Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08990 560 / 0 PGSIP5 plant glycogenin-like starch initiation protein 5 (.1) AT1G54940 550 / 0 PGSIP4 plant glycogenin-like starch initiation protein 4 (.1) AT4G33330 467 / 5e-159 PGSIP3, GUX2 glucuronic acid substitution of xylan 2, plant glycogenin-like starch initiation protein 3 (.1.2) AT3G18660 417 / 8e-139 PGSIP1, GUX1 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) AT1G77130 407 / 3e-135 PGSIP2, GUX3 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) AT5G18480 119 / 2e-28 PGSIP6 plant glycogenin-like starch initiation protein 6 (.1) AT4G26250 84 / 1e-17 ATGOLS6 galactinol synthase 6 (.1) AT1G60470 81 / 3e-16 ATGOLS4 galactinol synthase 4 (.1) AT1G56600 75 / 2e-14 ATGOLS2 galactinol synthase 2 (.1) AT1G60450 75 / 2e-14 ATGOLS7 galactinol synthase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G033500 [exp] 924 / 0 AT1G08990 555 / 0.0 plant glycogenin-like starch initiation protein 5 (.1) Potri.014G029900 [exp] 493 / 3e-169 AT4G33330 791 / 0.0 glucuronic acid substitution of xylan 2, plant glycogenin-like starch initiation protein 3 (.1.2) Potri.007G107200 [exp] 414 / 1e-137 AT3G18660 884 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) Potri.005G061600 [exp] 409 / 4e-136 AT3G18660 863 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) Potri.005G187900 [exp] 399 / 7e-132 AT1G77130 803 / 0.0 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) Potri.013G049100 [exp] 108 / 1e-24 AT5G18480 661 / 0.0 plant glycogenin-like starch initiation protein 6 (.1) Potri.010G150400 [exp] 78 / 1e-15 AT2G47180 519 / 0.0 galactinol synthase 1 (.1) Potri.008G189400 [exp] 77 / 6e-15 AT1G60470 545 / 0.0 galactinol synthase 4 (.1) Potri.010G042000 [exp] 75 / 2e-14 AT1G60470 534 / 0.0 galactinol synthase 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031507 [exp] 580 / 0 AT1G54940 542 / 0.0 plant glycogenin-like starch initiation protein 4 (.1) Lus10029932 [exp] 564 / 0 AT1G54940 527 / 0.0 plant glycogenin-like starch initiation protein 4 (.1) Lus10021731 [exp] 485 / 1e-165 AT4G33330 803 / 0.0 glucuronic acid substitution of xylan 2, plant glycogenin-like starch initiation protein 3 (.1.2) Lus10042658 [exp] 478 / 6e-163 AT4G33330 801 / 0.0 glucuronic acid substitution of xylan 2, plant glycogenin-like starch initiation protein 3 (.1.2) Lus10018922 [exp] 419 / 4e-139 AT1G77130 847 / 0.0 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) Lus10020890 [exp] 415 / 3e-138 AT3G18660 828 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) Lus10028623 [exp] 414 / 4e-137 AT1G77130 830 / 0.0 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) Lus10033485 [exp] 330 / 8e-106 AT3G18660 677 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) Lus10027949 [exp] 108 / 6e-25 AT5G18480 635 / 0.0 plant glycogenin-like starch initiation protein 6 (.1) Lus10000817 [exp] 99 / 2e-23 AT5G18480 329 / 2e-111 plant glycogenin-like starch initiation protein 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF01501 [poplar] [flax] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Potri.013G022900.2 pacid=42812349 polypeptide=Potri.013G022900.2.p locus=Potri.013G022900 ID=Potri.013G022900.2.v4.1 annot-version=v4.1 ATGGCCTCTTCTAAGCCCCAAAGTTCGTGTCAAAAACTCTTCATCACCTCCCTCTTATTCCTCTCTTTATCCCTCATGTTCCTCGTCTTCTCTTTCAAGC CAAAACCTGGCCATGCGCTTGATCACCACCCTCAAACAGCAGCCCGTTACATTAAGAAACCCTTATCAATCAATACACAAAAATCATGGTTCGATGGCCT TATCGAGAAGAAAACCGATAGCGAACCGATCAAGATTGGCTTGGTTAATGTTGATGATCACGTCAAGCATGCATATGATCGTATGCATGGACAAGTAGAG ACTGTTAGTGTAGATTTCAGGCCTGTATCCAAGGAGCTAAAATGGGAGAGTTTTTTCCCAGAGTGGATCGATGAAGACGCCAGGTGGCACCAACCGTCGT GCCCGGAGGTCCCAATGCCTAGGCTAGACGATTACCGTGACCTAGATGTTATCCTGGCCAGGGTTCCTTGTGGCAGCGGATCAGAGAAGCAAGGGATTAG GGATGTGTTTAGGTTGCAAGTGAACTTGGTGGTGGCTAACCTTGTAGTGGCCAATGGATTGACAAAGGGAGGCGGTGATCGGAAGGTGTATGTTGTTTTC ATGGGGTCTTGTGGACCCATGCAAGAAATATTCAGGTGTGATGATTTGATGACTCGTTTAGGAGATTATTGGGTGTACAAGCCTGAGTTGAGGAGACTTC GACAGAAGGTGCAAATGCCTGTTGGATCATGCCAGATTGCTCCTCTTGGTAGATTATTGACAGGAAGCCAAGGAATTCAGAGACATTCCATGGCACAATA TTCAAAAGCAAGAAAACCCATTGACAACATCTTGTATCATCAAAGGGTCGCCTATGCAACAGTAATCCATTCCTCAGAAGCTTATGTCTGTGGAGCAATT GCTTTGGCTCAAAGTATAATACAAAACAACTCTACTAACGACCTCGTCCTCCTCCATGATTCATCATTAAGTCCAGAGTCCCTCTGTGGTCTTAGAGCCG CCGGGTGGAAGACGAAGCTTATCCAACCTATCCGAAGCCCTTTTGCTCGAAAAGACTCGTACAACGAATGGAACTACAGCAAACTTCGACTTTGGCAACT CACAGATTATGACAAAGTTGTTTTCATAGATGCTGACCTTATAGTCCTCAAGAATATCGACAAGTTCTTTGCTTATCCGCAATTATCAGCAGCTCCGAAT GACAAGGTGCTATTCAACTCGGGGATCATGGTGATTGAGCCGTCGACGTGCTTGTTTGAAGACATGATGTCAAAGAGAAATAAGTTGCTTTCATACAATG GAGGTGATCAAGGGTTTCTCAATGAAGCCTTCACATGGTGGCATCGGTTGCCTACGAGGCTGAATTATCTCAAGATCTTCAAGAACCAAGGAAACCCAGA TCATGAAATGCAGAAGGGTCCCTACACCATCCATTTCTTGGGATTAAAGCCATGGGCATGCTACAAAGATTATGATTGTAATTGGGACATGGTGGATCGC CATATTTTTGCCAGCGACTCCGCTCACAAGAGATGGTGGCAGGTTTATGATGCCATGCCAAAGAAATTGCAGCAATATTGTGGACTCACAAAGCATATGG ATGCAAGGATAAGGAAATGGCGAGGGAAGGCTAAGAATGCGAGCTTGCCAGATGGTCACTGGAAGATTAATGTTAAAGATCCCAGACAATACCATCTTAA TGATTAA
AA sequence Show only first row Show all	>Potri.013G022900.2 pacid=42812349 polypeptide=Potri.013G022900.2.p locus=Potri.013G022900 ID=Potri.013G022900.2.v4.1 annot-version=v4.1 MASSKPQSSCQKLFITSLLFLSLSLMFLVFSFKPKPGHALDHHPQTAARYIKKPLSINTQKSWFDGLIEKKTDSEPIKIGLVNVDDHVKHAYDRMHGQVE TVSVDFRPVSKELKWESFFPEWIDEDARWHQPSCPEVPMPRLDDYRDLDVILARVPCGSGSEKQGIRDVFRLQVNLVVANLVVANGLTKGGGDRKVYVVF MGSCGPMQEIFRCDDLMTRLGDYWVYKPELRRLRQKVQMPVGSCQIAPLGRLLTGSQGIQRHSMAQYSKARKPIDNILYHQRVAYATVIHSSEAYVCGAI ALAQSIIQNNSTNDLVLLHDSSLSPESLCGLRAAGWKTKLIQPIRSPFARKDSYNEWNYSKLRLWQLTDYDKVVFIDADLIVLKNIDKFFAYPQLSAAPN DKVLFNSGIMVIEPSTCLFEDMMSKRNKLLSYNGGDQGFLNEAFTWWHRLPTRLNYLKIFKNQGNPDHEMQKGPYTIHFLGLKPWACYKDYDCNWDMVDR HIFASDSAHKRWWQVYDAMPKKLQQYCGLTKHMDARIRKWRGKAKNASLPDGHWKINVKDPRQYHLND

