Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55810 337 / 2e-118 ATNMNAT nicotinate/nicotinamide mononucleotide adenyltransferase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G032300 [exp] 452 / 1e-163 AT5G55810 337 / 4e-118 nicotinate/nicotinamide mononucleotide adenyltransferase (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023862 [exp] 347 / 4e-122 AT5G55810 336 / 5e-118 nicotinate/nicotinamide mononucleotide adenyltransferase (.1.2) Lus10014366 [exp] 100 / 6e-24 AT4G33940 189 / 2e-57 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [poplar] [flax] HUP PF01467 [poplar] [flax] CTP_transf_like Cytidylyltransferase-like
Representative CDS sequence Show only first row Show all	>Potri.013G021900.2 pacid=42812629 polypeptide=Potri.013G021900.2.p locus=Potri.013G021900 ID=Potri.013G021900.2.v4.1 annot-version=v4.1 ATGCTTGTTTGCCACTGTCATTCAGATATCATGGATCCTCAATTGCCAATGGAAAAGGTATCTTTTGGCTTAAATTCTACTGAGGAAAATAACAAGATAA ATGTAGTTCTTGTGGCAACTGGCAGTTTCAATCCTCCAACTTTTATGCACCTGCGATTGTTTGAGCTGGCAAGGGATGCATTGCAATCAGAGGGATACCA TGTCATTGCAGCCTACATGTCACCTGTCAATGATGCATACAAGAAAGCAGGCCTCATTTCTGGGGAACATAGGTTGCAGATGTGCAGCTTAGCCTGTGAA ACTTCTGATTTCGTAATGGTTGATCAATGGGAGGTAAACCAAAGCACTTACCAACGTACTTTGACTATTTTGCAAAGAGTCGAGAGTTCATTTACTAATG GTATGAAAATGTCCAGAGAATCCCTTAAAGTCATGCTTGTTTGTGGTTCTGATTTACTCCAGTCCTTTAGTATTCCTGGTTTTTGGAACCGTGATCATGT AAGAACCATATGCAGCAACTATGGTGTGGTTTGCATTCGCAGAGAAGGGCAAGATATTAAGAAGATTGTATCTGATGATGAAATTTTGAATGAAAACAAG GGTAATGTCAAAGTTACAGATGATCTTGTACCAAACCAGATCAGTTCAACGCGAGTGAGGGAATGCATTTCAAGAGGGTTGTCCATAAAGTACTTAACTG CAGATGGAGTGATTGATTACATTAGAGAAAAAGGTTTGTACCTGAACTAA
AA sequence Show only first row Show all	>Potri.013G021900.2 pacid=42812629 polypeptide=Potri.013G021900.2.p locus=Potri.013G021900 ID=Potri.013G021900.2.v4.1 annot-version=v4.1 MLVCHCHSDIMDPQLPMEKVSFGLNSTEENNKINVVLVATGSFNPPTFMHLRLFELARDALQSEGYHVIAAYMSPVNDAYKKAGLISGEHRLQMCSLACE TSDFVMVDQWEVNQSTYQRTLTILQRVESSFTNGMKMSRESLKVMLVCGSDLLQSFSIPGFWNRDHVRTICSNYGVVCIRREGQDIKKIVSDDEILNENK GNVKVTDDLVPNQISSTRVRECISRGLSIKYLTADGVIDYIREKGLYLN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G55810		ATNMNAT	nicotinate/nicotinamide mononu...		Potri.013G021900 [exp]	0	1
AT5G01340		AtmSFC1	mitochondrial succinate-fumara...		Potri.016G119650 [exp]	3.31	0.9331
AT2G27140			HSP20-like chaperones superfam...		Potri.004G191000 [exp]	3.74	0.9590
AT1G58070			unknown protein		Potri.003G009400 [exp]	4.24	0.9349
					Potri.001G355650 [exp]	6.32	0.9353
AT2G03350			Protein of unknown function, D...		Potri.010G162400 [exp]	7.21	0.9272
AT1G32310			unknown protein		Potri.001G138700 [exp]	8.30	0.9120
					Potri.001G178600 [exp]	9.27	0.8865
AT2G01300			unknown protein		Potri.004G093100 [exp]	11.18	0.8272
AT5G02040		PRA1.A1	prenylated RAB acceptor 1.A1 (...		Potri.006G091300 [exp]	11.18	0.9077
					Potri.006G273732 [exp]	13.78	0.9338

Compare expression of checked genes

Potri.013G021900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.