Potri.013G022200 [POPLAR]

| External link |
|
|||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Symbol | ||||||||||||||||||||||||||||||||||||
|
Arabidopsis homologues
|
| |||||||||||||||||||||||||||||||||||
|
Paralogs
|
|
|||||||||||||||||||||||||||||||||||
|
Flax homologues |
|
|||||||||||||||||||||||||||||||||||
| PFAM info |
| |||||||||||||||||||||||||||||||||||
|
Representative CDS sequence |
>Potri.013G022200.2 pacid=42812561 polypeptide=Potri.013G022200.2.p locus=Potri.013G022200 ID=Potri.013G022200.2.v4.1 annot-version=v4.1
ATGGCAGATTCACAGCCTGCGGATTCTTCAAAAATCTTCAGCCTTCGAATCGTATCGATCGATCACTACATGTCGCCTCCGATTCCTGGCGTCGATATTT
GTTACAGTAGCTTTCAAGGCGGAAAAGTGAATGAAGTTCCAGTAATTAGGGTTTATGGCTCTACACCTGCTGGTCAGAAGACTTGTTTGCATGTTCATCG
CGCTTTTCCATATTTATATGTACCATGTTTGGATATTCCGATTAATGGAAATCGGGAAGGAGATGCTTACACACATGCTATTTCGCTTGCTCTTGAGAAA
GCATTGAAGCTTAAAGGAAATGTGGGTTCGAAAAGACAGCATGTGCATGGCTGTAGTCTTGTGAGAGCAAAGAAGTTTTATGGTTACCATTCAGATGAGG
AGTTGTTTGTCAAGATATACCTATATTATCCACATGATGTCTCTCGTGCTGCTAACCTTCTTCTGTCAGGTGCAGTTTTTGATAAAAGCTTGCAGCCTCA
TGAATCTCATATTCCTTTCATTCTCCAGTTTCTGGTTGACTATAACTTGTATGGAATGGGTCATTTACATTTATCGAAGATGAAGTTCCGTAATCCAGTA
CCGGATTCTTTTACCCCAAGAAAATTTAGTAACCAACGTCAAGATGGACCAGAGATGGATGAATCAACTTGCATTTCTGCTGATTTTCAGGCAGATTCAA
GTAGTGGTCAGTGTTTGGTTTCCCCAGTTTGGATCTCATCTACTATTCCTAGCAGTTGGATGTGGCAATTTTCCAGTGAATTCGATGTTTCATCAGACCA
AGACATGCAACGTTGTAAACGTCAAAGCGTTTGTAACCTTGAGGGAGATGCCACCATTGATGATATTCTTAATCAGCAAAGTAAAATGTATACATCCCTC
TCACAAGCACGTTCAGATGTGAAAATGGTGCAATCACTTATACCCATTTGGGAGGAAGAGCATGAAAGGACTGGCATTAATGAGGTTACCATTCTGCCTG
ATCCAGGAAAACCACTTCCAGGGGATGTTTTGAAAACTCTGTTACATGCTCTTGAATTTGAGAGAAAACTTTCTGAATTGTGTATCAAGACAGAAGGCGA
TTTACCTTTGAGTGAAAGTAAAATAAATGTTTTGCCGACAGTGACTTTTACAACTGATGGAGAAAATTTGGCTGAACATGAAAATGTCAATTCTGATAAT
GCCAACGAAGAATTTTTAAAGTGCTCTGCAGAACAAGACACTATTCAATCTTCAGCACAAGGTTCTGTATGTGAAGAGACGGATGCAACACCCACGGAAA
