Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27540 932 / 0 MIRO1, EMB2473 embryo defective 2473, MIRO-related GTP-ase 1 (.1.2) AT3G63150 781 / 0 ATCBG, MIRO2 CALCIUM BINDING GTP-ASE, MIRO-related GTP-ase 2 (.1) AT3G05310 707 / 0 MIRO3 MIRO-related GTP-ase 3 (.1) AT4G35020 72 / 4e-14 ROP6, ARAC3, RHO1PS, ATROP6 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) AT2G44690 68 / 7e-13 ARAC9, AtROP8, ROP8 RHO-RELATED PROTEIN FROM PLANTS 8, Arabidopsis RAC-like 9 (.1) AT1G20090 66 / 3e-12 ROP2, ARAC4, ATROP2, ATRAC4 Arabidopsis RAC-like 4, RHO-related protein from plants 2 (.1) AT4G35950 66 / 3e-12 ATRAC6, ATROP5, ARAC6, RAC2, AtROP7 RAC-like 2, RHO-RELATED PROTEIN FROM PLANTS 5, RAC-like 6 (.1) AT3G51300 66 / 4e-12 ATRAC11, ROP1, ARAC11, ROP1AT, AtROP1 ARABIDOPSIS THALIANA RHO-RELATED PROTEIN FROM PLANTS 1, Arabidopsis RAC-like 11, RHO-related protein from plants 1 (.1) AT1G75840 66 / 6e-12 ATROP4, ATGP3, AT1G75840.1, ARAC5 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1) AT2G17800 64 / 1e-11 ARAC1, ATGP2, ATRAC1, ROP3, AtROP3 RHO-RELATED GTPASES FROM PLANTS 3, Arabidopsis RAC-like 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G033700 [exp] 1172 / 0 AT5G27540 937 / 0.0 embryo defective 2473, MIRO-related GTP-ase 1 (.1.2) Potri.005G209000 [exp] 848 / 0 AT3G63150 847 / 0.0 CALCIUM BINDING GTP-ASE, MIRO-related GTP-ase 2 (.1) Potri.009G134600 [exp] 69 / 2e-13 AT1G75840 353 / 5e-126 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1) Potri.004G174900 [exp] 67 / 1e-12 AT4G35020 360 / 8e-129 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Potri.014G051800 [exp] 67 / 2e-12 AT4G35020 324 / 3e-114 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Potri.005G110700 [exp] 65 / 1e-11 AT2G17800 365 / 8e-131 RHO-RELATED GTPASES FROM PLANTS 3, Arabidopsis RAC-like 1 (.1.2) Potri.007G061500 [exp] 65 / 1e-11 AT2G17800 365 / 8e-131 RHO-RELATED GTPASES FROM PLANTS 3, Arabidopsis RAC-like 1 (.1.2) Potri.015G073000 [exp] 65 / 2e-11 AT5G62880 354 / 7e-126 RHO-RELATED PROTEIN FROM PLANTS 11, ARABIDOPSIS THALIANA RAC-LIKE 10, RAC-like 10 (.1) Potri.005G242000 [exp] 64 / 2e-11 AT1G75840 359 / 2e-128 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029934 [exp] 1063 / 0 AT5G27540 971 / 0.0 embryo defective 2473, MIRO-related GTP-ase 1 (.1.2) Lus10004474 [exp] 1059 / 0 AT5G27540 970 / 0.0 embryo defective 2473, MIRO-related GTP-ase 1 (.1.2) Lus10031508 [exp] 1037 / 0 AT5G27540 951 / 0.0 embryo defective 2473, MIRO-related GTP-ase 1 (.1.2) Lus10015186 [exp] 1021 / 0 AT5G27540 932 / 0.0 