Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ANP1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09000 714 / 0 MAPKKK1, ANP1 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) AT1G54960 645 / 0 MAPKKK2, ANP2 MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASES 2, NPK1-related protein kinase 2 (.1) AT3G06030 614 / 0 AtANP3, MAPKKK12, ANP3 NPK1-related protein kinase 3 (.1) AT1G53570 296 / 1e-91 MAPKKK3, MAP3KA MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) AT1G63700 279 / 1e-82 EMB71, MAPKKK4, YDA YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) AT5G66850 239 / 5e-69 MAPKKK5 mitogen-activated protein kinase kinase kinase 5 (.1) AT4G08500 235 / 2e-68 ARAKIN, ATMEKK1, MAPKKK8, MEKK1 MAPK/ERK kinase kinase 1 (.1) AT3G13530 238 / 1e-66 MAPKKK7, MAP3KE1 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1) AT3G07980 236 / 6e-66 MAPKKK6, MAP3KE2 MAP3K EPSILON PROTEIN KINASE 2, mitogen-activated protein kinase kinase kinase 6 (.1) AT4G08470 214 / 3e-61 MEKK3, MAPKKK10 MAPK/ERK kinase kinase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G033400 [exp] 1100 / 0 AT1G09000 680 / 0.0 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) Potri.008G149500 [exp] 739 / 0 AT3G06030 681 / 0.0 NPK1-related protein kinase 3 (.1) Potri.010G092000 [exp] 712 / 0 AT3G06030 698 / 0.0 NPK1-related protein kinase 3 (.1) Potri.007G106800 [exp] 295 / 1e-90 AT1G53570 582 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) Potri.005G062500 [exp] 290 / 9e-89 AT1G53570 566 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) Potri.001G102900 [exp] 277 / 1e-81 AT1G63700 868 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.015G146700 [exp] 273 / 2e-80 AT1G63700 826 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.012G143900 [exp] 273 / 3e-80 AT1G63700 766 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.003G129000 [exp] 264 / 5e-77 AT1G63700 850 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015185 [exp] 784 / 0 AT1G09000 692 / 0.0 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) Lus10031506 [exp] 758 / 0 AT1G09000 659 / 0.0 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) Lus10010519 [exp] 599 / 0 AT3G06030 726 / 0.0 NPK1-related protein kinase 3 (.1) Lus10034060 [exp] 598 / 0 AT3G06030 730 / 0.0 NPK1-related protein kinase 3 (.1) Lus10002096 [exp] 295 / 1e-86 AT2G13680 1077 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Lus10032279 [exp] 273 / 4e-80 AT1G63700 904 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10024645 [exp] 270 / 2e-79 AT1G63700 905 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10014976 [exp] 269 / 2e-79 AT1G63700 704 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10027496 [exp] 270 / 3e-79 AT1G63700 855 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10000829 [exp] 259 / 1e-77 AT1G53570 537 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.013G022700.2 pacid=42812229 polypeptide=Potri.013G022700.2.p locus=Potri.013G022700 ID=Potri.013G022700.2.v4.1 annot-version=v4.1 ATGCAAGACTTCTTGGGATCAGTTAGGAGATCAATAGTATTCCGTACACCCCCACAAGATCATAATCCCAATCAAGAAACCAATTACTGCAGTCCAAACA ATCCATTAACTTCAACATTAGTTGACAAATTAAATAACTGCGTTCGTAAATCAAAAATCTTTAACAAACCCACTTCTCCGTCTTCACTTCCAATGCCTCC TCCGATCCGGTACCGTAAAGGGGAGTTGATTGGTTGTGGTGCATTTGGCCATGTTTATATGGGCATGAATCTTGATTCTGGAGAGCTTTTAGCGATAAAG CAGGTTTTGATTGCAGCTAATGGAGCTACAAGAGAGAGAGCTCAGGCTCACATCAGAGAGCTTGAGGAAGAAGTGAAGCTTCTACAGAATCTCTCCCATC CTAACATTGTTAGATATTTGGGTACAGTTAGGGAGGAGGAAACCTTAAATATTTTGCTTGAATTTGTCCCGGGTGGATCAATATCATCTCTTTTGGGGAA