Potri.013G022200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G67500 1427 / 0 ATREV3 recovery protein 3 (.1.2)
AT5G63960 291 / 6e-81 EMB2780 DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases (.1.2)
AT5G67100 114 / 4e-25 ICU2 INCURVATA2, DNA-directed DNA polymerases (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G065800 311 / 2e-87 AT5G63960 1817 / 0.0 DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases (.1.2)
Potri.007G045300 97 / 1e-19 AT5G67100 1734 / 0.0 INCURVATA2, DNA-directed DNA polymerases (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10029911 2172 / 0 AT1G67500 1431 / 0.0 recovery protein 3 (.1.2)
Lus10033513 309 / 1e-86 AT5G63960 1785 / 0.0 DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases (.1.2)
Lus10020862 228 / 1e-60 AT5G63960 1218 / 0.0 DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases (.1.2)
Lus10004489 161 / 1e-39 AT3G05380 558 / 0.0 ARABIDOPSIS THALIANA ALWAYS EARLY 2, ALWAYS EARLY 2, DIRP ;Myb-like DNA-binding domain (.1.2.3.4.5)
Lus10019338 98 / 6e-20 AT5G67100 1751 / 0.0 INCURVATA2, DNA-directed DNA polymerases (.1)
Lus10009366 96 / 3e-19 AT5G67100 1807 / 0.0 INCURVATA2, DNA-directed DNA polymerases (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0194 DNA_pol_B-like PF00136 DNA_pol_B DNA polymerase family B
CL0219 RNase_H PF03104 DNA_pol_B_exo1 DNA polymerase family B, exonuclease domain
CL0219 PF14260 zf-C4pol C4-type zinc-finger of DNA polymerase delta
Representative CDS sequence
>Potri.013G022200.2 pacid=42812561 polypeptide=Potri.013G022200.2.p locus=Potri.013G022200 ID=Potri.013G022200.2.v4.1 annot-version=v4.1
ATGGCAGATTCACAGCCTGCGGATTCTTCAAAAATCTTCAGCCTTCGAATCGTATCGATCGATCACTACATGTCGCCTCCGATTCCTGGCGTCGATATTT
GTTACAGTAGCTTTCAAGGCGGAAAAGTGAATGAAGTTCCAGTAATTAGGGTTTATGGCTCTACACCTGCTGGTCAGAAGACTTGTTTGCATGTTCATCG
CGCTTTTCCATATTTATATGTACCATGTTTGGATATTCCGATTAATGGAAATCGGGAAGGAGATGCTTACACACATGCTATTTCGCTTGCTCTTGAGAAA
GCATTGAAGCTTAAAGGAAATGTGGGTTCGAAAAGACAGCATGTGCATGGCTGTAGTCTTGTGAGAGCAAAGAAGTTTTATGGTTACCATTCAGATGAGG
AGTTGTTTGTCAAGATATACCTATATTATCCACATGATGTCTCTCGTGCTGCTAACCTTCTTCTGTCAGGTGCAGTTTTTGATAAAAGCTTGCAGCCTCA
TGAATCTCATATTCCTTTCATTCTCCAGTTTCTGGTTGACTATAACTTGTATGGAATGGGTCATTTACATTTATCGAAGATGAAGTTCCGTAATCCAGTA
