Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55040 543 / 1e-179 zinc finger (Ran-binding) family protein (.1) AT1G70650 188 / 2e-51 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) AT5G17790 141 / 3e-34 VAR3 VARIEGATED 3, zinc finger (Ran-binding) family protein (.1) AT1G48570 136 / 7e-34 zinc finger (Ran-binding) family protein (.1) AT1G53460 60 / 4e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G033000 [exp] 999 / 0 AT1G55040 531 / 5e-177 zinc finger (Ran-binding) family protein (.1) Potri.010G107400 [exp] 228 / 1e-64 AT1G70650 449 / 4e-154 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Potri.015G038200 [exp] 175 / 4e-47 AT1G48570 335 / 4e-111 zinc finger (Ran-binding) family protein (.1) Potri.012G046500 [exp] 177 / 2e-46 AT1G48570 338 / 3e-110 zinc finger (Ran-binding) family protein (.1) Potri.013G067200 [exp] 159 / 8e-40 AT5G17790 466 / 6e-152 VARIEGATED 3, zinc finger (Ran-binding) family protein (.1) Potri.001G376900 [exp] 63 / 4e-10 AT1G53460 254 / 3e-83 unknown protein Potri.001G056000 [exp] 47 / 5e-05 AT1G67325 340 / 5e-118 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Potri.010G170700 [exp] 44 / 0.0006 AT1G50300 320 / 2e-107 TBP-associated factor 15 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015180 [exp] 526 / 1e-173 AT1G55040 614 / 0.0 zinc finger (Ran-binding) family protein (.1) Lus10031502 [exp] 393 / 7e-125 AT1G55040 421 / 5e-137 zinc finger (Ran-binding) family protein (.1) Lus10032790 [exp] 223 / 3e-63 AT1G70650 428 / 2e-146 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Lus10009049 [exp] 186 / 1e-50 AT1G48570 365 / 7e-123 zinc finger (Ran-binding) family protein (.1) Lus10003580 [exp] 178 / 5e-49 AT1G70650 323 / 8e-108 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Lus10009681 [exp] 151 / 4e-39 AT1G48570 334 / 3e-111 zinc finger (Ran-binding) family protein (.1) Lus10013630 [exp] 152 / 2e-37 AT5G17790 338 / 4e-103 VARIEGATED 3, zinc finger (Ran-binding) family protein (.1) Lus10003872 [exp] 145 / 2e-35 AT5G17790 453 / 1e-148 VARIEGATED 3, zinc finger (Ran-binding) family protein (.1) Lus10031503 [exp] 92 / 4e-21 AT1G55040 105 / 2e-26 zinc finger (Ran-binding) family protein (.1) Lus10043289 [exp] 50 / 2e-06 AT2G26695 198 / 8e-66 Ran BP2/NZF zinc finger-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [poplar] [flax] Zn_Beta_Ribbon PF00641 [poplar] [flax] zf-RanBP Zn-finger in Ran binding protein and others
