Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05330 359 / 8e-122 ATN ,ATTAN A. THALIANA TAN1, TANGLED, cyclin family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G033200 [exp] 629 / 0 AT3G05330 335 / 1e-112 A. THALIANA TAN1, TANGLED, cyclin family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004488 [exp] 346 / 2e-117 AT3G05330 273 / 7e-88 A. THALIANA TAN1, TANGLED, cyclin family (.1) Lus10029912 [exp] 335 / 7e-113 AT3G05330 280 / 2e-90 A. THALIANA TAN1, TANGLED, cyclin family (.1) Lus10002423 [exp] 63 / 4e-12 AT3G05330 54 / 2e-09 A. THALIANA TAN1, TANGLED, cyclin family (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.013G022600.1 pacid=42811679 polypeptide=Potri.013G022600.1.p locus=Potri.013G022600 ID=Potri.013G022600.1.v4.1 annot-version=v4.1 ATGGTTGCAAGAACCCCACCAGAGCAGAGGAAAATGGTGGCTCCTCTCAACCCAGTTTTACTCAGAGAAACTGTAAAGAAGGTGGAAAGATGTATGGCTA GATTGCAAGAGCTTCAATACACAGTGGCAGGTGGGAATAAGGTGATAGATGGGGTTAGTCTCAGTCCTAGAAGTACCAGAGGGTATCTAAGAACTAGTCT TAGGTGCAAGCAAGAATCTTTAAGGACCAAGAGTACTGCCCCTAAGAAATCTCCAGTGGGGAAGCTGCCAGCAACTTCAATAGGCGAATGGCGGCGAATG TCTTTACCAGCAATGCTAGTAGGTGAAACAGTGGGAGAGATTCTACAAGCAAGCCAATTTGCAAGAGAAATTGTTGCAGCTGTTGCTTGCAAAACCAAGA AATCTACCCTTGAAGACCCCAAAACTCCAGTGACCCAACAGAGAAAACAAAGGCCTCACCCTGAAGACACTGAACTCAAATCCAGAAGGAAGAAGGAAAA GCAAACTAAATTACAGTCAATTCGATCAGAATCCGATTCTCCATGTCTTTTAAGAGCTCGATCGCGTATTAACTTCAAGGTTTCACCTCCTAAGAAGAGT GAAGTGGATAAAGAAAATGCTCGGTATTTGGCAAACAGAGTGTCTCCTAGGAATAGGCCATGGGCTAAAAAGACAGTACTGTTTCCAAACCCTTTGTTCC TTTCTACAGATTCTACACAGCAGCAAAAGTTTTGCAAGACAAGGTCTCCAGTGATTGCAAGAAACAAAAAGCAGACAACCCCACATAAGTTCTTGATTAA GTCCCCTCCATCAGGTTCAAAATTCCAAGTAAAGATCAAGAACCCACCAGTTGTCTGTTCCCTATCACCTACAAGACCTACAAACTTAAGCAGGAAATCA CCTACAAGACCTACAAACTTAAGCAGGAAATCACCTAAGTTGTCAACTGCATCGAAGTTGCGTCGATCATTTTCACCTTCAAGGTTGGCCAACAAATTGG TGTCTCCATTGAAAGGCAGAAAAATTGTGCTGAAGAGTGATGGGTTAATAATGAGTGGACTGAAACAGCGTCCAATAGCAACACCGAGACGGTTCTCACT GGGGAGAATTTGA
AA sequence Show only first row Show all	>Potri.013G022600.1 pacid=42811679 polypeptide=Potri.013G022600.1.p locus=Potri.013G022600 ID=Potri.013G022600.1.v4.1 annot-version=v4.1 MVARTPPEQRKMVAPLNPVLLRETVKKVERCMARLQELQYTVAGGNKVIDGVSLSPRSTRGYLRTSLRCKQESLRTKSTAPKKSPVGKLPATSIGEWRRM SLPAMLVGETVGEILQASQFAREIVAAVACKTKKSTLEDPKTPVTQQRKQRPHPEDTELKSRRKKEKQTKLQSIRSESDSPCLLRARSRINFKVSPPKKS EVDKENARYLANRVSPRNRPWAKKTVLFPNPLFLSTDSTQQQKFCKTRSPVIARNKKQTTPHKFLIKSPPSGSKFQVKIKNPPVVCSLSPTRPTNLSRKS PTRPTNLSRKSPKLSTASKLRRSFSPSRLANKLVSPLKGRKIVLKSDGLIMSGLKQRPIATPRRFSLGRI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G05330		ATN ,ATTAN	A. THALIANA TAN1, TANGLED, cyc...		Potri.013G022600 [exp]	0	1
AT4G28430			Reticulon family protein (.1)		Potri.017G014300 [exp]	2.23	0.9713
AT5G12930			unknown protein		Potri.001G017100 [exp]	7.48	0.9616
AT5G15510			TPX2 (targeting protein for Xk...		Potri.004G118700 [exp]	8.83	0.9636
AT4G02800			unknown protein		Potri.002G053100 [exp]	10.24	0.9619
AT3G05330		ATN ,ATTAN	A. THALIANA TAN1, TANGLED, cyc...		Potri.005G033200 [exp]	13.03	0.9614
AT2G20590			Reticulon family protein (.1.2...		Potri.007G137700 [exp]	13.19	0.9595
AT5G44560		VPS2.2	SNF7 family protein (.1.2)		Potri.001G442500 [exp]	14.42	0.9506
AT5G15510			TPX2 (targeting protein for Xk...		Potri.017G092100 [exp]	14.69	0.9593
AT1G13890		ATSNAP30, SNAP3...	soluble N-ethylmaleimide-sensi...		Potri.008G093800 [exp]	14.73	0.9594	SNAP30.2
AT4G02800			unknown protein		Potri.005G209400 [exp]	16.12	0.9590

Compare expression of checked genes

Potri.013G022600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.