Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05290 449 / 6e-160 AtPNC1, PNC1 peroxisomal adenine nucleotide carrier 1 (.1) AT5G27520 436 / 1e-154 AtPNC2, PNC2 peroxisomal adenine nucleotide carrier 2 (.1) AT2G39970 93 / 2e-21 PXN, PMP38, APEM3 peroxisomal NAD carrier, peroxisomal membrane protein 38, ABERRANT PEROXISOME MORPHOLOGY 3, Mitochondrial substrate carrier family protein (.1) AT5G66380 79 / 1e-16 ATFOLT1 folate transporter 1 (.1) AT1G34065 60 / 5e-10 SAMC2 S-adenosylmethionine carrier 2 (.1) AT2G47490 60 / 6e-10 ATNDT1 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1) AT5G51050 54 / 7e-08 APC2 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) AT5G42130 53 / 1e-07 AtMfl1 MitoFerrinLike1, Mitochondrial substrate carrier family protein (.1) AT4G26180 48 / 4e-06 Mitochondrial substrate carrier family protein (.1) AT4G32400 44 / 0.0001 EMB42, EMB104, ATBT1, SHS1 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G033800 [exp] 518 / 0 AT3G05290 433 / 1e-153 peroxisomal adenine nucleotide carrier 1 (.1) Potri.010G092100 [exp] 432 / 2e-153 AT5G27520 449 / 6e-160 peroxisomal adenine nucleotide carrier 2 (.1) Potri.010G192600 [exp] 96 / 3e-22 AT2G39970 460 / 7e-164 peroxisomal NAD carrier, peroxisomal membrane protein 38, ABERRANT PEROXISOME MORPHOLOGY 3, Mitochondrial substrate carrier family protein (.1) Potri.008G064800 [exp] 84 / 3e-18 AT2G39970 393 / 2e-137 peroxisomal NAD carrier, peroxisomal membrane protein 38, ABERRANT PEROXISOME MORPHOLOGY 3, Mitochondrial substrate carrier family protein (.1) Potri.002G000200 [exp] 81 / 7e-17 AT2G39970 389 / 3e-135 peroxisomal NAD carrier, peroxisomal membrane protein 38, ABERRANT PEROXISOME MORPHOLOGY 3, Mitochondrial substrate carrier family protein (.1) Potri.007G019000 [exp] 74 / 8e-15 AT5G66380 463 / 8e-166 folate transporter 1 (.1) Potri.010G121500 [exp] 69 / 7e-13 AT1G25380 395 / 2e-137 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) Potri.014G125600 [exp] 66 / 4e-12 AT2G47490 448 / 1e-159 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1) Potri.002G200900 [exp] 59 / 1e-09 AT2G47490 471 / 1e-168 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015188 [exp] 461 / 2e-164 AT3G05290 480 / 4e-172 peroxisomal adenine nucleotide carrier 1 (.1) Lus10031510 [exp] 456 / 1e-162 AT3G05290 474 / 8e-170 peroxisomal adenine nucleotide carrier 1 (.1) Lus10010517 [exp] 420 / 1e-148 AT3G05290 437 / 2e-155 peroxisomal adenine nucleotide carrier 1 (.1) Lus10034055 [exp] 396 / 7e-139 AT3G05290 427 / 3e-151 peroxisomal adenine nucleotide carrier 1 (.1) Lus10014839 [exp] 97 / 8e-23 AT2G39970 481 / 5e-172 peroxisomal NAD carrier, peroxisomal membrane protein 38, ABERRANT PEROXISOME MORPHOLOGY 3, Mitochondrial substrate carrier family protein (.1) Lus10009886 [exp] 96 / 3e-22 AT2G39970 484 / 2e-173 peroxisomal NAD carrier, peroxisomal membrane protein 38, ABERRANT PEROXISOME MORPHOLOGY 3, Mitochondrial substrate carrier family protein (.1) Lus10001463 [exp] 69 / 3e-13 AT2G47490 415 / 1e-146 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1) Lus10028339 [exp] 63 / 4e-11 AT5G66380 384 / 2e-135 folate transporter 1 (.1) Lus10034104 [exp] 63 / 7e-11 AT1G25380 414 / 3e-145 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) Lus10029770 [exp] 56 / 2e-08 AT5G42130 478 / 5e-169 MitoFerrinLike1, Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [poplar] [flax] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Potri.013G023200.1 pacid=42812175 polypeptide=Potri.013G023200.1.p locus=Potri.013G023200 ID=Potri.013G023200.1.v4.1 annot-version=v4.1 ATGGGTGTTGATCTTGAATCTTTGTCAGAGGCAACATCAGGCGCTATTGGTTCATTACTAAGCACAACAATTTTGTACCCTCTTGATACGTGTAAGACTA AGTATCAAGCTGAGGCTCGTGATCATGGACAGCAAAAATACAGGAACCTTACTGATGTTTTATGGGAAGCAATATCCACTCGACAAGTTCTTTCACTATA CCAGGGCCTAGGGACGAAAAATCTGCAGTCTTTCTTTTCACAGTTTATCTACTTCTATGGGTATAGCTACTTTAAAAGACTATATCTGGAGAAGAGTGGT TCCAGAAAGATTGGAACGAAAGTTAACTTGTTTATTGCTGCTGCTGCTGGGGCTTGCACTGCCGTTATCACTCAGCCCCTGGATACAGCCTCCTCGAGAA TGCAGACAAGTGCCTTTGGCAAATCGAAAGGACTTTGGGAAACATTGACAGAGGGCAGTTACAGTGGTGCGTTTGATGGCCTTGGCATCTCTCTTTTGCT GACCTCAAACCCCGCAATTCAGTACACGGTATTCGATCAGCTCAAACTAAGACTATTAAAGACAAACCAGAACAACACAGAAAAGACTGCGGTAACCCTT TCTGCCTTCACAGCTTTTGTTCTGGGTGCGCTCTCAAAGAGTATAGCCACCATTCTGACATATCCTGCAATCAGGTGTAAGGTGGTGATTCAAGCTGCCG ACTCAGATGACGATGAAGCTAAGAAAGCTCAGCGAAAGTCTAGAAAGACATTGTCTGCTGTCATACGTGCTATATGGAAAAAAGAGGGAATTTTGGGCTT TTTCAAAGGAATGCATGCCCAGATTTTGAAGACTGTACTGAGCTCAGCATTCCTTTTGATGATCAAGGAGAAAATAGCCGCAACCAGTTGGGTTCTTATA CTCGCGATTAGAAGGTATCTATTTCTCACAAGGGGTAAACTAAAAGGTGCCTGA
AA sequence Show only first row Show all	>Potri.013G023200.1 pacid=42812175 polypeptide=Potri.013G023200.1.p locus=Potri.013G023200 ID=Potri.013G023200.1.v4.1 annot-version=v4.1 MGVDLESLSEATSGAIGSLLSTTILYPLDTCKTKYQAEARDHGQQKYRNLTDVLWEAISTRQVLSLYQGLGTKNLQSFFSQFIYFYGYSYFKRLYLEKSG SRKIGTKVNLFIAAAAGACTAVITQPLDTASSRMQTSAFGKSKGLWETLTEGSYSGAFDGLGISLLLTSNPAIQYTVFDQLKLRLLKTNQNNTEKTAVTL SAFTAFVLGALSKSIATILTYPAIRCKVVIQAADSDDDEAKKAQRKSRKTLSAVIRAIWKKEGILGFFKGMHAQILKTVLSSAFLLMIKEKIAATSWVLI LAIRRYLFLTRGKLKGA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Potri.013G023200 [exp]	0	1
AT3G27150			Galactose oxidase/kelch repeat...		Potri.001G331500 [exp]	2.00	0.9568
AT3G58750		CSY2	citrate synthase 2 (.1)		Potri.014G141900 [exp]	2.00	0.9462
AT4G28940			Phosphorylase superfamily prot...		Potri.006G161538 [exp]	7.21	0.9546
AT4G36670		AtPMT6, AtPLT6	polyol/monosaccharide transpor...		Potri.007G027900 [exp]	7.34	0.9492
AT5G16010			3-oxo-5-alpha-steroid 4-dehydr...		Potri.010G245200 [exp]	8.12	0.9228
AT4G16600			Nucleotide-diphospho-sugar tra...		Potri.003G076800 [exp]	10.95	0.9201
AT4G25700		BCH1, B1, CHY1,...	BETA CAROTENOID HYDROXYLASE 1,...		Potri.001G100200 [exp]	15.90	0.9370
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Potri.011G061700 [exp]	18.00	0.9262
AT4G27410	NAC	RD26, ANAC072	NAC (No Apical Meristem) domai...		Potri.001G404100 [exp]	20.83	0.9331	Pt-ATNAC3.1
AT4G13420		HAK5, ATHAK5	high affinity K+ transporter 5...		Potri.014G132500 [exp]	21.79	0.9439

Compare expression of checked genes

Potri.013G023200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.