Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02100 302 / 6e-98 UDP-Glycosyltransferase superfamily protein (.1) AT1G22400 203 / 1e-59 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT2G36970 199 / 7e-58 UDP-Glycosyltransferase superfamily protein (.1) AT1G22380 196 / 8e-57 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT1G05680 193 / 3e-56 UGT74E2 Uridine diphosphate glycosyltransferase 74E2 (.1) AT1G22360 193 / 7e-56 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT1G22340 191 / 5e-55 ATUGT85A7 UDP-glucosyl transferase 85A7 (.1) AT1G22370 187 / 1e-53 ATUGT85A5 UDP-glucosyl transferase 85A5 (.1.2) AT3G22250 186 / 1e-53 UDP-Glycosyltransferase superfamily protein (.1) AT2G31750 186 / 3e-53 UGT74D1 UDP-glucosyl transferase 74D1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G084900 [exp] 459 / 3e-159 AT3G02100 307 / 9e-100 UDP-Glycosyltransferase superfamily protein (.1) Potri.004G123500 [exp] 361 / 6e-121 AT3G02100 439 / 9e-152 UDP-Glycosyltransferase superfamily protein (.1) Potri.004G119700 [exp] 358 / 1e-119 AT3G02100 457 / 8e-159 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G091500 [exp] 351 / 8e-117 AT3G02100 454 / 9e-158 UDP-Glycosyltransferase superfamily protein (.1) Potri.015G071900 [exp] 213 / 9e-64 AT1G24100 427 / 5e-147 UDP-glucosyl transferase 74B1 (.1) Potri.001G389200 [exp] 209 / 5e-62 AT1G05680 494 / 2e-173 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.016G019400 [exp] 203 / 1e-59 AT3G22250 494 / 3e-173 UDP-Glycosyltransferase superfamily protein (.1) Potri.006G023700 [exp] 203 / 1e-59 AT1G22370 476 / 2e-165 UDP-glucosyl transferase 85A5 (.1.2) Potri.007G049600 [exp] 202 / 2e-59 AT2G23260 422 / 1e-144 UDP-glucosyl transferase 84B1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040533 [exp] 362 / 2e-121 AT3G02100 256 / 1e-80 UDP-Glycosyltransferase superfamily protein (.1) Lus10015750 [exp] 315 / 7e-103 AT3G02100 298 / 2e-96 UDP-Glycosyltransferase superfamily protein (.1) Lus10015749 [exp] 312 / 2e-101 AT3G02100 274 / 6e-87 UDP-Glycosyltransferase superfamily protein (.1) Lus10034699 [exp] 307 / 3e-99 AT3G02100 285 / 2e-91 UDP-Glycosyltransferase superfamily protein (.1) Lus10003455 [exp] 305 / 7e-99 AT3G02100 291 / 1e-93 UDP-Glycosyltransferase superfamily protein (.1) Lus10015753 [exp] 305 / 2e-98 AT3G02100 297 / 1e-95 UDP-Glycosyltransferase superfamily protein (.1) Lus10003454 [exp] 303 / 9e-98 AT3G02100 268 / 1e-84 UDP-Glycosyltransferase superfamily protein (.1) Lus10015745 [exp] 302 / 2e-97 AT3G02100 288 / 1e-92 UDP-Glycosyltransferase superfamily protein (.1) Lus10003453 [exp] 293 / 3e-94 AT3G02100 276 / 6e-88 UDP-Glycosyltransferase superfamily protein (.1) Lus10015751 [exp] 284 / 2e-90 AT3G02100 281 / 7e-90 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.013G022800.1 pacid=42812018 polypeptide=Potri.013G022800.1.p locus=Potri.013G022800 ID=Potri.013G022800.1.v4.1 annot-version=v4.1 ATGGATTGCAGTCCTTCTAAAGTTTCTGGCACAGCCATTACTGCTCATGTACTCATTCTTACATTACCTGCACAAGGGCATGTTGCCCCGACGATGAAGT