Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27450 486 / 2e-172 MVK, MK mevalonate kinase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G035300 [exp] 676 / 0 AT5G27450 495 / 5e-176 mevalonate kinase (.1.2.3) Potri.015G125201 [exp] 87 / 2e-21 AT5G27450 56 / 5e-11 mevalonate kinase (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015168 [exp] 576 / 0 AT5G27450 513 / 0.0 mevalonate kinase (.1.2.3) Lus10031513 [exp] 571 / 0 AT5G27450 511 / 0.0 mevalonate kinase (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [poplar] [flax] S5 PF00288 [poplar] [flax] GHMP_kinases_N GHMP kinases N terminal domain CL0677 [poplar] [flax] GHMP_C PF08544 [poplar] [flax] GHMP_kinases_C GHMP kinases C terminal
Representative CDS sequence Show only first row Show all	>Potri.013G024000.1 pacid=42811209 polypeptide=Potri.013G024000.1.p locus=Potri.013G024000 ID=Potri.013G024000.1.v4.1 annot-version=v4.1 ATGGAAGTGAAAGCAAGAGCTCCAGGGAAAATCATTCTTTCTGGTGAACATGCAGTTGTTCATGGATCCACTGCTGTTGCTGCATCCATTGGTCTATGCA CCTATGTTTCCCTTCAAGTCCCCCCTTCTAATGAGAATGATGATAGACTGACACTCCAGCTCAAGGATATGGCTTTAGAATTTTCGTGGCCAATTGGAAG AATCAAAGAAGCACTATCTAGCTTAGGAGGTCCTTTCCCATCAACTCCCACGTCCTGCTCAGCAGAATCATTCAAGTTAATTTTAGCTTTGATAGAAGAG CAAAATATTCTGGAGGAAAAAATATCTCTTGCTTCTGGAGTGTCTGCTTTTCTGTGGCTATACACATCAATCCTAGGAATTAAACCCGCTACTGTAGTTG TCACTTCTGACCTTCCACTGGGTTCCGGCCTAGGTTCATCTGCCGCACTCTGTGTTGCATTCTCTGCAGCTCTTCTTGCTTGCTCAGACACTGTGAACAT AGACATGAAACAAGAAGGATGGTTAGTGTTTGGGGAGTCTGAGCTTGAATTATTGAACAAATGGGCTTTTGAAGGTGAAAAGATAATTCATGGAAAGCCA TCTGGGATTGACAACACTGTTAGCACATATGGCAACATGATCAAGTTCAGGTCAGGTAATCTAACACGCATCAAGTCCAGCATGCCACTCAAAATGCTCA TTACTAACACAAAAGTTGGGAGGAACACAAAAGCATTGGTTGCTGGAGTTTCAGAGAGAACGTTAAGAAACCCTGATGCCATGAGTTCTGTTTTTAATGC TGTTGATTCCATCAGTAAGGAATTGGCTAATGTCATCCAGACACCTGCTTCAGATGATCTGTCCATAACTGCAAAGGAAGAGAAGCTAGAAGAGTTAATG GAAATGAATCATGGTTTGCTCCAATGCATGGGGGTAAGCCATGCTTCTATAGAAACTGTTCTTCGAACCACATTGAAATACAAGTTAGCTTCTAAGTTGA CTGGAGCTGGGGGTGGTGGCTGCGTGCTGACACTGTTGCCGACCTTACTGTCAGGAACGATTGTAGATAAAGTAATTGCTGAGCTAGAGTCTTGCGGATT CCAATGTTTGATTGCTGGAATTGGTGGGAACGGTGCTGAGATTTGCTTTAGTGCTTCTTCCTGA
AA sequence Show only first row Show all	>Potri.013G024000.1 pacid=42811209 polypeptide=Potri.013G024000.1.p locus=Potri.013G024000 ID=Potri.013G024000.1.v4.1 annot-version=v4.1 MEVKARAPGKIILSGEHAVVHGSTAVAASIGLCTYVSLQVPPSNENDDRLTLQLKDMALEFSWPIGRIKEALSSLGGPFPSTPTSCSAESFKLILALIEE QNILEEKISLASGVSAFLWLYTSILGIKPATVVVTSDLPLGSGLGSSAALCVAFSAALLACSDTVNIDMKQEGWLVFGESELELLNKWAFEGEKIIHGKP SGIDNTVSTYGNMIKFRSGNLTRIKSSMPLKMLITNTKVGRNTKALVAGVSERTLRNPDAMSSVFNAVDSISKELANVIQTPASDDLSITAKEEKLEELM EMNHGLLQCMGVSHASIETVLRTTLKYKLASKLTGAGGGGCVLTLLPTLLSGTIVDKVIAELESCGFQCLIAGIGGNGAEICFSASS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G27450		MVK, MK	mevalonate kinase (.1.2.3)		Potri.013G024000 [exp]	0	1
AT1G52600			Peptidase S24/S26A/S26B/S26C f...		Potri.003G062800 [exp]	11.95	0.6774
AT4G11820		FKP1, EMB2778, ...	FLAKY POLLEN 1, hydroxymethylg...		Potri.003G120300 [exp]	12.84	0.6895
AT1G49740			PLC-like phosphodiesterases su...		Potri.004G140200 [exp]	15.29	0.6893
AT4G22590		TPPG	trehalose-6-phosphate phosphat...		Potri.001G120500 [exp]	18.70	0.6256
AT5G25570			unknown protein		Potri.006G245100 [exp]	20.78	0.7149
AT4G36130			Ribosomal protein L2 family (....		Potri.007G013000 [exp]	24.73	0.6793
AT4G34215			Domain of unknown function (DU...		Potri.009G096400 [exp]	27.05	0.6959
AT2G33400			unknown protein		Potri.008G170600 [exp]	35.41	0.6118
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.019G014386 [exp]	47.90	0.6729
AT1G12050			fumarylacetoacetase, putative ...		Potri.006G009200 [exp]	49.19	0.6651

Compare expression of checked genes

Potri.013G024000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.