Representative CDS sequence Show only first row Show all	>Potri.013G022300.1 pacid=42811566 polypeptide=Potri.013G022300.1.p locus=Potri.013G022300 ID=Potri.013G022300.1.v4.1 annot-version=v4.1 ATGGCACAGACACCAATCTCTCTCCTTCTCTTAAGACGCCTAACTCTCTCATCCCAAAACCCTAAATCACCACTCTCTCTCCTCATCTTTAACAACTTTT ACCTTAAACCCTACTCAACCACCACAACTGATAACCCCTCCACTGAGCAACCAAAACCCAGCCCTCTCTCAGCTCGATTGAGCTTTGTCTTTGATCAAAT TGATTCCATTGAACGTGAGCGTGCTGAAAAACACCAAACCCTCCAAAAAATCCGTGCTTGGCGCCAATCCAAAGACACCCCACAGCAAGAACAGCAAGAG CAAAACCCAGAAACCATTACTACCCGAAACCCAGAACTTGTTGGGTCTCAAAACCCAGAAACGATTCTCTCTCAAAATGAAAATTTGGAATCTGGGCTAA GTGATGATGGTGATTCTAGCGTTGATCTTGAAGAGTCTGATATGATAGAGTTGAAGAGGAAGGAAGTGGAGTTGGTGCATCCATGGCCAGAGTGGATAGA GTTGATGGAGAGATTGGTGCAACAGAATTATTTTGATCATAGAAGGAAAGTTGCGGACAATATGGTAGAAAGTTTGGGACTTGATGTTTCTGGGGTTGGG TATGATTGTGATGGTGATGGTGTTGGCATTGATTTTAATGATTACAAAACTGTACAGACTGCTTGTCTTAATTTTGGCAAAGACCGGTTTGATATCTTCA GGTCATTGTCGAGACAGGATATTCAAATTTTGGTAGGCTATGGATGCCCAAGCGTGGACAAGAAGGTTGTCTTCTCTTCAAAGCTTTTGAGGAAGCATGT CCACCTTGATGAAGGGGATGTCTGTAGTAACTGCAGTCTGAGGAGCTCATGTGAAAGAGGATATCTAGTAACTAATAAAGAGGATGAGGCACGGACTATT GACCTTATGAGGGTTCTTTTAGCTCATGGTTTTGAATCCATAAATGGATCGGTAACCAATAAGTCTCTTCTGAAACAAAAATCCGTTAGAACTGTTGTTC GTAAGCTACTTCATGAGGTTGTAAAGTTGGGTGCAGTTCCAATAGATCCAAATCTCCCCCCTCCAGTGATTAAAAGGCCTCCACCAAAAGTGAAGCAACC TCCTCCTCCTCCCAGGAAACGAGTCGGACGTGATGACATTGAGATGAAAAGGGGGGATTGGCTGTGTCCCAAGTGTGACTTCATGAATTTTGCCAAGAAT GCAGTGTGCTTACAATGTGATGCAAAGCGGCCCAAGAGACAGTTGCTTCCAGGGGAATGGGAATGCCCAGAGTGTAACTTCTTAAATTATAGGAGAAACA TGGCATGTTTCCATTGTGATTGCAAGCGTCCACCTGATGCATTTATGGAAAATAAAATGGAAGAAAGGCAGTATGGTAGCAGAACAAGGTCGGAGAAGAT TGTCAGCCGCCAAGAAGTTTCCAATGCCTGGAATTTTGACTTTGATGACAATGAATCAGATGGGGCAGATGTTGCTGCTTTTGAGCATGCAGATTCTGCA TCAATGGTTGAAGACTCGCCTCTGGAGAGTCAAGCTAAGGAAGGAGATTTTGGACGGAATGCAGACGCTTTAAATGGAACCAGAAGAATTTCAAGGGTCC ATGAAAGAGAATATTCTGATCCTGGGCATGATGGCTTTGGAAGGGGCTTTGATGATTTTGATGATGAAGATGATATTAACAGTTATGAAATAGATACCCA AAATAATAAACCTGCATGGAAGACTTCTCAAAACAATTTTTCTGATCAAGGGATTTCTGAATTGGAAGGTGATGGAGGTTCTGATGACAATTTGGGCAGC CGGCTCATGACAAATCCTTCTGTTAAGCCATCAAAGCCCAGGAGTCAAAGAGCAACTTTCTCTGGCTCTGATGGGAACGAACTGGGTATTGATTCAGATG AAGAGCACTCAGTTCATCCGAAATGGAAATCCAGTCATGTTGCTGATGTTAGACACAAAAATAGAGGTAGAGGCCCAACGGGCCCTTCCAAGGGATTAAG TTTTGGGTCAGACGAAGAACTTGAGCTTGATTCTGATGTGGATGATGATTTTGGTTCCCGCCAGAGGAAACAGAGAACAAAGGGTTCTGCTAGAAGAAAT GAGAGAAATTCTGATTGGGAAGATGCTTCCATTTCTGGTTCAGAATCCGATGGCAATGATCGGCGTTCCTGGAGAAATAAGTCGGGAGGTAACAAAACTG GATTTGGTAGAAGAGATAACAATTTTAGGGATTGTGATAATGACTTTGTGAGAGACAATGAGATGAGAACGAATGGTAAGATGGGTGATAGAAGAAAGTC TTGGGGTGATAATTTTGATAGATCATCACCTGGTCCCCATGGTAAAAATAGAGGATTTCAAGGCAATGACCGTTCTGGGTGGAAAATGAATGATGCAGGT GGTGACAGAAGAAAGTCTTGGAGTAATGATTTCGATAGATCATCACCAGGTCCTCATGGTAAAAATAGAGGATTTCGAGGCAATGACCATTCTGGGTGGA AAATGGATGATGCAGGTGGTGACAGAAGAAAGTCTTGGAGTGATGATTTTGATAGATCATCACCAGGTCCTCATGGTAAAAACAGAGGATTTCGAGGCAA TGACCGTTCTAGGTGGAAAATGGATGATGCAGGTGGTGACAGAAGAAAGTCTTGGAGTGATGATTTCGATAGATCATCACCAGGTCCTCATGGTAAAAGC AGAGGATTTCGAAGCAATGACCGTTCTGGGTGGAAAATGGACAATGCAGGTGGTGATTCACGGAATTTTAATGGACCAAAACGAGAAGGATTTAGAAAAC GGCAAGGAGGAAGGTCGCAAGAATACAATATGGACAAGGATCCTGGTGAATTTAGAAATAGCCGACGTGTTATTGAAAGGTAA
