Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08980 520 / 0 ATTOC64-I, ATAMI1 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, AMIDASE-LIKE PROTEIN 1, amidase 1 (.1) AT3G17970 400 / 4e-135 ATTOC64-III translocon at the outer membrane of chloroplasts 64-III (.1) AT5G09420 385 / 3e-129 MTOM64, ATTOC64-V, AtmtOM64 outer membrane 64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, translocon at the outer membrane of chloroplasts 64-V (.1) AT3G25660 77 / 6e-15 Amidase family protein (.1) AT5G07360 66 / 2e-11 Amidase family protein (.1.2) AT5G64440 66 / 2e-11 ATFAAH fatty acid amide hydrolase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G024100 [exp] 736 / 0 AT1G08980 518 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, AMIDASE-LIKE PROTEIN 1, amidase 1 (.1) Potri.015G038600 [exp] 437 / 2e-149 AT3G17970 747 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Potri.012G046900 [exp] 434 / 2e-148 AT3G17970 744 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Potri.001G205300 [exp] 400 / 5e-135 AT5G09420 724 / 0.0 outer membrane 64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, translocon at the outer membrane of chloroplasts 64-V (.1) Potri.007G098600 [exp] 91 / 2e-19 AT5G64440 478 / 2e-162 fatty acid amide hydrolase (.1) Potri.005G070300 [exp] 89 / 6e-19 AT5G64440 488 / 1e-166 fatty acid amide hydrolase (.1) Potri.018G086350 [exp] 72 / 2e-13 AT3G25660 766 / 0.0 Amidase family protein (.1) Potri.015G109400 [exp] 66 / 4e-11 AT5G07360 823 / 0.0 Amidase family protein (.1.2) Potri.001G285900 [exp] 64 / 1e-10 AT5G64440 769 / 0.0 fatty acid amide hydrolase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029941 [exp] 603 / 0 AT1G08980 563 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, AMIDASE-LIKE PROTEIN 1, amidase 1 (.1) Lus10004466 [exp] 592 / 0 AT1G08980 549 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, AMIDASE-LIKE PROTEIN 1, amidase 1 (.1) Lus10042001 [exp] 426 / 5e-145 AT3G17970 714 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10018004 [exp] 418 / 6e-142 AT3G17970 711 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10009050 [exp] 384 / 7e-128 AT3G17970 675 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10009682 [exp] 380 / 5e-127 AT3G17970 700 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10016685 [exp] 80 / 8e-16 AT5G64440 453 / 2e-152 fatty acid amide hydrolase (.1) Lus10020781 [exp] 74 / 9e-14 AT3G25660 780 / 0.0 Amidase family protein (.1) Lus10007361 [exp] 72 / 3e-13 AT3G25660 795 / 0.0 Amidase family protein (.1) Lus10007094 [exp] 69 / 3e-12 AT5G64440 795 / 0.0 fatty acid amide hydrolase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01425 [poplar] [flax] Amidase Amidase