CCGGATTCTTTTACCCCAAGAAAATTTAGTAACCAACGTCAAGATGGACCAGAGATGGATGAATCAACTTGCATTTCTGCTGATTTTCAGGCAGATTCAA
GTAGTGGTCAGTGTTTGGTTTCCCCAGTTTGGATCTCATCTACTATTCCTAGCAGTTGGATGTGGCAATTTTCCAGTGAATTCGATGTTTCATCAGACCA
AGACATGCAACGTTGTAAACGTCAAAGCGTTTGTAACCTTGAGGGAGATGCCACCATTGATGATATTCTTAATCAGCAAAGTAAAATGTATACATCCCTC
TCACAAGCACGTTCAGATGTGAAAATGGTGCAATCACTTATACCCATTTGGGAGGAAGAGCATGAAAGGACTGGCATTAATGAGGTTACCATTCTGCCTG
ATCCAGGAAAACCACTTCCAGGGGATGTTTTGAAAACTCTGTTACATGCTCTTGAATTTGAGAGAAAACTTTCTGAATTGTGTATCAAGACAGAAGGCGA
TTTACCTTTGAGTGAAAGTAAAATAAATGTTTTGCCGACAGTGACTTTTACAACTGATGGAGAAAATTTGGCTGAACATGAAAATGTCAATTCTGATAAT
GCCAACGAAGAATTTTTAAAGTGCTCTGCAGAACAAGACACTATTCAATCTTCAGCACAAGGTTCTGTATGTGAAGAGACGGATGCAACACCCACGGAAA
TGAAGGATTTGTGTTTGAAACTATCATCTGAAATAATTGGAACAGTGGATCCAAAGGTTGCAGATGAAGAAGCCTTGGGCCTTTTAAGGTGGCTTGCCAC
TTCCCAGGCTGCTGAAGATATAAACTCTGATGATGAACTTATTTGTGACACAATTCTGAGTCCCCTTTTACCTGCAGCGACCATTGATAAAGTTCTGGAG
AAAGCTAATATAGATTATGAGAGTGAGTCTCAAAAAGAGTGTCAGGATATTCTTGATTCAATTGAGGATTTAGTTAACTTCGAGGTTTTTAAGGAGAAAG
CTTCTCATTCTGTTGATCATAGTCCTCAAACTTCATTAGAGAAAAAAGTTCTCCAGTCTGATACTTTGCGCTCATCTCCTTATGGATCAGCTGGAAGTTC
ATTTAAGGTGGAGTCGAAAAGTGAATGTAAAGGGTATTCACAGGATCAGATATTACCGACTACTGACAGCTGCATCAGTAATAAGCAGAAAAGGAATAGG
TCATTGTGGTGCTCTTTACCTTTTTCTATAAACCAAAAGGCGAATGATGACCCAGAAGTTGCCAGGTCCAAAGTTGTTGATCTTCATGTTGATGAAAGTA
AAAACTATGCTGGAACAGTTATGACTGGAAATGAAGAGGCAAAATGCTCTGATGCCTTAGTAAATGCAGATAAAAATGCTTGTGAAGCAAGTGTTTTGGT
TGGATGTTCAGTGCGTGATATGATGAGAAGAAAACGGTCCCGCCGAACTGCTCAACATGGTGATGGATCTGTTCGGGTTAAAAATGTTCATTTGGGAGGA
GAACAGGATGAATCCAATACTCTCTTTCCAAAACAATTGGATTTACATATACTACCTAATGATGAGAATGATAAAAGAGTTTATGGACCTCTGGACTTTA
GGCCATCAGTTAACAACCAACAAACAGAGTTTTTGGAGACATGTGCCCCTAAAGCCATACCCCATGCATCCAGCAGTGCTAGCTCAATGCAAGTTGTTAC
AAATCCTCTCTCAGCGGACACAAGGAGAGAAGAATTGCAATGCACTTTCACTCCCCCGAAGCAAGATGCTGTGGTTTCTATGGTTGGCTGTGAAATTAAC
AAAGGCAAAGAGTTTGATTTTGGAGGTGTAACCTCTATAGAACCCATAACCTCTACTGTCAGTTCCAAGTTTGATTCCTTACCTGATAATTACTTGTCTA
AGCATATACTTTTGGCTGATAAGAGATTAGAGAGAACTGAAGCTGCTGGTTCAAACTGCTCACCAGCTTTGCCTATTGATCATGATATGTTTGCAAGAGA
TAGTTATAAGCCCAAATATGTTCATCAAGGCAGAATTTCCTTGCAGAATTTATATGACATACCAACTACGCATCTCATTGGCATGGGAATGTCAGTTGAC
