Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54870 493 / 1e-177 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G05260 456 / 1e-163 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G06060 106 / 5e-27 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G51680 106 / 7e-27 AtSDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G05530 103 / 4e-26 SDRA, IBR1 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1) AT2G29290 100 / 9e-25 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G24360 100 / 1e-24 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G63380 98 / 7e-24 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G26770 99 / 8e-24 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29350 96 / 4e-23 SAG13 senescence-associated gene 13 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G149201 [exp] 399 / 5e-141 AT1G54870 378 / 3e-132 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.010G092400 [exp] 300 / 4e-103 AT1G54870 301 / 3e-103 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.019G023900 [exp] 184 / 1e-57 AT1G54870 172 / 1e-52 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G050700 [exp] 183 / 1e-57 AT1G54870 182 / 5e-57 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.010G056100 [exp] 118 / 5e-31 AT1G24360 421 / 6e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G178700 [exp] 116 / 2e-30 AT1G24360 385 / 1e-134 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073700 [exp] 114 / 5e-30 AT1G52340 242 / 1e-79 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.011G022500 [exp] 112 / 3e-29 AT4G05530 373 / 5e-132 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1) Potri.012G105700 [exp] 111 / 7e-29 AT2G47140 251 / 9e-84 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029937 [exp] 533 / 0 AT1G54870 503 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004471 [exp] 528 / 0 AT1G54870 501 / 5e-180 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021931 [exp] 390 / 2e-137 AT3G05260 364 / 3e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10033745 [exp] 387 / 2e-136 AT1G54870 365 / 8e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10036980 [exp] 120 / 1e-31 AT1G24360 437 / 3e-155 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10019777 [exp] 111 / 1e-28 AT1G52340 391 / 3e-138 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10020019 [exp] 107 / 3e-27 AT4G05530 395 / 5e-141 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1) Lus10015821 [exp] 110 / 5e-27 AT1G24360 427 / 5e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10022756 [exp] 107 / 8e-27 AT3G51680 397 / 2e-139 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016354 [exp] 106 / 8e-27 AT1G52340 389 / 4e-137 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF08659 [poplar] [flax] KR KR domain
Representative CDS sequence Show only first row Show all	>Potri.013G023900.2 pacid=42811246 polypeptide=Potri.013G023900.2.p locus=Potri.013G023900 ID=Potri.013G023900.2.v4.1 annot-version=v4.1 ATGGCTTCAGGTGGGCAAAAGTTTCCTCCACAAAAGCAGAATAGCCAGCCTGGTAAAGAGCATGTTATGGACCCAACTCCACAGTACACCAACCCTGATT ATAAGCCCTCTAATAAGCTCCAGGGAAAGGTGGCAGTGGTGACTGGTGGAGATTCTGGCATAGGAAGAGCTGTGTGCCGTAGTTTCGTGATTGAAGGAGC AACCGTGGCCTTCACATATGTTAAGGCTCAAGAGGATAAGGACGCTGATGATACTCTTCAGATGCTAAAGAAGCATAAGACTGCTGATGCTAAGGATCCT ATTGCAATACCTGTGGATTTGGGGTTTGATGAGAATTGCAAGAGAGTGGTTGATGAGGTGGTAAATGCGTATGGTCGGATTGATATTTTGGTTAACAATG CAGCTGAGCAGTATGAGTGTAGCTCTGTGGAGGAGATTGATGAGCAGAGGCTTGAAAAGGTGTTTAGGACTAATATCTTCTCCTACTTCTTCATGACCAG GCATGCCTTGAAACACATGAAAGAAGGCAGCTCTATAATCAACACAACATCAGTTAATGCATATATGGGAAACTCCCAGTTGCTTGACTACACATCAACC AAAGGTGCAATTGTGGCTTTCATTAGAGGACTAGCACTCCAGCTAGTTAGCAGAGGCATAAGGGTCAATGGCGTCGCGCCTGGACCCATTTGGACTCCAT TGATACCGGCATCATTCAAAGAGGAGGAGGTTGCGAATTTTGGAAAACAAGTGCCTATGCAAAGAGCTGGCCAGCCAGCTGAGGTTGCCCCTAGCTATGT GTTCCTCGCTTGTAACCACTGCTCTTCTTACATTACTGGCCAAGTCCTTCACCCTAATGGTGGTGTAATCGTGAATGGTTAA
AA sequence Show only first row Show all	>Potri.013G023900.2 pacid=42811246 polypeptide=Potri.013G023900.2.p locus=Potri.013G023900 ID=Potri.013G023900.2.v4.1 annot-version=v4.1 MASGGQKFPPQKQNSQPGKEHVMDPTPQYTNPDYKPSNKLQGKVAVVTGGDSGIGRAVCRSFVIEGATVAFTYVKAQEDKDADDTLQMLKKHKTADAKDP IAIPVDLGFDENCKRVVDEVVNAYGRIDILVNNAAEQYECSSVEEIDEQRLEKVFRTNIFSYFFMTRHALKHMKEGSSIINTTSVNAYMGNSQLLDYTST KGAIVAFIRGLALQLVSRGIRVNGVAPGPIWTPLIPASFKEEEVANFGKQVPMQRAGQPAEVAPSYVFLACNHCSSYITGQVLHPNGGVIVNG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G54870			NAD(P)-binding Rossmann-fold s...		Potri.013G023900 [exp]	0	1
					Potri.003G195000 [exp]	1.41	0.8421
					Potri.018G100232 [exp]	5.09	0.8223
					Potri.019G056601 [exp]	7.74	0.7841
AT4G31730		ATGDU1, GDU1	glutamine dumper 1 (.1)		Potri.017G107400 [exp]	15.00	0.8113
AT3G47570			Leucine-rich repeat protein ki...		Potri.006G099100 [exp]	28.24	0.7669
					Potri.014G065300 [exp]	28.84	0.8054
					Potri.018G100166 [exp]	29.66	0.7782
AT2G32235			unknown protein		Potri.018G147100 [exp]	32.07	0.7936
AT5G01860	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Potri.006G063800 [exp]	39.49	0.7889
					Potri.005G010551 [exp]	45.98	0.7856

Compare expression of checked genes

Potri.013G023900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.