Representative CDS sequence Show only first row Show all	>Potri.013G024200.5 pacid=42811210 polypeptide=Potri.013G024200.5.p locus=Potri.013G024200 ID=Potri.013G024200.5.v4.1 annot-version=v4.1 ATGGCGAGAGACCCGGATTATGGAGCTTTCGTGGACAAGTTTGTGCTTAAACTTACCTCTTCAGCTCATGATCAACCATTGCAGGGCCTCACTTTTGCAG TTAAAGATATATTTGATATGGAGGGATATGTGACTGGATTTGGTCATCCTGACTGGGCAAGGACTCATTCTGCTGCTACATCAACTGCTCCTGCTGTTTT GGCCGTCTTAAGAGGAGGAGCCACATGTGTTGGTAAAACTGTCATGGATGAAATGGCTTACAGTATAGATGGAGAAAATATACATTACGGCACACCTATA AATCCATGTGCTCCCGACCGTGTACCCGGAGGATCTTCAAGTGGGTCTGCTGTTGCGGTTGGTGCAAAAATTGTAGACTTCTCCTTAGGTACTGACACTG GAGGAAGTGTAAGAGTCCCTGCATCATATTGTGGAATTTTGGGGTTTCGACCTTCATATGATGCTGTTCCGAGTGCAGGAGTTGTTCCCTTGGCACAGAG TTTTGATACTGTGGGATGGTTTGCCAGGGACCCTGTGATTCTGAGTCGGGTAGGACATATTCTACTCCAATCGCCTGTTATGGATCCTATCAAACCTAGT CAAGTTATTATTGCAGAAGATTGTTTCCAGCTTTCAAACATTCCAAACGATCGACTAGGTCAAGTTCTTGTGAAATCAGTGGAGAAGATATATGGAGGCC ATGTTTTGAAGCACACGGTCCTCGGGGACTATGTCAAGGAAAAAGTTCCAAGTCTGAAACATTTTATGAGTAACGAAATAAAAGAACTGGAGCATAACAT TCCATCTTTGGCAGCCCTCTCAAATGCCATGAGATCACTTGAAAGGTATGAATTCAAGGATAACCATGGTGAATGGATCACTGCAGTCAAACCTGAATTG GGTCCAGCAATATCAGAAAGGGTATGGGAAGCTGTTAGAACAACTGGGGAAAACGTTGATGCCTGCCACTCTGTAAAGACTGAATTACACGCTGCCCTTG CAACTCTCCTTCAGGATTTTGGTATCCTAGCTATCCCTACTGTTTCAGGGCTTCCACCGAAACTGCAAACAGATCCAACAACACTGAAAATCTTCCGTGC TAAGGCTTTTGGCTTGCTGTCCATTGCTGGAGTATCAGGATTCTGCCAGGTTAGCATACCGCTAGGGATGTATGACAATCTTCCTGTATCTGTTTCATTG TTGGCAAAACAAGGTTCAGACGCTTTCCTGCTCAATGTTGTCGAGAGTCTTTATGGTACCCTCAAAGAACAGGTTGAGATCACTGAAAAATAA
AA sequence Show only first row Show all	>Potri.013G024200.5 pacid=42811210 polypeptide=Potri.013G024200.5.p locus=Potri.013G024200 ID=Potri.013G024200.5.v4.1 annot-version=v4.1 MARDPDYGAFVDKFVLKLTSSAHDQPLQGLTFAVKDIFDMEGYVTGFGHPDWARTHSAATSTAPAVLAVLRGGATCVGKTVMDEMAYSIDGENIHYGTPI NPCAPDRVPGGSSSGSAVAVGAKIVDFSLGTDTGGSVRVPASYCGILGFRPSYDAVPSAGVVPLAQSFDTVGWFARDPVILSRVGHILLQSPVMDPIKPS QVIIAEDCFQLSNIPNDRLGQVLVKSVEKIYGGHVLKHTVLGDYVKEKVPSLKHFMSNEIKELEHNIPSLAALSNAMRSLERYEFKDNHGEWITAVKPEL GPAISERVWEAVRTTGENVDACHSVKTELHAALATLLQDFGILAIPTVSGLPPKLQTDPTTLKIFRAKAFGLLSIAGVSGFCQVSIPLGMYDNLPVSVSL LAKQGSDAFLLNVVESLYGTLKEQVEITEK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G08980		ATTOC64-I, ATAM...	ARABIDOPSIS THALIANA TRANSLOCO...		Potri.013G024200 [exp]	0	1
AT1G30680			toprim domain-containing prote...		Potri.001G461200 [exp]	3.60	0.8537
AT3G62910		APG3	ALBINO AND PALE GREEN, Peptide...		Potri.014G133400 [exp]	5.47	0.8402	APG3.1
AT1G05030			Major facilitator superfamily ...		Potri.014G060800 [exp]	5.91	0.8381
AT1G45110			Tetrapyrrole (Corrin/Porphyrin...		Potri.005G232200 [exp]	6.48	0.8404
AT1G60600		ABC4	ABERRANT CHLOROPLAST DEVELOPME...		Potri.017G050900 [exp]	13.71	0.8386
AT2G32640			Lycopene beta/epsilon cyclase ...		Potri.014G156800 [exp]	16.24	0.7593
AT1G51140	bHLH	bHLH122	basic helix-loop-helix (bHLH) ...		Potri.001G017300 [exp]	18.65	0.8168
AT3G19180		ATCDP1, ARC6H, ...	A. THALIANA CHLOROPLAST DIVISI...		Potri.012G036100 [exp]	20.19	0.7556
AT2G39190		ATATH8	Protein kinase superfamily pro...		Potri.010G221000 [exp]	20.19	0.8303
AT5G15940			NAD(P)-binding Rossmann-fold s...		Potri.001G453500 [exp]	22.04	0.7537

Compare expression of checked genes

Potri.013G024200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.