Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10250 330 / 1e-105 DOT3 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) AT5G03250 303 / 2e-95 Phototropic-responsive NPH3 family protein (.1) AT1G30440 287 / 2e-88 Phototropic-responsive NPH3 family protein (.1) AT3G44820 281 / 1e-86 Phototropic-responsive NPH3 family protein (.1) AT5G66560 277 / 7e-85 Phototropic-responsive NPH3 family protein (.1) AT3G08570 272 / 2e-83 Phototropic-responsive NPH3 family protein (.1) AT3G08660 271 / 2e-83 Phototropic-responsive NPH3 family protein (.1) AT5G48800 271 / 3e-83 Phototropic-responsive NPH3 family protein (.1) AT2G30520 270 / 5e-83 RPT2 ROOT PHOTOTROPISM 2, Phototropic-responsive NPH3 family protein (.1.2.3) AT5G67385 265 / 6e-81 Phototropic-responsive NPH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G048200 [exp] 413 / 6e-137 AT5G64330 993 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Potri.007G112600 [exp] 407 / 1e-134 AT5G64330 989 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Potri.005G075400 [exp] 390 / 2e-128 AT5G10250 695 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) Potri.007G093000 [exp] 380 / 8e-125 AT5G10250 706 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) Potri.001G357100 [exp] 296 / 3e-92 AT1G30440 971 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.018G018600 [exp] 291 / 1e-90 AT4G31820 630 / 0.0 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) Potri.016G139900 [exp] 286 / 1e-88 AT3G08570 723 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.011G091100 [exp] 286 / 1e-88 AT1G30440 924 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.007G033900 [exp] 284 / 2e-87 AT5G66560 789 / 0.0 Phototropic-responsive NPH3 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015169 [exp] 485 / 2e-164 AT5G64330 264 / 7e-79 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Lus10026046 [exp] 373 / 2e-121 AT5G10250 639 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) Lus10014337 [exp] 369 / 8e-120 AT5G10250 620 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) Lus10023274 [exp] 300 / 7e-94 AT1G30440 910 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10038531 [exp] 299 / 3e-93 AT1G30440 915 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10025928 [exp] 286 / 1e-88 AT5G48800 925 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10019522 [exp] 286 / 3e-88 AT3G44820 781 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10033796 [exp] 282 / 4e-87 AT2G14820 735 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Lus10009292 [exp] 279 / 7e-86 AT5G03250 670 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10014632 [exp] 278 / 2e-85 AT2G14820 741 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [poplar] [flax] POZ PF00651 [poplar] [flax] BTB BTB/POZ domain CL0033 [poplar] [flax] PF03000 [poplar] [flax] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Potri.013G024400.1 pacid=42811923 polypeptide=Potri.013G024400.1.p locus=Potri.013G024400 ID=Potri.013G024400.1.v4.1 annot-version=v4.1 ATGGGAAGCAGAAGTCTTGATAGTGGAAAAGCTACTGTATCTGGTAGGAAGCATAACAAGTGTATTATTCTTCCAGCTAATGAGAATATGGTTGCTGAAG CTCTGGAAAAAAGAAACCAGAACTGGATGGTTCGCGCCAGAGTTGCAAATGATTTGATCATACAAGTTGGAGATTCCAGCTTTCAGTTGCATAAGCTTGC