TGAAGGATTTGTGTTTGAAACTATCATCTGAAATAATTGGAACAGTGGATCCAAAGGTTGCAGATGAAGAAGCCTTGGGCCTTTTAAGGTGGCTTGCCAC
TTCCCAGGCTGCTGAAGATATAAACTCTGATGATGAACTTATTTGTGACACAATTCTGAGTCCCCTTTTACCTGCAGCGACCATTGATAAAGTTCTGGAG
AAAGCTAATATAGATTATGAGAGTGAGTCTCAAAAAGAGTGTCAGGATATTCTTGATTCAATTGAGGATTTAGTTAACTTCGAGGTTTTTAAGGAGAAAG
CTTCTCATTCTGTTGATCATAGTCCTCAAACTTCATTAGAGAAAAAAGTTCTCCAGTCTGATACTTTGCGCTCATCTCCTTATGGATCAGCTGGAAGTTC
ATTTAAGGTGGAGTCGAAAAGTGAATGTAAAGGGTATTCACAGGATCAGATATTACCGACTACTGACAGCTGCATCAGTAATAAGCAGAAAAGGAATAGG
TCATTGTGGTGCTCTTTACCTTTTTCTATAAACCAAAAGGCGAATGATGACCCAGAAGTTGCCAGGTCCAAAGTTGTTGATCTTCATGTTGATGAAAGTA
AAAACTATGCTGGAACAGTTATGACTGGAAATGAAGAGGCAAAATGCTCTGATGCCTTAGTAAATGCAGATAAAAATGCTTGTGAAGCAAGTGTTTTGGT
TGGATGTTCAGTGCGTGATATGATGAGAAGAAAACGGTCCCGCCGAACTGCTCAACATGGTGATGGATCTGTTCGGGTTAAAAATGTTCATTTGGGAGGA
GAACAGGATGAATCCAATACTCTCTTTCCAAAACAATTGGATTTACATATACTACCTAATGATGAGAATGATAAAAGAGTTTATGGACCTCTGGACTTTA
GGCCATCAGTTAACAACCAACAAACAGAGTTTTTGGAGACATGTGCCCCTAAAGCCATACCCCATGCATCCAGCAGTGCTAGCTCAATGCAAGTTGTTAC
AAATCCTCTCTCAGCGGACACAAGGAGAGAAGAATTGCAATGCACTTTCACTCCCCCGAAGCAAGATGCTGTGGTTTCTATGGTTGGCTGTGAAATTAAC
AAAGGCAAAGAGTTTGATTTTGGAGGTGTAACCTCTATAGAACCCATAACCTCTACTGTCAGTTCCAAGTTTGATTCCTTACCTGATAATTACTTGTCTA
AGCATATACTTTTGGCTGATAAGAGATTAGAGAGAACTGAAGCTGCTGGTTCAAACTGCTCACCAGCTTTGCCTATTGATCATGATATGTTTGCAAGAGA
TAGTTATAAGCCCAAATATGTTCATCAAGGCAGAATTTCCTTGCAGAATTTATATGACATACCAACTACGCATCTCATTGGCATGGGAATGTCAGTTGAC
ACTGGTCTGCAGAGTGAGAACTGTGCTGCAAACCAGGAAGGAGATTCTGGTCTATCTATACTTGGAAGCTCAGCACCCGAGGCTTTCAAAATGGGAGGAG
AAACCATAGACCTACTTGGGATGACCTTTTGCAAGAAGCCCCCCACTGCAGAATGGAAAGATGGAGCATCTGAAAATGTTTCATTTTCACCTGCTCCATC
ATTTCTTCCCTCTTCTGCAAATGTGGAAAACAAAGACAGGACATCAGGTTGCATTTTCAATTTCCTTGGTGAACATCTCCCTTTTTTTGATGGAGATTAT
CATGATAAGAAAGGAGTGGAAATCAAGTCCTCTTCAAACATTGATTTCAATGCTCCACAAGAAGCTATCATTGGTGTCCCAACTCACTATCTTAACGATG
