Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54920 342 / 2e-102 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G034100 [exp] 1343 / 0 AT1G54920 332 / 5e-99 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029936 [exp] 433 / 2e-135 AT1G54920 296 / 3e-86 unknown protein Lus10004472 [exp] 405 / 6e-126 AT1G54920 291 / 7e-85 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.013G023600.4 pacid=42811659 polypeptide=Potri.013G023600.4.p locus=Potri.013G023600 ID=Potri.013G023600.4.v4.1 annot-version=v4.1 ATGACGATGGAGAAGAAAGAAGAAATCTTTAGCGACTTCAATTTCGCTCCGTCAAATCACGCTGTTAATTCCAATTCCACCATGATCAACGGCTCAGATT TCACCAATACCAATGATGCTGATGCTGATGATGATTGGGGAGATTTCAATTTTGTCAGCAGCAATTCAAGTGGATTCAGCCACACCTTATCACTGCCCAA AATCTCAACTACCCATTTTGAATTCTCTACCAAAAATCAAAATTCGGCCGAGTCACTGACTCAGCCTGGATCGGCACCGAGTCGAGTTAATAATTCGGCT CAGTGGAAGAAGCCAAATGGAGCTTTGCCTCTTTCGTTGTTTGGAGAAATTGAAGAGGAGGAGGAGGAGGAGGAAGGATCAGGTGCGGGCGAGCCTCCAA AAAATGAAAGTGTTCATTTTTCGAAAAATAAAGAGGGGTCAGGAGGTGTTAATGTGATTGATTTGATAGCTAATTTGTATAAAGAGAAGGAGAGGAATAA TGGGTTCGGATCCGGCTTTAATGGCTCGGATATGAATTGGGAAAATTTGAATGGTAATGGATTGAATGTCAATGGTGTAAATAAGGATGAAATGAATTCC AAGGGGTTGGATTTGGATTTGAAGGAAAATGGGTTGAATTCAAATAAAACCGAGTCGAATTTGGTTAAAAAAGATAAGAATTTCAGTGGAAATGGAGTGG ATTTGGGATTGGTTAATGGTAATGAGCCATTCGATGTTAATGGTGGTGGCGGTGGCGGTGATGATGATGATGATGGGTGGGAATTTAAAGGTGCAGACTC TATAACCGATTCGGAGGTTGATATTTCTAAGGCTAGTGAAATGAAGGCTGAGAATGGGTTGGTGTGTAATGTTAATGGATTAAATTCAAGATGGAATCCT TTAAGCTTGGATTTGAATGGATGGACCTCGCATGTCAATAGAGATGACTCAAGTTGGGATTGGTTGAATACGGGTACGGTTGATGGAAATACAGCACCTG GTAACAGTGATGACTGGGAGTTCAAAGAAACAGGTTCCAGAATGCAGGCTGAAGATGAGAAAGAGAAGGGTGAGCAGATGAAAGCTGAAATCAAGCCAAT ATTGAGTTTTGATGGATCCAATTCAACCTGGAATTCTTTGAGTTTTGATGGATCCAATTCAACCTGGAATTCATTGAGTTTGGATGGACTCAAGAATTCA AACTTAAATGAAGTGAATTCAGATAGAAAACAGATGAATCTGAATTCATCTGATGAAAATGAGGATTTTGATGGCAATGATGAGTGGGAATTCAAGGCAG CAGAATCAGAATCTGGGACTGGTGACAAGAATACTAAGGGTGATGAGAGAAAGGTGGAAAATCCTGAGGGAACCACACATGCACTTGGGTTTGGCAGTGG AGTGATTGGTACTGGTGATTTATTTGGTGCATCACAACAGACCTCCAAAAAATCTACTGGACGGGACTTTGGGTTTGATTTCAGCACCTCTTTGGCTCAA GACACTAAAATGTTCCATACACACACTAAAAATGAGCAGAACGATACCAAAAAAGTCCCTCATTCCTCCCCAGATGATGGTGTTGATTCTGATGAGGAGT CTTGGGAATTTAAAGATGCATTTTCGGAAACTAGATCAAAGGAAAAGGAAGAGCCAAAGGTTGTTGAAGTTTCTGCTGCTGTGGAAGCATTTCCATTTGA TGGTGAAATTAAGGGAAACATGGCCAGGTCAATCAGTCATAAAGGAGCCCTGCCCTTGTCCATTTTTGGTGATGAAGAACAGGATTCCAATGATCCTGTG AGTTATCAAGACATTTCACCTCAGCTGTCCAGTTCGAAGCCAATAGATGGCGTTAAGAGTCCTCATTTAAACATTTCTATCAACGATCTTATATCAAGTT TATACAGTCAAGCTGAGCATGATACTGGTCAAAATCCCAGTGGAAGTGGATTGAGCCCTGCCAATGTTGTAATAGAGTCTAATTTAGCAGGCGATAGTGA TGATTTTGATGACGATTCCTGGGAATTTAAAGATGCCTCTTCAGGGATCAGAGCTGAAGATCAGGCCTCTTTTATTGGTCTTGGAGAGCCTAATACAAAA TATTCCACCAAAATAGAGCTAAATGATTATGTTGATTTTTTTTGCAAATTGAAGGAAGAATTACACTTTCTTGCCCTGTGTCATCTTGATAATCTAAAGA AAGCTCAAAGTGCTGCTAGTGAAGATGCTGAAGTGAAAGCCCTTGTAAAGGAAATACAGAATCTTCATGATGAACTGCAGCAAGATGGTTTGTTTTCTGG TGAAGTTGACACAGGGAATCACTCCCCAAGAAAATTGTGCCTCAATGCATTTGTTGAGGTTTTGCAAGAACCAAAGTTCCAAGTGTTTGAATCAGAATAT