ACTGGTCTGCAGAGTGAGAACTGTGCTGCAAACCAGGAAGGAGATTCTGGTCTATCTATACTTGGAAGCTCAGCACCCGAGGCTTTCAAAATGGGAGGAG
AAACCATAGACCTACTTGGGATGACCTTTTGCAAGAAGCCCCCCACTGCAGAATGGAAAGATGGAGCATCTGAAAATGTTTCATTTTCACCTGCTCCATC
ATTTCTTCCCTCTTCTGCAAATGTGGAAAACAAAGACAGGACATCAGGTTGCATTTTCAATTTCCTTGGTGAACATCTCCCTTTTTTTGATGGAGATTAT
CATGATAAGAAAGGAGTGGAAATCAAGTCCTCTTCAAACATTGATTTCAATGCTCCACAAGAAGCTATCATTGGTGTCCCAACTCACTATCTTAACGATG
GTTCGGTCCTGTACCTTTTGACACATGTGTTTTCACCCCCCTCTGTAGATAGTGTCCATAGATGGTTATTGTGTGATGATAAAGATGCTTTGAGAGAACT
CAATGCAGTGTCAGCAGAGCCTTTACTTATGAAAGGATCTTCTGAGATTGGTTCACAAAGCTCGTTACCCATTCATTGCGATAAGGTTTTAACTGAACCA
ACTCCTGTGGCTCATTTGATGCCTATCTTGAATCAAGCACCACAAGCAACAAATATGAATGATAATGCAGAATCTCACCTTTCTAGTGATGAGGCTCAAA
GAAAATTGCAGAGTGAAGGAAATATCATGAAACTCAATCCATGCACCAATTGCCCCATGGATATCTCTCAAATTTCAGGCCCAGATAGGACATCAAGGCT
CACTCCACTTAGTCAAATTGGGTTTCGGGATTCTGCCAGTGTTGGTGCCGGGCAACAACTGACATCATTAAGTATAGAGGTTCAAGCAGAATCTAGAGGA
GATCTCCGACCAAATCCTCGGTTTGATGCCATCAATGTCGTGGTTCTTGCGTTTCAGAATGATGGTGACTCTGCTGTTGAAGTTCATGTGCTTTTATGTA
GTAAAAGTGAATCTTGCCAAAGGAGTTATGATGGAACATCTGGGTGTAGTGTGCTTGTTTTCTCTGAGGAGAAGCACTTGTTTAGTCATTTTATGGCGAT
TATTGTTTCATTTGATCCAGATATTTTAATGGGTTGGGATGTACAAGGTGGTTCTCTTGGTTTTTTGGCTGAGAGGGCTGCACATCTTGGTATAGGCCTA
CTTAATAATATCTCTCGGACACCATCGGAAGCCAACATAGATGTTGGAGAAAGAGAAAATTCAGGAAAGGTAATACTAGATACTATGCTTAAAGAGTCAT
TAATTACTGATTCTGCACTTGTAGAAGATACAGTAATTGAGGATGAATGGGGCCGAACTCATGCCAGTGGTGTCCATGTCGGTGGTAGAGTTGTCCTCAA
TGTATGGCGACTGATGCGTGGTGAAGTAAAGCTTAACATGTATACTGTTGAAGCTGTTGGTGAAGCTCTTTTGAGGCGAAAAATACCATCAATTCCTTAC
AAAGTGTTGACAAAATGGTTTGCAAGTGGTCCTGGACGAGCCAGATATAGATGCATTGAATATATGATAGATAGAGCAAAATTGAACCTTGAGATAATGA
ATCAACTTGACATGATAAATCGAACATCAGAACTTGCTCGTGTATTTGGCATTGACTTCTTTTCTGTTCTTTCTCGAGGTTCACAGTATCGTGTTGAATC
TATGTTTCTGAGATTGGCACATACACAAAACTATCTTGCCATTTCTCCTGGGAATCAACAGGTGGCTTCTCAACCTGCAATGGAGTGTTTACCTCTGGTG
ATGGAGCCAGAATCTGGTTTTTATGCAGATCCAGTTGTTGTCTTGGATTTTCAGTCTCTTTATCCATCGATGATAATCGCATACAACCTTTGCTTTTGTA
CGTGTCTTGGAAATGTTGCACCTTCAAAGGCAAATACACTGGGGGTTAGTTCATTTTCAACAGATCCAAGTGTTTTGCGAGATTTGAAAGATAAAATACT
GCTTACTCCAAATGGCACTATGTATGTGCCTTCAGAGATTCGAAAAGGTGTTCTGCCCCGTTTATTAGAGGAAATATTGTCAACTCGAATAATGCTGAAA
CAAGCAATGAAGAAGTTGGCTCCCTCACAACAAGTTCTTCACAGGATATTTAATGCAAGACAGCTTGCTTTGAAGCTGATCGCAAATGTAACCTATGGCT