ATTTGGATCCTTCCCTGAGCCAGTTATAAGAGCCTATACCAAGCAATTATTGCTGGGGTTGGAGTATTTACATAACAATGGAATTATGCACAGAGACATC AAGGGAGCAAACATTCTTGTAGATAATAAAGGGTGCATTAAACTTGCAGATTTTGGTGCATCAAAACAGGTCGTTGAGCTGGCAACTGTTTCAGGGGCCA AATCGATGAAGGGCACGCCATACTGGATGGCTCCTGAAGTCATTCTGCAGACGGGGCATGGCTTCTCTGCTGATATATGGAGTGTTGGATGCACAGTCAT TGAGATGGCCACTGGAAAGCCTCCTTGGAGCCAACAATACCAAGAGGTTGCCGCACTCTTTTATATAGGGTCGACGAAGTCTCATCCGGAAATCCCTGGG CATCTCACTCCAGAGGCCAAAGATTTTCTGCTCAAGTGCTTGCACAAGGAACCAAATATGAGGCCAGAGGCATCTCAATTGCTGCAGCATCCATTTGTTA CTGGGGAGATGGGCGCATCTGATCATGTTATTCATAGTCCAGTCATGGAACATTCTGGAATTCCTTTGCAGTTATACACCACTAACCCTGAAACCATTCA AATGCCATCTGCCCATGACTCAATGGATGTCTGTAATTTGGGTAGTCTAGGCTGCTCAATTGATCTGAAGAAACTGTCTGAATGTAAGGATGCATGGGAA ATACCAAACAGCAATGATGACATGTGTCTGATAAGCCATGATTTTTCTATAGATGAAATAAAGCTCAATTCTCGTTTGAGTTCTAATGACTTCAATAAGA GTTCTGATCCCAAATGTGAGCTGTCTGGAGAGTGGAGGTGCAAATTTGATGAGAGTCCAGAATTGGAACAAGCAGGAAGCAAAGTGGACACTGGTAAACC TGTTCAAGTGGACCAAAATATTTCATTTTCCTGTGGGGCATCGCTTTCTGAGGATGATGAGGAACTTACTGAGTCAAAAATTAGAGCTTTTCTTGGTGAA AAGGCTTTAGAACTGAAGAAACTGCAAACACCTTTATATGAAGAGTTCTATAACAGTTTGAATGCATCTTTCTCTCCAAGTTATGGTGGAAGTTCACGTG ATGAAACTCCTCCAAATTACTTGAAATTACCTCCTAAAAGCAAGTCACCCAGTCGGATCCCAGTTGGAAGTCCATCTACAGCATCTGATGCTGTTAGTAC TGGAAGCCCTGGGAGTAATAGACGTGCATCTAATGTTGGCAATGCAAGTGATGAAGCTTCAGAGGACAATTCATCCCCTCGGAGCAATGACCGGAAAGGG CTTCAAGTTGATGGTCAGCCAGAAACAAGTAGCCCAAGTGTGAGCTTTTCTGAGAGACAAAGGAAGTGGAAAGAAGAGCTTGACCAAGAGCTTGAGAGAA AGAGAGAGATGATGCGCCAAGCAGCCGTGGGAAGTAAGACATCGTCCCCCAAGGATAGAGCCTTGGGTCGGCAGAGAGAGCGGACAAGATTTGCATCTCC AAGCAAATGA
AA sequence Show only first row Show all	>Potri.013G022700.2 pacid=42812229 polypeptide=Potri.013G022700.2.p locus=Potri.013G022700 ID=Potri.013G022700.2.v4.1 annot-version=v4.1 MQDFLGSVRRSIVFRTPPQDHNPNQETNYCSPNNPLTSTLVDKLNNCVRKSKIFNKPTSPSSLPMPPPIRYRKGELIGCGAFGHVYMGMNLDSGELLAIK QVLIAANGATRERAQAHIRELEEEVKLLQNLSHPNIVRYLGTVREEETLNILLEFVPGGSISSLLGKFGSFPEPVIRAYTKQLLLGLEYLHNNGIMHRDI KGANILVDNKGCIKLADFGASKQVVELATVSGAKSMKGTPYWMAPEVILQTGHGFSADIWSVGCTVIEMATGKPPWSQQYQEVAALFYIGSTKSHPEIPG HLTPEAKDFLLKCLHKEPNMRPEASQLLQHPFVTGEMGASDHVIHSPVMEHSGIPLQLYTTNPETIQMPSAHDSMDVCNLGSLGCSIDLKKLSECKDAWE IPNSNDDMCLISHDFSIDEIKLNSRLSSNDFNKSSDPKCELSGEWRCKFDESPELEQAGSKVDTGKPVQVDQNISFSCGASLSEDDEELTESKIRAFLGE KALELKKLQTPLYEEFYNSLNASFSPSYGGSSRDETPPNYLKLPPKSKSPSRIPVGSPSTASDAVSTGSPGSNRRASNVGNASDEASEDNSSPRSNDRKG LQVDGQPETSSPSVSFSERQRKWKEELDQELERKREMMRQAAVGSKTSSPKDRALGRQRERTRFASPSK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09000		MAPKKK1, ANP1	MAP KINASE KINASE KINASE 1, NP...		Potri.013G022700 [exp]	0	1	Pt-ANP1.1
AT4G21740			unknown protein		Potri.011G095000 [exp]	4.24	0.8145
AT3G59090			unknown protein		Potri.005G203600 [exp]	11.31	0.7998
AT3G24495		ATMSH7, MSH7, M...	MUTS HOMOLOG 6-2, ARABIDOPSIS ...		Potri.006G159200 [exp]	13.63	0.8247
AT3G66658		ALDH22A1	aldehyde dehydrogenase 22A1 (....		Potri.008G106000 [exp]	15.77	0.8384	ALDH22.1
AT3G06600			unknown protein		Potri.012G102300 [exp]	21.21	0.7976
AT1G71070			Core-2/I-branching beta-1,6-N-...		Potri.008G128000 [exp]	21.54	0.8321
AT3G24495		ATMSH7, MSH7, M...	MUTS HOMOLOG 6-2, ARABIDOPSIS ...		Potri.006G156314 [exp]	32.93	0.8132
AT5G13000		CALS3, ATGSL12	callose synthase 3, glucan syn...		Potri.001G012200 [exp]	40.59	0.8112	Pt-CALS1.3
AT5G15070			Phosphoglycerate mutase-like f...		Potri.004G129900 [exp]	54.44	0.7603
AT1G51600	GATA	GATA28, TIFY2A,...	GATA TRANSCRIPTION FACTOR 28, ...		Potri.010G251600 [exp]	56.38	0.8050	ZML1.1

Compare expression of checked genes

Potri.013G022700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.