TGGCATACCGCCTTGCTGATCTTGGAGTCAAAGTCACTTTTCTTACAGCAGAATGTACATTTGATCAACTTGACAGTGAGCAATCAAGAAATAAGGATGC ATTGCCAAAGATCCAGGGTGGACCTTATCAGGAGAGGGTGAAGACAGTTTTTTTTCCTGATGGACTGAAAAGTACAGAATTAGATGAGAGAAGAGATACT GTGAAGTTCTTGGAGAGAATTGCAAAGGTCATGCCCTATCATGTGGAGGAATTCATCAAGAAGGCTAATCAACCTGAGTCTGAGAAGGATGAAAAGATTA CTTGTGTAATTGCTGATTTGGTCGTGGCATGGGCACTGGAGATTGCAAATAAGATGGGGCTAAAAGGGGCTATCTTTCTTTCATCAGCACCAGGAATTGT ATCCATGGTGTTGCAAATACCACATCTTATTGAGGCTGGCATCATCGATGCTGAAGGAACTCCAAAAAAGAAGGAAAAGGTTATGTTGTCACCATATCTG CCAGCTCTGAGCAGTGATGATTATGTGTGGAATTTCCCAGGAAACAAAGAGTTGCAAAAGGTTGGGTTTGAATTTGTGCGTTCCGGTGAGCCTTTTCTGA GAACATCCAACTGGGTTCTGTGCAACTGGTATCGCGACCTTGATCCTTCAGCTGATGGTTTACTCCCAACCACATTATCGATTGGTCCACTACTTGCAAA TGATCGGCCTAGTGGAAATATGTTTTCAGAGGACCTTACTTGTTTAAGCTGGCTCGACAGACAACCACCAGGATCGGTTGTTTATGTCTCTTTTGGCAGC ACAGGGACATTTAATTCTCATCAATTTGATGAATTAGCCCTTGGCCTTCAACTTGTGGGCAGACCATTTCTCTGGGTGGTGCGGCCGGACATCAGCCATG AGGTTGCTAGTGCTACTGATGGTCTCCGAAATAGAGGAGCAGATGATCATCAGCTTGGAAAGATAGTTCAGTGGGCACCTCAAGAAAAAGTGTTGGCTCA CCCTTCTGTTGGATGCTTCTTAACTCACTGTGGTTGGAACTCAACCGTAGAGGGCATGAGCATGGGGGTTCCCCTGCTTTGCTGGCCTCACATGAGAGAT CAATTCTATGTCAGGACTTGCATCTGTGATGGCTGGAAGGTTGGTTTGGAGTTGAAGCCAAACGAAGATGGGATCTTTACAAGGCATGAAATCAAAAGCA AAGTGGATGAATTGCTCATCAATGGTGGTATAAGAGAAAATGCACTCAAGATTAAGAGGTTGGCTCAGATGAGTTTGTCCAAAGGTGGATCCTCTTCAAA AAATCTGGAACAATTTGTCGCCGAACTTGTGCTTTGA
AA sequence Show only first row Show all	>Potri.013G022800.1 pacid=42812018 polypeptide=Potri.013G022800.1.p locus=Potri.013G022800 ID=Potri.013G022800.1.v4.1 annot-version=v4.1 MDCSPSKVSGTAITAHVLILTLPAQGHVAPTMKLAYRLADLGVKVTFLTAECTFDQLDSEQSRNKDALPKIQGGPYQERVKTVFFPDGLKSTELDERRDT VKFLERIAKVMPYHVEEFIKKANQPESEKDEKITCVIADLVVAWALEIANKMGLKGAIFLSSAPGIVSMVLQIPHLIEAGIIDAEGTPKKKEKVMLSPYL PALSSDDYVWNFPGNKELQKVGFEFVRSGEPFLRTSNWVLCNWYRDLDPSADGLLPTTLSIGPLLANDRPSGNMFSEDLTCLSWLDRQPPGSVVYVSFGS TGTFNSHQFDELALGLQLVGRPFLWVVRPDISHEVASATDGLRNRGADDHQLGKIVQWAPQEKVLAHPSVGCFLTHCGWNSTVEGMSMGVPLLCWPHMRD QFYVRTCICDGWKVGLELKPNEDGIFTRHEIKSKVDELLINGGIRENALKIKRLAQMSLSKGGSSSKNLEQFVAELVL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02100			UDP-Glycosyltransferase superf...		Potri.013G022800 [exp]	0	1
AT1G20780		ATPUB44, SAUL1	ARABIDOPSIS THALIANA PLANT U-B...		Potri.001G024600 [exp]	2.00	0.9002
AT1G06840			Leucine-rich repeat protein ki...		Potri.013G159500 [exp]	3.46	0.8924
AT2G40475		ASG8	ALTERED SEED GERMINATION 8, un...		Potri.016G133200 [exp]	3.46	0.8460
AT1G16560			Per1-like family protein (.1.2...		Potri.012G134300 [exp]	4.12	0.8165
AT5G45380		ATDUR3	DEGRADATION OF UREA 3, solute:...		Potri.003G104000 [exp]	6.48	0.8551
AT4G33360		FLDH	farnesol dehydrogenase, NAD(P)...		Potri.002G127400 [exp]	12.24	0.8070
AT3G19480			D-3-phosphoglycerate dehydroge...		Potri.014G022800 [exp]	17.49	0.7966
AT1G03840	C2H2ZnF	MGP	Magpie, C2H2 and C2HC zinc fin...		Potri.005G027200 [exp]	23.15	0.8267
AT5G61520			Major facilitator superfamily ...		Potri.016G120700 [exp]	23.66	0.7941
					Potri.001G076600 [exp]	24.12	0.8406

Compare expression of checked genes

Potri.013G022800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.