ATACAGCTGCTGGATTTAGTGGTCGCATGCCTTGTGCAGAGCTTGCTGACAGTATTGTTCAGTGTGGCCGAAGCACACTGGAAAAGGCTATTTCTTTGGT
AAATGCAAATGAAAAGTGGAAGGCTAAAGTGATATATGGTGATACTGATAGCATGTTTGTCCTCCTCAAGGGACGCAGTGTCAAAGAATCTTTTCAAATT
GGACGTGAAATAGCATCAGCTGTAACTGCAATTAACCCAGATCCAGTTACTCTCAAATTGGAGAAAGTCTATCATCCATGCTTCCTCCTTACTAAGAAAC
GCTATGTTGGTTACAGTTATGAGAGTGCTGATCAGATTGAACCTATGTTTGATGCTAAAGGTATCGAGACAGTTCGCAGAGATACTTGTGGTGCTGTTGC
CAAGATAATGGAGCAGTCGCTGAGAATCTTTTTTGAACATGAAGACATCTCTGAGGTTAAAACATATTTGCAGCGTCAATGGACACGGATTCTATCTGGA
AGAGTGTCTCTTCAAGATTTTGTTTTTGCAAAGGAAGTTCGGTTGGGTACCTACAGTACAAGGGCTTCTGCAGCACTCCCACCAGCAGCAATTGTAGCTA
CAAAAGCAATGAGAACTGATCCCCGGGCAGAGCCATGCTATGCAGAGCGAGTGCCTTATGTTGTGATCCACGGGGAGCCAGGCGCTCGACTAGTGGATAT
GGTTGTTGATCCATTGGACCTCTTGGCCATTGATTCCCCTTTCAGATTAAATGATGTATATTACATCACCAAGCAGATAATCCCAGCTTTGCAGCGGGTT
TTTGGACTTCTTGGTGCTGACTTAAACCAGTGGTTTTCAGAGATGCCCCGACCAGCCCGGGAAGCTCTTTCTAAGCACCCTTCATATGCTCCAAATCCTC
AAAGAACCAGAATAGACTATTATTATCTTTCAAAACACTGTGTCCTTTGTGGTGAGTTGGTCCAAGCATCAGCACATATATGCAACAAGTGTTCACAGAG
GGAAATTGCTGCTGCAACAGCTGTGATTGGAAGGACTTCCAAATTGGAGAAGGAGATGCAACACCTTGCTGCTATATGTCGACATTGTGGAGGTGGGGAC
TGGCTTTTGGAGAGCGGGATCAAGTGCACCTCACTCGCATGCTCAGTGTTCTACGAGAGGCGTAAAGTTCAGAGAGAACTACAGGGTCTCTCTGCTGTTG
CTGGAGATGTAGGTTTGTACCCTAAGTGTATGGTTGAATGGTTTTGA
AA sequence
>Potri.013G022200.2 pacid=42812561 polypeptide=Potri.013G022200.2.p locus=Potri.013G022200 ID=Potri.013G022200.2.v4.1 annot-version=v4.1
MADSQPADSSKIFSLRIVSIDHYMSPPIPGVDICYSSFQGGKVNEVPVIRVYGSTPAGQKTCLHVHRAFPYLYVPCLDIPINGNREGDAYTHAISLALEK
ALKLKGNVGSKRQHVHGCSLVRAKKFYGYHSDEELFVKIYLYYPHDVSRAANLLLSGAVFDKSLQPHESHIPFILQFLVDYNLYGMGHLHLSKMKFRNPV
PDSFTPRKFSNQRQDGPEMDESTCISADFQADSSSGQCLVSPVWISSTIPSSWMWQFSSEFDVSSDQDMQRCKRQSVCNLEGDATIDDILNQQSKMYTSL
SQARSDVKMVQSLIPIWEEEHERTGINEVTILPDPGKPLPGDVLKTLLHALEFERKLSELCIKTEGDLPLSESKINVLPTVTFTTDGENLAEHENVNSDN
ANEEFLKCSAEQDTIQSSAQGSVCEETDATPTEMKDLCLKLSSEIIGTVDPKVADEEALGLLRWLATSQAAEDINSDDELICDTILSPLLPAATIDKVLE
KANIDYESESQKECQDILDSIEDLVNFEVFKEKASHSVDHSPQTSLEKKVLQSDTLRSSPYGSAGSSFKVESKSECKGYSQDQILPTTDSCISNKQKRNR
SLWCSLPFSINQKANDDPEVARSKVVDLHVDESKNYAGTVMTGNEEAKCSDALVNADKNACEASVLVGCSVRDMMRRKRSRRTAQHGDGSVRVKNVHLGG
EQDESNTLFPKQLDLHILPNDENDKRVYGPLDFRPSVNNQQTEFLETCAPKAIPHASSSASSMQVVTNPLSADTRREELQCTFTPPKQDAVVSMVGCEIN
