
[exp]
2.44 0.6755
AT4G00570 NAD-ME2 NAD-dependent malic enzyme 2 (... Potri.014G079900
[exp]
9.00 0.6325
AT2G42490 Copper amine oxidase family pr... Potri.010G045600
[exp]
10.39 0.6512
AT1G70670 AtCLO4 Arabidopsis thaliana caleosin ... Potri.010G107900
[exp]
12.12 0.6606 Pt-CABP1.2
AT3G63530 BB2, BB BIG BROTHER, RING/U-box superf... Potri.001G019600
[exp]
18.70 0.6506
AT2G32940 AGO6 ARGONAUTE 6, Argonaute family ... Potri.014G159400
[exp]
21.79 0.6513 AGO902
AT3G02850 SKOR STELAR K+ outward rectifier, S... Potri.012G043000
[exp]
23.74 0.6518 Pt-SKOR.2
AT4G03270 CYCD6;1 Cyclin D6;1 (.1) Potri.011G040900
[exp]
24.73 0.5767
AT2G20300 ALE2 Abnormal Leaf Shape 2, Protein... Potri.014G194300
[exp]
24.81 0.5716

Potri.013G021700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.