GTTCGGTCCTGTACCTTTTGACACATGTGTTTTCACCCCCCTCTGTAGATAGTGTCCATAGATGGTTATTGTGTGATGATAAAGATGCTTTGAGAGAACT
CAATGCAGTGTCAGCAGAGCCTTTACTTATGAAAGGATCTTCTGAGATTGGTTCACAAAGCTCGTTACCCATTCATTGCGATAAGGTTTTAACTGAACCA
ACTCCTGTGGCTCATTTGATGCCTATCTTGAATCAAGCACCACAAGCAACAAATATGAATGATAATGCAGAATCTCACCTTTCTAGTGATGAGGCTCAAA
GAAAATTGCAGAGTGAAGGAAATATCATGAAACTCAATCCATGCACCAATTGCCCCATGGATATCTCTCAAATTTCAGGCCCAGATAGGACATCAAGGCT
CACTCCACTTAGTCAAATTGGGTTTCGGGATTCTGCCAGTGTTGGTGCCGGGCAACAACTGACATCATTAAGTATAGAGGTTCAAGCAGAATCTAGAGGA
GATCTCCGACCAAATCCTCGGTTTGATGCCATCAATGTCGTGGTTCTTGCGTTTCAGAATGATGGTGACTCTGCTGTTGAAGTTCATGTGCTTTTATGTA
GTAAAAGTGAATCTTGCCAAAGGAGTTATGATGGAACATCTGGGTGTAGTGTGCTTGTTTTCTCTGAGGAGAAGCACTTGTTTAGTCATTTTATGGCGAT
TATTGTTTCATTTGATCCAGATATTTTAATGGGTTGGGATGTACAAGGTGGTTCTCTTGGTTTTTTGGCTGAGAGGGCTGCACATCTTGGTATAGGCCTA
CTTAATAATATCTCTCGGACACCATCGGAAGCCAACATAGATGTTGGAGAAAGAGAAAATTCAGGAAAGGTAATACTAGATACTATGCTTAAAGAGTCAT
TAATTACTGATTCTGCACTTGTAGAAGATACAGTAATTGAGGATGAATGGGGCCGAACTCATGCCAGTGGTGTCCATGTCGGTGGTAGAGTTGTCCTCAA
TGTATGGCGACTGATGCGTGGTGAAGTAAAGCTTAACATGTATACTGTTGAAGCTGTTGGTGAAGCTCTTTTGAGGCGAAAAATACCATCAATTCCTTAC
AAAGTGTTGACAAAATGGTTTGCAAGTGGTCCTGGACGAGCCAGATATAGATGCATTGAATATATGATAGATAGAGCAAAATTGAACCTTGAGATAATGA
ATCAACTTGACATGATAAATCGAACATCAGAACTTGCTCGTGTATTTGGCATTGACTTCTTTTCTGTTCTTTCTCGAGGTTCACAGTATCGTGTTGAATC
TATGTTTCTGAGATTGGCACATACACAAAACTATCTTGCCATTTCTCCTGGGAATCAACAGGTGGCTTCTCAACCTGCAATGGAGTGTTTACCTCTGGTG
ATGGAGCCAGAATCTGGTTTTTATGCAGATCCAGTTGTTGTCTTGGATTTTCAGTCTCTTTATCCATCGATGATAATCGCATACAACCTTTGCTTTTGTA
CGTGTCTTGGAAATGTTGCACCTTCAAAGGCAAATACACTGGGGGTTAGTTCATTTTCAACAGATCCAAGTGTTTTGCGAGATTTGAAAGATAAAATACT
GCTTACTCCAAATGGCACTATGTATGTGCCTTCAGAGATTCGAAAAGGTGTTCTGCCCCGTTTATTAGAGGAAATATTGTCAACTCGAATAATGCTGAAA
CAAGCAATGAAGAAGTTGGCTCCCTCACAACAAGTTCTTCACAGGATATTTAATGCAAGACAGCTTGCTTTGAAGCTGATCGCAAATGTAACCTATGGCT
ATACAGCTGCTGGATTTAGTGGTCGCATGCCTTGTGCAGAGCTTGCTGACAGTATTGTTCAGTGTGGCCGAAGCACACTGGAAAAGGCTATTTCTTTGGT