KGKEFDFGGVTSIEPITSTVSSKFDSLPDNYLSKHILLADKRLERTEAAGSNCSPALPIDHDMFARDSYKPKYVHQGRISLQNLYDIPTTHLIGMGMSVD
TGLQSENCAANQEGDSGLSILGSSAPEAFKMGGETIDLLGMTFCKKPPTAEWKDGASENVSFSPAPSFLPSSANVENKDRTSGCIFNFLGEHLPFFDGDY
HDKKGVEIKSSSNIDFNAPQEAIIGVPTHYLNDGSVLYLLTHVFSPPSVDSVHRWLLCDDKDALRELNAVSAEPLLMKGSSEIGSQSSLPIHCDKVLTEP
TPVAHLMPILNQAPQATNMNDNAESHLSSDEAQRKLQSEGNIMKLNPCTNCPMDISQISGPDRTSRLTPLSQIGFRDSASVGAGQQLTSLSIEVQAESRG
DLRPNPRFDAINVVVLAFQNDGDSAVEVHVLLCSKSESCQRSYDGTSGCSVLVFSEEKHLFSHFMAIIVSFDPDILMGWDVQGGSLGFLAERAAHLGIGL
LNNISRTPSEANIDVGERENSGKVILDTMLKESLITDSALVEDTVIEDEWGRTHASGVHVGGRVVLNVWRLMRGEVKLNMYTVEAVGEALLRRKIPSIPY
KVLTKWFASGPGRARYRCIEYMIDRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMFLRLAHTQNYLAISPGNQQVASQPAMECLPLV
MEPESGFYADPVVVLDFQSLYPSMIIAYNLCFCTCLGNVAPSKANTLGVSSFSTDPSVLRDLKDKILLTPNGTMYVPSEIRKGVLPRLLEEILSTRIMLK
QAMKKLAPSQQVLHRIFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAISLVNANEKWKAKVIYGDTDSMFVLLKGRSVKESFQI
GREIASAVTAINPDPVTLKLEKVYHPCFLLTKKRYVGYSYESADQIEPMFDAKGIETVRRDTCGAVAKIMEQSLRIFFEHEDISEVKTYLQRQWTRILSG
RVSLQDFVFAKEVRLGTYSTRASAALPPAAIVATKAMRTDPRAEPCYAERVPYVVIHGEPGARLVDMVVDPLDLLAIDSPFRLNDVYYITKQIIPALQRV
FGLLGADLNQWFSEMPRPAREALSKHPSYAPNPQRTRIDYYYLSKHCVLCGELVQASAHICNKCSQREIAAATAVIGRTSKLEKEMQHLAAICRHCGGGD
WLLESGIKCTSLACSVFYERRKVQRELQGLSAVAGDVGLYPKCMVEWF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G67500 ATREV3 recovery protein 3 (.1.2) Potri.013G022200 0 1
AT1G58060 RNA helicase family protein (.... Potri.004G222900 1.00 0.8245
AT1G68580 agenet domain-containing prote... Potri.008G119400 3.87 0.7599
AT1G65580 FRA3 FRAGILE FIBER3, Endonuclease/e... Potri.010G177400 5.29 0.7850
AT1G55350 EMB80, ATDEK1, ... EMBRYO DEFECTIVE 80, embryo de... Potri.003G221100 7.34 0.8143
AT3G21480 BRCT domain-containing DNA rep... Potri.010G014700 9.21 0.7918
AT1G54490 ATXRN4, XRN4, E... ETHYLENE INSENSITIVE 5, ACC IN... Potri.013G035600 10.39 0.7718 XRN4.2
Potri.009G005300 15.09 0.7860
AT1G55860 UPL1 ubiquitin-protein ligase 1 (.1... Potri.001G368600 15.49 0.7993
AT2G47410 WD40/YVTN repeat-like-containi... Potri.014G121100 16.49 0.7840
AT3G61690 nucleotidyltransferases (.1) Potri.014G097600 17.60 0.7737

Potri.013G022200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.