CATGGTCTCAAAAAGTGAATACTTGAATAGATTAGTATTCCAGAGAAGAAGCAATGGAGCAAAAGATACCCTCCCCAAGATTGAAATAGACAATTTTCCA GGTGGATCTGAAATCTTTGAGTTAGTAGTGAAGTTCTGCTATGGATGTAAGGTTGATCTTACAGCATCCAACATTGCTCCAGTACACTGTGCTGCACATT TCTTGGAAATGAGTGATGATCTTGAACAAGGAAATCTGATTTCCAAGACAGAGGCTTTTCTAAGTTTCGTATTGTTTTCAGCATGGAAAGACATATTTCG GATTTTGAAAAGCTGTGAATCAATCTCTTTGTGGGCGATGAAGTTGCAAATCCTGCAACGATGCTCTGACGCCATTGCTTGGAAGGCCTGCATAGACCCC AAATTATTTACTCTCAGCGAAGACGATGCAATTAGCTTGAATGTTCTGGAAAATGATGCGGAAAACTTGAAACATAAAGGCATAGCAGAGAATTGGTGGT TTGAAGATGTTTCATGCCTTCGAATAGATCATTTTGTTGAGGTCATTAAATCCATCAAGAGGAAAGGAGTGAGGTCGGAACTTGTTGGATCATGCGTAGC TTATTGGACAGCAAAATGGATTTCTGGACCAGACAATCTGCCAAAACATCTAACCCACCATCTACTGAGGGTTACAACAGAAAGTTTGGTTAGGATACTT CCTGGGGAGGAAAATTCAGTTTCTGCCAATTTTCTGCTTCACCTTCTCAAGTTGGGAATAATGATGAGAATTAGCAGTGAACTATTGAATGAGGTAGAAA AAAGAATAGCTCTCAAATTGGAAAACTGTCGGGTTTCTGATCTGTTGGTCATGAATTATGGCAATGATGATACTGTTTATGATGTGGGAACTGTTTCCAT GGTGGTGGAAGCTTATGCTTCTTCTATGTTGAACAATCCAACTCCAAAACTACTTGTTGTCGGAAAGTTGGTAGATGGGTATCTCGCACAAGTTTCATGG GATGACAAGCTTTCAGTTGAACAATTCCGGTCACTTGCAGAAGCATTGCCGAACGATGCTCGATACTGCCATGACAACCTCTATACCGCCATAGACACAT ACCTAAAGGCACATCCTAGACTCACAGAAGAAGAAAGAATAAGTGTGTGCACAGCCATGGACTACCATAAACTATCACAAGAAGGTCTTAAGCACGCAAC GAGGAATGACAGGCTGCCTGTAAATATTACAACACGGCTTATCCTTCTGGAACAAGTAAATATGGCAAGATCATTGACATCAGTCGGATCCAATTACCAA AGAACAAAGACACAGGCCATCATCAGGGTAAATAGATGTGTGGAGAATGAATGGATGACATCCCGGAATGAGATAAAAATAATGAGAAAAGAGGTTGAGA ACATGAAGATGCAACTAAGTGAATTGCAAATATATATGCAAAATGCAGATCCAGAGAAGAGCCAAGGGATGCCTGATATCAAAGAGAATTTTCGGTTCTG A
AA sequence Show only first row Show all	>Potri.013G024400.1 pacid=42811923 polypeptide=Potri.013G024400.1.p locus=Potri.013G024400 ID=Potri.013G024400.1.v4.1 annot-version=v4.1 MGSRSLDSGKATVSGRKHNKCIILPANENMVAEALEKRNQNWMVRARVANDLIIQVGDSSFQLHKLAMVSKSEYLNRLVFQRRSNGAKDTLPKIEIDNFP GGSEIFELVVKFCYGCKVDLTASNIAPVHCAAHFLEMSDDLEQGNLISKTEAFLSFVLFSAWKDIFRILKSCESISLWAMKLQILQRCSDAIAWKACIDP KLFTLSEDDAISLNVLENDAENLKHKGIAENWWFEDVSCLRIDHFVEVIKSIKRKGVRSELVGSCVAYWTAKWISGPDNLPKHLTHHLLRVTTESLVRIL PGEENSVSANFLLHLLKLGIMMRISSELLNEVEKRIALKLENCRVSDLLVMNYGNDDTVYDVGTVSMVVEAYASSMLNNPTPKLLVVGKLVDGYLAQVSW DDKLSVEQFRSLAEALPNDARYCHDNLYTAIDTYLKAHPRLTEEERISVCTAMDYHKLSQEGLKHATRNDRLPVNITTRLILLEQVNMARSLTSVGSNYQ RTKTQAIIRVNRCVENEWMTSRNEIKIMRKEVENMKMQLSELQIYMQNADPEKSQGMPDIKENFRF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10250		DOT3	DEFECTIVELY ORGANIZED TRIBUTAR...		Potri.013G024400 [exp]	0	1
					Potri.004G071450 [exp]	7.34	0.8958
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Potri.008G069950 [exp]	10.48	0.8656
AT5G05800			unknown protein		Potri.008G196901 [exp]	14.14	0.8965
AT5G09225			unknown protein		Potri.016G036400 [exp]	18.49	0.8015
AT5G37600		ATGLN1;1, GLN1;...	ARABIDOPSIS THALIANA GLUTAMINE...		Potri.007G069600 [exp]	18.54	0.8488
AT4G17380		MSH4, ATMSH4	ARABIDOPSIS MUTS HOMOLOG 4, M...		Potri.001G156200 [exp]	18.76	0.8686
AT1G57790			F-box family protein (.1)		Potri.012G106800 [exp]	20.61	0.8823
AT3G50590			Transducin/WD40 repeat-like su...		Potri.005G136300 [exp]	21.35	0.8874
AT1G14540			Peroxidase superfamily protein...		Potri.008G022264 [exp]	28.56	0.8671
AT3G18670			Ankyrin repeat family protein ...		Potri.008G022900 [exp]	28.61	0.8757

Compare expression of checked genes

Potri.013G024400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.