AA sequence Show only first row Show all	>Potri.013G022300.1 pacid=42811566 polypeptide=Potri.013G022300.1.p locus=Potri.013G022300 ID=Potri.013G022300.1.v4.1 annot-version=v4.1 MAQTPISLLLLRRLTLSSQNPKSPLSLLIFNNFYLKPYSTTTTDNPSTEQPKPSPLSARLSFVFDQIDSIERERAEKHQTLQKIRAWRQSKDTPQQEQQE QNPETITTRNPELVGSQNPETILSQNENLESGLSDDGDSSVDLEESDMIELKRKEVELVHPWPEWIELMERLVQQNYFDHRRKVADNMVESLGLDVSGVG YDCDGDGVGIDFNDYKTVQTACLNFGKDRFDIFRSLSRQDIQILVGYGCPSVDKKVVFSSKLLRKHVHLDEGDVCSNCSLRSSCERGYLVTNKEDEARTI DLMRVLLAHGFESINGSVTNKSLLKQKSVRTVVRKLLHEVVKLGAVPIDPNLPPPVIKRPPPKVKQPPPPPRKRVGRDDIEMKRGDWLCPKCDFMNFAKN AVCLQCDAKRPKRQLLPGEWECPECNFLNYRRNMACFHCDCKRPPDAFMENKMEERQYGSRTRSEKIVSRQEVSNAWNFDFDDNESDGADVAAFEHADSA SMVEDSPLESQAKEGDFGRNADALNGTRRISRVHEREYSDPGHDGFGRGFDDFDDEDDINSYEIDTQNNKPAWKTSQNNFSDQGISELEGDGGSDDNLGS RLMTNPSVKPSKPRSQRATFSGSDGNELGIDSDEEHSVHPKWKSSHVADVRHKNRGRGPTGPSKGLSFGSDEELELDSDVDDDFGSRQRKQRTKGSARRN ERNSDWEDASISGSESDGNDRRSWRNKSGGNKTGFGRRDNNFRDCDNDFVRDNEMRTNGKMGDRRKSWGDNFDRSSPGPHGKNRGFQGNDRSGWKMNDAG GDRRKSWSNDFDRSSPGPHGKNRGFRGNDHSGWKMDDAGGDRRKSWSDDFDRSSPGPHGKNRGFRGNDRSRWKMDDAGGDRRKSWSDDFDRSSPGPHGKS RGFRSNDRSGWKMDNAGGDSRNFNGPKREGFRKRQGGRSQEYNMDKDPGEFRNSRRVIER

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G55040			zinc finger (Ran-binding) fami...		Potri.013G022300 [exp]	0	1
AT2G38770		EMB2765	EMBRYO DEFECTIVE 2765, P-loop ...		Potri.003G201200 [exp]	1.00	0.9592
AT5G09840			Putative endonuclease or glyco...		Potri.001G307700 [exp]	1.41	0.9407
AT3G22330		ATRH53, PMH2	putative mitochondrial RNA hel...		Potri.006G024100 [exp]	2.44	0.9373
AT1G06710			Tetratricopeptide repeat (TPR)...		Potri.007G123600 [exp]	2.82	0.9217
AT1G10270		GRP23	glutamine-rich protein 23 (.1)		Potri.004G227800 [exp]	2.82	0.9369
AT4G14850		MEF11, LOI1	lovastatin insensitive 1, Pent...		Potri.010G086900 [exp]	3.74	0.9271
AT5G46920			Intron maturase, type II famil...		Potri.001G147801 [exp]	4.24	0.9283
AT4G04670			Met-10+ like family protein / ...		Potri.004G015200 [exp]	4.47	0.9028
AT1G52380			NUP50 (Nucleoporin 50 kDa) pro...		Potri.001G179100 [exp]	5.19	0.9145
AT3G18020			Pentatricopeptide repeat (PPR)...		Potri.015G039300 [exp]	5.47	0.9341

Compare expression of checked genes

Potri.013G022300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.