Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05327 193 / 1e-62 Cyclin family protein (.1) AT3G63120 161 / 5e-50 CYCP1;1 cyclin p1;1 (.1) AT2G44740 154 / 2e-47 CYCP4;1 cyclin p4;1 (.1) AT5G07450 151 / 4e-46 CYCP4;3 cyclin p4;3 (.1) AT3G21870 145 / 8e-44 CYCP2;1 cyclin p2;1 (.1) AT5G61650 142 / 2e-42 CYCP4;2 CYCLIN P4;2 (.1) AT3G60550 135 / 7e-40 CYCP3;2 cyclin p3;2 (.1) AT2G45080 135 / 9e-40 CYCP3;1 cyclin p3;1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G033600 [exp] 344 / 2e-122 AT3G05327 184 / 5e-59 Cyclin family protein (.1) Potri.005G209800 [exp] 227 / 8e-76 AT3G63120 223 / 7e-74 cyclin p1;1 (.1) Potri.002G052800 [exp] 224 / 2e-74 AT3G63120 219 / 1e-71 cyclin p1;1 (.1) Potri.007G121500 [exp] 170 / 2e-53 AT3G21870 228 / 5e-76 cyclin p2;1 (.1) Potri.014G050400 [exp] 159 / 2e-49 AT2G44740 285 / 8e-99 cyclin p4;1 (.1) Potri.012G114600 [exp] 157 / 4e-48 AT2G44740 277 / 2e-95 cyclin p4;1 (.1) Potri.015G112140 [exp] 154 / 2e-47 AT2G44740 274 / 1e-94 cyclin p4;1 (.1) Potri.002G143400 [exp] 146 / 5e-44 AT2G45080 324 / 1e-113 cyclin p3;1 (.1) Potri.014G066400 [exp] 144 / 3e-43 AT3G60550 343 / 3e-121 cyclin p3;2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022038 [exp] 212 / 1e-69 AT3G63120 197 / 8e-64 cyclin p1;1 (.1) Lus10042582 [exp] 212 / 1e-69 AT3G63120 191 / 2e-61 cyclin p1;1 (.1) Lus10029933 [exp] 208 / 2e-68 AT3G05327 172 / 3e-54 Cyclin family protein (.1) Lus10004475 [exp] 207 / 5e-68 AT3G05327 171 / 1e-53 Cyclin family protein (.1) Lus10039697 [exp] 154 / 6e-47 AT3G21870 236 / 3e-79 cyclin p2;1 (.1) Lus10027148 [exp] 155 / 7e-47 AT3G21870 233 / 6e-77 cyclin p2;1 (.1) Lus10032505 [exp] 148 / 2e-44 AT2G44740 228 / 7e-76 cyclin p4;1 (.1) Lus10043003 [exp] 147 / 6e-44 AT2G44740 227 / 2e-75 cyclin p4;1 (.1) Lus10042873 [exp] 144 / 7e-43 AT3G60550 300 / 8e-104 cyclin p3;2 (.1) Lus10028174 [exp] 132 / 8e-39 AT2G45080 249 / 1e-84 cyclin p3;1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [poplar] [flax] Cyclin PF00134 [poplar] [flax] Cyclin_N Cyclin, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.013G023000.3 pacid=42811156 polypeptide=Potri.013G023000.3.p locus=Potri.013G023000 ID=Potri.013G023000.3.v4.1 annot-version=v4.1 ATGGCTGCTGAATCAGAAACTTTCATGGCTTTGGGTCTGTTAGATGAATCCAGTAGAGGAGTTTCGGGAACTCCACGGGTGCTGGTGCTTATTGCATCTG TTCTCGAGAAATCCCTTCAAAATAACGAAAAGCTGTTAACTACGTCAAGAAGAAAGGATGCTATTACCATCTTCCATGGCTCAAGATCTCCCACCTTGAG CATTAGACAGTACATCGAACGCGTATTCAAGTACTCGAGGTGCAGCACTTCTTGCTTTGTTGTTGCCTATATATACATCAACAAGTTCCTTCAGCAAACG GATGCCTATCTTACCTCCCTGAATGCACACCGTCTTCTGATCACAAGCATCATGGTAGCTGCAAAGTTCTTGGATGATGATTGTTATGACAATGCCTATT ATGCCAGGATTGGAGGTGTAAGCACTGCAGAAATGAATAGAATGGAGATGAAATTCTTGTTCAATTTGGATTTTAGGCTCCATGTTACAGCTGAAGTATT CATGAACTGCTGCTTGAAACTGGAAAATGAAAGTGGGAAGTACCAGAATGGCCAGGCCGGTCCAAGCTTGTGGCCTCGAAGAAGGCCAGCAAGACAAAGA TGA
AA sequence Show only first row Show all	>Potri.013G023000.3 pacid=42811156 polypeptide=Potri.013G023000.3.p locus=Potri.013G023000 ID=Potri.013G023000.3.v4.1 annot-version=v4.1 MAAESETFMALGLLDESSRGVSGTPRVLVLIASVLEKSLQNNEKLLTTSRRKDAITIFHGSRSPTLSIRQYIERVFKYSRCSTSCFVVAYIYINKFLQQT DAYLTSLNAHRLLITSIMVAAKFLDDDCYDNAYYARIGGVSTAEMNRMEMKFLFNLDFRLHVTAEVFMNCCLKLENESGKYQNGQAGPSLWPRRRPARQR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G05327			Cyclin family protein (.1)		Potri.013G023000 [exp]	0	1
AT5G49890		ATCLC-C, CLC-C	chloride channel C (.1)		Potri.018G138100 [exp]	3.16	0.8966
AT5G05280			RING/U-box superfamily protein...		Potri.001G159300 [exp]	10.00	0.8433
AT1G76800			Vacuolar iron transporter (VIT...		Potri.005G190800 [exp]	12.16	0.9119
AT1G15670			Galactose oxidase/kelch repeat...		Potri.006G196900 [exp]	12.64	0.8843
AT1G72770		HAB1	HYPERSENSITIVE TO ABA1, homolo...		Potri.006G224600 [exp]	16.58	0.8117
AT1G11300			protein serine/threonine kinas...		Potri.004G027533 [exp]	22.29	0.8753
AT1G10155		ATPP2-A10	phloem protein 2-A10 (.1)		Potri.012G120160 [exp]	22.44	0.8846
AT2G44830			Protein kinase superfamily pro...		Potri.014G047500 [exp]	22.51	0.8695
					Potri.002G120651 [exp]	23.45	0.8522
AT3G18430			Calcium-binding EF-hand family...		Potri.003G030300 [exp]	26.26	0.8532

Compare expression of checked genes

Potri.013G023000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.