AAATGCAAATGAAAAGTGGAAGGCTAAAGTGATATATGGTGATACTGATAGCATGTTTGTCCTCCTCAAGGGACGCAGTGTCAAAGAATCTTTTCAAATT
GGACGTGAAATAGCATCAGCTGTAACTGCAATTAACCCAGATCCAGTTACTCTCAAATTGGAGAAAGTCTATCATCCATGCTTCCTCCTTACTAAGAAAC
GCTATGTTGGTTACAGTTATGAGAGTGCTGATCAGATTGAACCTATGTTTGATGCTAAAGGTATCGAGACAGTTCGCAGAGATACTTGTGGTGCTGTTGC
CAAGATAATGGAGCAGTCGCTGAGAATCTTTTTTGAACATGAAGACATCTCTGAGGTTAAAACATATTTGCAGCGTCAATGGACACGGATTCTATCTGGA
AGAGTGTCTCTTCAAGATTTTGTTTTTGCAAAGGAAGTTCGGTTGGGTACCTACAGTACAAGGGCTTCTGCAGCACTCCCACCAGCAGCAATTGTAGCTA
CAAAAGCAATGAGAACTGATCCCCGGGCAGAGCCATGCTATGCAGAGCGAGTGCCTTATGTTGTGATCCACGGGGAGCCAGGCGCTCGACTAGTGGATAT
GGTTGTTGATCCATTGGACCTCTTGGCCATTGATTCCCCTTTCAGATTAAATGATGTATATTACATCACCAAGCAGATAATCCCAGCTTTGCAGCGGGTT
TTTGGACTTCTTGGTGCTGACTTAAACCAGTGGTTTTCAGAGATGCCCCGACCAGCCCGGGAAGCTCTTTCTAAGCACCCTTCATATGCTCCAAATCCTC
AAAGAACCAGAATAGACTATTATTATCTTTCAAAACACTGTGTCCTTTGTGGTGAGTTGGTCCAAGCATCAGCACATATATGCAACAAGTGTTCACAGAG
GGAAATTGCTGCTGCAACAGCTGTGATTGGAAGGACTTCCAAATTGGAGAAGGAGATGCAACACCTTGCTGCTATATGTCGACATTGTGGAGGTGGGGAC
TGGCTTTTGGAGAGCGGGATCAAGTGCACCTCACTCGCATGCTCAGTGTTCTACGAGAGGCGTAAAGTTCAGAGAGAACTACAGGGTCTCTCTGCTGTTG
CTGGAGATGTAGGTTTGTACCCTAAGTGTATGGTTGAATGGTTTTGA
|
|||||||||||||||||||||||||||||||||||
|
AA sequence
|
>Potri.013G022200.2 pacid=42812561 polypeptide=Potri.013G022200.2.p locus=Potri.013G022200 ID=Potri.013G022200.2.v4.1 annot-version=v4.1
MADSQPADSSKIFSLRIVSIDHYMSPPIPGVDICYSSFQGGKVNEVPVIRVYGSTPAGQKTCLHVHRAFPYLYVPCLDIPINGNREGDAYTHAISLALEK
ALKLKGNVGSKRQHVHGCSLVRAKKFYGYHSDEELFVKIYLYYPHDVSRAANLLLSGAVFDKSLQPHESHIPFILQFLVDYNLYGMGHLHLSKMKFRNPV
PDSFTPRKFSNQRQDGPEMDESTCISADFQADSSSGQCLVSPVWISSTIPSSWMWQFSSEFDVSSDQDMQRCKRQSVCNLEGDATIDDILNQQSKMYTSL
SQARSDVKMVQSLIPIWEEEHERTGINEVTILPDPGKPLPGDVLKTLLHALEFERKLSELCIKTEGDLPLSESKINVLPTVTFTTDGENLAEHENVNSDN