embryo defective 2473, MIRO-related GTP-ase 1 (.1.2) Lus10022034 [exp] 827 / 0 AT3G63150 891 / 0.0 CALCIUM BINDING GTP-ASE, MIRO-related GTP-ase 2 (.1) Lus10042575 [exp] 820 / 0 AT3G63150 892 / 0.0 CALCIUM BINDING GTP-ASE, MIRO-related GTP-ase 2 (.1) Lus10034538 [exp] 71 / 1e-13 AT4G35020 359 / 2e-128 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Lus10025959 [exp] 68 / 1e-12 AT2G17800 355 / 2e-126 RHO-RELATED GTPASES FROM PLANTS 3, Arabidopsis RAC-like 1 (.1.2) Lus10033131 [exp] 67 / 3e-12 AT4G35020 361 / 4e-129 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Lus10014258 [exp] 67 / 3e-12 AT3G51300 394 / 1e-141 ARABIDOPSIS THALIANA RHO-RELATED PROTEIN FROM PLANTS 1, Arabidopsis RAC-like 11, RHO-related protein from plants 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00071 [poplar] [flax] Ras Ras family CL0023 [poplar] [flax] PF08355 [poplar] [flax] EF_assoc_1 EF hand associated CL0220 [poplar] [flax] EF_hand PF08356 [poplar] [flax] EF_assoc_2 EF hand associated
Representative CDS sequence Show only first row Show all	>Potri.013G023100.8 pacid=42811911 polypeptide=Potri.013G023100.8.p locus=Potri.013G023100 ID=Potri.013G023100.8.v4.1 annot-version=v4.1 ATGGCGAGAGCAGCTGCCGCAGCCAATCCAGGAGTTAAAAGTGGTGTGAGAATCGTGGTGGCCGGAGACAGAGGCACCGGCAAGTCTAGTTTGATAGTCA CTGCTATCTCCGATACTTTCCCGTCCAGTATCCCGCCGGTTCTTCCACCTACTCGGATGCCCGATGATTTTTACCCTGACCGCGTTCCAATCACCATCAT TGATACCTCATCTAAAGTAGAGGATGCTGGTAAAGTTGCTGAAGAATTGAAGCGAGCTGATGCAGTTGTTCTTACATATGCATGTGATAGGCCGGAAACT CTTGACCGATTGAGTACCTTTTGGCTTCCTGAGCTTCGTCAATTAGAGGTTAAGGTACCAGTTATAGTGGTGGGTTGTAAGTTGGATTTAAGAGATGAGA ACCAGCAGGTGAGCTTGGAGCAAGTAATGTCACCAATAATGCAACAATTCCGAGAGATTGAAACTTGTATTGAGTGCTCAGCATTCAAACATATTCAGAT TCCTGAGGTTTTCTACTATGCTCAAAAGGCAGTACTTCACCCAACTGGTCCATTATTTGATCAGGAATCACAAACTTTGAAGCCCAGGTGTGTTAGAGCC TTGAAGCGTATATTCATTCTTTGCGATCTTGATAGAGATGGTGCCCTTAGTGATGCAGAATTAAATGAATTTCAGGTCAAGTGTTTCAATGCTCCGCTAC AACCTTCCGAGATAGTCGGTGTTAAGAAGGTTGTGGAAGAAAAGTTGCCTGGTGGAGGAGTCAATGATAGGGGAGTCAATGAACGTGGCCTTACACTGAC AGGATTCCTCTTTCTCCATGCATTATTCATAGAAAAAGGGCGCCTTGAGACAACTTGGACTGTGCTAAGGAAATTTGGGTACAACAATGATATCAAACTT ACTGATGAACTAATTCCCTCATTCAAACGTGCTCCTGATCAGAGTGCAGAACTCACAAGTGAAGCTGTCGAGTACTTGAGGAATATCTATGAGTTGTTTG ACAGTGATGGTGATAACAATTTGCGACCAGCAGAACTAGAGGATATTTTCTCTACTGCACCAGAAAGCCCGTGGGATGAACCTCCATATAAAGATGCTGC TGAGAAAACTGCATTGAGTGGGCTATCAGTTAATGCTTTTTTGTCAGAGTGGGCCCTTATGACTCTTCTAGATCCATCCAGAGCTGTAGAGAATCTGATC TACATTGGATACTCTGGTGATCCTACTGCTGCTGTTCGCTTGACAAGGAGAAGACGGTTAGATCGCAAGAAGCAACAGTCAGACAGAAATGTTTTCCATT