CAGTTAACAAGTAAATTGTCATTAGTTGAGAATGATTTGGGATTGACCATGGAACTCCTCAAACATGTGACATCAACAATAAAGATTTTGATGTTGGTAT CAAGGAAGGAGCAATCTAGTTATGTTTCCACTTGGTCTGAAATCCTGTCTGTTTGTGCTCGAGAGCTGAAACATGGTGCCTTAATTTGGACGCAGTCATT ACAAAAAGATGTCCATGATCAAATATTATCTAAACCTCAAGGCAAGAACTATATTGTTGCCCTTGGAGAAATATATAGAGTTGTTGAAGTTATTGGGTCC TCGGCCAGACTTTATAAGCCATGGTTATTAGTGAGCTCTACAAATCCCATGGGCTTGCTCACTCTTCTAAGTGAGTGTTTCACCATATGGTCAAGTTCTG GACTTGAAGAAGCTCTGCAAAGCATTTCTGATCCAGCTGGTCTTTATTATAATGGAGGTCTCACTACATTAATTGAATCGATTAAGCATATTCACGATCT TGATACTCGTACGCTATATAACCATGTTTTCTGTGGACAAGGTCCTATCTGTCAACTGTCAGTTTTAACTGCAGGAATAGTGCCAGGGATGAAAACAGTG GTGTGGAATGGGGAGCACTACTTTCTCACGCTTGCTAATTTGTGGGCAAACTTAGTAAGCTGCAACCCTCCAAATTTGCCACACATACATGTTGGATGA
AA sequence Show only first row Show all	>Potri.013G023600.4 pacid=42811659 polypeptide=Potri.013G023600.4.p locus=Potri.013G023600 ID=Potri.013G023600.4.v4.1 annot-version=v4.1 MTMEKKEEIFSDFNFAPSNHAVNSNSTMINGSDFTNTNDADADDDWGDFNFVSSNSSGFSHTLSLPKISTTHFEFSTKNQNSAESLTQPGSAPSRVNNSA QWKKPNGALPLSLFGEIEEEEEEEEGSGAGEPPKNESVHFSKNKEGSGGVNVIDLIANLYKEKERNNGFGSGFNGSDMNWENLNGNGLNVNGVNKDEMNS KGLDLDLKENGLNSNKTESNLVKKDKNFSGNGVDLGLVNGNEPFDVNGGGGGGDDDDDGWEFKGADSITDSEVDISKASEMKAENGLVCNVNGLNSRWNP LSLDLNGWTSHVNRDDSSWDWLNTGTVDGNTAPGNSDDWEFKETGSRMQAEDEKEKGEQMKAEIKPILSFDGSNSTWNSLSFDGSNSTWNSLSLDGLKNS NLNEVNSDRKQMNLNSSDENEDFDGNDEWEFKAAESESGTGDKNTKGDERKVENPEGTTHALGFGSGVIGTGDLFGASQQTSKKSTGRDFGFDFSTSLAQ DTKMFHTHTKNEQNDTKKVPHSSPDDGVDSDEESWEFKDAFSETRSKEKEEPKVVEVSAAVEAFPFDGEIKGNMARSISHKGALPLSIFGDEEQDSNDPV SYQDISPQLSSSKPIDGVKSPHLNISINDLISSLYSQAEHDTGQNPSGSGLSPANVVIESNLAGDSDDFDDDSWEFKDASSGIRAEDQASFIGLGEPNTK YSTKIELNDYVDFFCKLKEELHFLALCHLDNLKKAQSAASEDAEVKALVKEIQNLHDELQQDGLFSGEVDTGNHSPRKLCLNAFVEVLQEPKFQVFESEY QLTSKLSLVENDLGLTMELLKHVTSTIKILMLVSRKEQSSYVSTWSEILSVCARELKHGALIWTQSLQKDVHDQILSKPQGKNYIVALGEIYRVVEVIGS SARLYKPWLLVSSTNPMGLLTLLSECFTIWSSSGLEEALQSISDPAGLYYNGGLTTLIESIKHIHDLDTRTLYNHVFCGQGPICQLSVLTAGIVPGMKTV VWNGEHYFLTLANLWANLVSCNPPNLPHIHVG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G54920			unknown protein		Potri.013G023600 [exp]	0	1
AT1G61850			phospholipases;galactolipases ...		Potri.004G018700 [exp]	1.73	0.9140
AT3G48860			unknown protein		Potri.015G104600 [exp]	2.64	0.8600
AT1G17720		ATBBETA, ATB BE...	Protein phosphatase 2A, regula...		Potri.018G055001 [exp]	4.47	0.8799
AT2G46180		GC4	golgin candidate 4 (.1)		Potri.014G091300 [exp]	5.47	0.8929
AT5G13390		NEF1	no exine formation 1 (.1)		Potri.001G068900 [exp]	5.74	0.8482
AT2G19950		GC1	golgin candidate 1 (.1.2)		Potri.018G086600 [exp]	6.00	0.9011
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Potri.006G103400 [exp]	7.68	0.8069
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Potri.016G138000 [exp]	8.00	0.8412
AT2G38650		GAUT7, LGT7	LIKE GLYCOSYL TRANSFERASE 7, g...		Potri.016G143966 [exp]	10.24	0.8419
AT3G23340		CKL10	casein kinase I-like 10 (.1)		Potri.008G168100 [exp]	15.74	0.8252	CKI1.3

Compare expression of checked genes

Potri.013G023600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.