ANEEFLKCSAEQDTIQSSAQGSVCEETDATPTEMKDLCLKLSSEIIGTVDPKVADEEALGLLRWLATSQAAEDINSDDELICDTILSPLLPAATIDKVLE
KANIDYESESQKECQDILDSIEDLVNFEVFKEKASHSVDHSPQTSLEKKVLQSDTLRSSPYGSAGSSFKVESKSECKGYSQDQILPTTDSCISNKQKRNR
SLWCSLPFSINQKANDDPEVARSKVVDLHVDESKNYAGTVMTGNEEAKCSDALVNADKNACEASVLVGCSVRDMMRRKRSRRTAQHGDGSVRVKNVHLGG
EQDESNTLFPKQLDLHILPNDENDKRVYGPLDFRPSVNNQQTEFLETCAPKAIPHASSSASSMQVVTNPLSADTRREELQCTFTPPKQDAVVSMVGCEIN
KGKEFDFGGVTSIEPITSTVSSKFDSLPDNYLSKHILLADKRLERTEAAGSNCSPALPIDHDMFARDSYKPKYVHQGRISLQNLYDIPTTHLIGMGMSVD
TGLQSENCAANQEGDSGLSILGSSAPEAFKMGGETIDLLGMTFCKKPPTAEWKDGASENVSFSPAPSFLPSSANVENKDRTSGCIFNFLGEHLPFFDGDY
HDKKGVEIKSSSNIDFNAPQEAIIGVPTHYLNDGSVLYLLTHVFSPPSVDSVHRWLLCDDKDALRELNAVSAEPLLMKGSSEIGSQSSLPIHCDKVLTEP
TPVAHLMPILNQAPQATNMNDNAESHLSSDEAQRKLQSEGNIMKLNPCTNCPMDISQISGPDRTSRLTPLSQIGFRDSASVGAGQQLTSLSIEVQAESRG
DLRPNPRFDAINVVVLAFQNDGDSAVEVHVLLCSKSESCQRSYDGTSGCSVLVFSEEKHLFSHFMAIIVSFDPDILMGWDVQGGSLGFLAERAAHLGIGL
LNNISRTPSEANIDVGERENSGKVILDTMLKESLITDSALVEDTVIEDEWGRTHASGVHVGGRVVLNVWRLMRGEVKLNMYTVEAVGEALLRRKIPSIPY
KVLTKWFASGPGRARYRCIEYMIDRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMFLRLAHTQNYLAISPGNQQVASQPAMECLPLV
MEPESGFYADPVVVLDFQSLYPSMIIAYNLCFCTCLGNVAPSKANTLGVSSFSTDPSVLRDLKDKILLTPNGTMYVPSEIRKGVLPRLLEEILSTRIMLK
QAMKKLAPSQQVLHRIFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAISLVNANEKWKAKVIYGDTDSMFVLLKGRSVKESFQI
GREIASAVTAINPDPVTLKLEKVYHPCFLLTKKRYVGYSYESADQIEPMFDAKGIETVRRDTCGAVAKIMEQSLRIFFEHEDISEVKTYLQRQWTRILSG
RVSLQDFVFAKEVRLGTYSTRASAALPPAAIVATKAMRTDPRAEPCYAERVPYVVIHGEPGARLVDMVVDPLDLLAIDSPFRLNDVYYITKQIIPALQRV
FGLLGADLNQWFSEMPRPAREALSKHPSYAPNPQRTRIDYYYLSKHCVLCGELVQASAHICNKCSQREIAAATAVIGRTSKLEKEMQHLAAICRHCGGGD
WLLESGIKCTSLACSVFYERRKVQRELQGLSAVAGDVGLYPKCMVEWF
|
DESeq2's median of ratios [POPLAR]
Coexpressed genes
Potri.013G022200 coexpression network
*The number of genes in the network is adjusted within 50 genes.*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.