GCTTTGTCTTTGGACCAAAAAAATCTGGAAAGTCTGCATTAGTGAATTCTTTTATTGGAAGACCGTTTTATGATAATTATGCTCCAACCACTGAGGAAAG CTACGCGGTTCATGTTGTTGATCTACCTGGTGGAATCAAGAAAACCCTTGTGTTGAGAGAGATTCCTGAGGATGGGGTTAAGAAACTATTATTGAACAAG GAGTCTTTGGCACCATGTGACATAGCAGTGTTTGTTTATGACAGCTCTGATCAGTCCTCGTGGAAGAGAGCAACTGAATTGCTTGTGGAAGTTGCTGGCC ATGGTGAGGATACTGGATATGAGGTGCCTTGCCTAATTGTTGCAGCTAAAGATGATCTGAACTCTTTTCCAATGGCAATACAGGAATCTACCAGGGTTAG TCAGGATATGGGAATAGAGGCTCCTATCCCTATCAGCTCAAAGATGGGCGACACCAATAATGTGTTTCGTAGGATTGTAACTGCAGCCGAGCACCCACAT TTGAGCATTCCTGAAACTGAAGCAGGGAGAAGTCGCAAGCAATACAATCGACTCGTCAACCGCTCTCTTATGTTTGTTTCGGTTGGAGCTACGGTGGCCA TTGTTGGGCTAGCAGCGTACCGAGTCTATGCTGCAAGAAGGAACTCATCTGGTTGA
AA sequence Show only first row Show all	>Potri.013G023100.8 pacid=42811911 polypeptide=Potri.013G023100.8.p locus=Potri.013G023100 ID=Potri.013G023100.8.v4.1 annot-version=v4.1 MARAAAAANPGVKSGVRIVVAGDRGTGKSSLIVTAISDTFPSSIPPVLPPTRMPDDFYPDRVPITIIDTSSKVEDAGKVAEELKRADAVVLTYACDRPET LDRLSTFWLPELRQLEVKVPVIVVGCKLDLRDENQQVSLEQVMSPIMQQFREIETCIECSAFKHIQIPEVFYYAQKAVLHPTGPLFDQESQTLKPRCVRA LKRIFILCDLDRDGALSDAELNEFQVKCFNAPLQPSEIVGVKKVVEEKLPGGGVNDRGVNERGLTLTGFLFLHALFIEKGRLETTWTVLRKFGYNNDIKL TDELIPSFKRAPDQSAELTSEAVEYLRNIYELFDSDGDNNLRPAELEDIFSTAPESPWDEPPYKDAAEKTALSGLSVNAFLSEWALMTLLDPSRAVENLI YIGYSGDPTAAVRLTRRRRLDRKKQQSDRNVFHCFVFGPKKSGKSALVNSFIGRPFYDNYAPTTEESYAVHVVDLPGGIKKTLVLREIPEDGVKKLLLNK ESLAPCDIAVFVYDSSDQSSWKRATELLVEVAGHGEDTGYEVPCLIVAAKDDLNSFPMAIQESTRVSQDMGIEAPIPISSKMGDTNNVFRRIVTAAEHPH LSIPETEAGRSRKQYNRLVNRSLMFVSVGATVAIVGLAAYRVYAARRNSSG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G27540		MIRO1, EMB2473	embryo defective 2473, MIRO-re...		Potri.013G023100 [exp]	0	1
AT4G00090			Transducin/WD40 repeat-like su...		Potri.014G069400 [exp]	1.73	0.7904
AT3G07660			Kinase-related protein of unkn...		Potri.001G370900 [exp]	4.00	0.7256
AT4G38070	bHLH		basic helix-loop-helix (bHLH) ...		Potri.007G010500 [exp]	5.19	0.7633
AT1G11900			Tetratricopeptide repeat (TPR)...		Potri.009G067400 [exp]	5.29	0.7716
AT5G57990		UBP23	ubiquitin-specific protease 23...		Potri.006G185200 [exp]	7.74	0.7458	UBP23.3
AT5G07950			unknown protein		Potri.018G051500 [exp]	9.16	0.7337
AT5G19130			GPI transamidase component fam...		Potri.001G345200 [exp]	10.39	0.7218
AT2G24240			BTB/POZ domain with WD40/YVTN ...		Potri.006G185300 [exp]	15.29	0.6678
AT2G24830	C3HZnF		zinc finger (CCCH-type) family...		Potri.018G016200 [exp]	16.12	0.7028
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.005G047100 [exp]	21.54	0.6632

Compare expression of checked genes

Potri.013G023100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.