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G08990		PGSIP5	plant glycogenin-like starch i...		Potri.013G022900 [exp]	0	1
AT1G67710	GARP	ARR11	response regulator 11 (.1)		Potri.010G053100 [exp]	8.24	0.7754
AT5G09220		AAP2	amino acid permease 2 (.1)		Potri.007G100100 [exp]	18.38	0.7374
AT1G08320	bZIP	TGA9, bZIP21	TGACG \(TGA\) motif-binding pr...		Potri.009G164300 [exp]	20.00	0.7441
AT2G44990		MAX3, CCD7, ATC...	carotenoid cleavage dioxygenas...		Potri.014G056800 [exp]	22.91	0.7255
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Potri.006G023600 [exp]	24.67	0.7751
AT4G25850		ORP4B	OSBP(oxysterol binding protein...		Potri.018G143600 [exp]	32.61	0.7618
AT1G63440		HMA5	heavy metal atpase 5 (.1)		Potri.001G019100 [exp]	34.07	0.6947
AT5G14420		RGLG2	RING domain ligase2 (.1.2.3.4)		Potri.008G183600 [exp]	38.57	0.7407
AT5G27380		GSHB, GSH2	glutathione synthetase 2 (.1)		Potri.005G038100 [exp]	40.24	0.6531
AT4G27290			S-locus lectin protein kinase ...		Potri.001G411400 [exp]	42.35	0.6754

Compare expression of checked genes

Potri.013G022900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.