Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	HSP1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54850 216 / 2e-71 HSP20-like chaperones superfamily protein (.1) AT1G54840 151 / 2e-44 HSP20-like chaperones superfamily protein (.1.2) AT1G20870 121 / 3e-32 HSP20-like chaperones superfamily protein (.1) AT1G76440 103 / 4e-28 HSP20-like chaperones superfamily protein (.1.2.3) AT5G02480 47 / 5e-06 HSP20-like chaperones superfamily protein (.1) AT3G12570 42 / 0.0001 FYD FYD (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G024750 [exp] 177 / 1e-53 AT1G54850 187 / 1e-57 HSP20-like chaperones superfamily protein (.1) Potri.013G024900 [exp] 175 / 5e-52 AT1G54850 175 / 6e-52 HSP20-like chaperones superfamily protein (.1) Potri.001G243100 [exp] 123 / 1e-35 AT1G76440 153 / 9e-49 HSP20-like chaperones superfamily protein (.1.2.3) Potri.002G005400 [exp] 104 / 4e-26 AT1G20870 179 / 1e-51 HSP20-like chaperones superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035725 [exp] 153 / 1e-44 AT1G54850 132 / 1e-36 HSP20-like chaperones superfamily protein (.1) Lus10030721 [exp] 52 / 4e-08 AT1G20870 69 / 4e-14 HSP20-like chaperones superfamily protein (.1) Lus10013203 [exp] 43 / 1e-05 AT1G20870 60 / 3e-12 HSP20-like chaperones superfamily protein (.1) Lus10023420 [exp] 45 / 2e-05 AT3G12570 730 / 0.0 FYD (.1.2.3.4) Lus10040301 [exp] 45 / 3e-05 AT3G12570 731 / 0.0 FYD (.1.2.3.4) Lus10018368 [exp] 40 / 0.0007 AT1G20870 150 / 9e-42 HSP20-like chaperones superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.013G024600.2 pacid=42812157 polypeptide=Potri.013G024600.2.p locus=Potri.013G024600 ID=Potri.013G024600.2.v4.1 annot-version=v4.1 ATGGCTTCTCCATACAGGGCTTCTGACATACGAAGAGGGAATAGTGTACCCAAGCCCATAAATCCTCATCAGCAGGTCCTTGAGGTGGCACCTCTCAACA GTGTGCCATATATTGGTCCTCCTGCTCCATTTGGTGATAGGGTTGGATCTTCAACCCCTGGAGTTCAATCTCAAATGCACAGGGTAGAATCTCCAACCCA AGGGGATGTGGATACTAAACCTGCAGAAGCTGGGTCTTCTATGGTATTTTTCCCATCTCAGACAACTCAAAAGGTGTTGGATGATATCATGGATTCTGCC AGAAATGGAATTGGGCTGGCTGGGAGTGCTGCAACGGGAAATGTGGGACCAATTGTGGGTGCAATGGACATTGGCGAAAGCGATGATGCCTACTTGTTTC GAGTCTCTCTTCCTGGAGTTTCAAGGGATGAAAAAGATTTCAGTTGTGACATTGATCCTGATGGCACGGTGTTCATAAAAGGAGTGACCACGACTGGCGA GAGTACAGTTTGCAAGCACTCTCAGATCTTCAGAATGCAAACACGGAATCTATGTCCTCCTGGTCACTTCTCCATCACCTTTCAGCTACCTGGTCCAGTT GATCACCAACAGTTCAAAGGTAATTTTGGCATTGATGGGATGCTCGAGGGGATTGTAAAGAAAAGGTGA
AA sequence Show only first row Show all	>Potri.013G024600.2 pacid=42812157 polypeptide=Potri.013G024600.2.p locus=Potri.013G024600 ID=Potri.013G024600.2.v4.1 annot-version=v4.1 MASPYRASDIRRGNSVPKPINPHQQVLEVAPLNSVPYIGPPAPFGDRVGSSTPGVQSQMHRVESPTQGDVDTKPAEAGSSMVFFPSQTTQKVLDDIMDSA RNGIGLAGSAATGNVGPIVGAMDIGESDDAYLFRVSLPGVSRDEKDFSCDIDPDGTVFIKGVTTTGESTVCKHSQIFRMQTRNLCPPGHFSITFQLPGPV DHQQFKGNFGIDGMLEGIVKKR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G54850			HSP20-like chaperones superfam...		Potri.013G024600 [exp]	0	1	HSP1.1
AT1G12910		LWD1, ATAN11	LIGHT-REGULATED WD 1, ANTHOCYA...		Potri.014G140700 [exp]	4.24	0.7921
AT2G17710			unknown protein		Potri.005G107800 [exp]	12.80	0.8085
AT2G47790			Transducin/WD40 repeat-like su...		Potri.002G205600 [exp]	15.49	0.7768
AT2G01150		RHA2B	RING-H2 finger protein 2B (.1)		Potri.008G125700 [exp]	15.81	0.7919	RHA2.1
AT1G15270			Translation machinery associat...		Potri.001G181800 [exp]	18.33	0.7861
AT2G47115			unknown protein		Potri.002G190200 [exp]	19.10	0.8004
AT3G06260		GolS9, GATL4	galactinol synthase 9, galactu...		Potri.001G081100 [exp]	19.33	0.6900
AT4G16770			2-oxoglutarate (2OG) and Fe(II...		Potri.003G079600 [exp]	20.61	0.7710
AT1G26340		B5 #6, B5#6, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Potri.010G156900 [exp]	21.90	0.7365	B5.2
					Potri.008G005500 [exp]	24.06	0.8020

Compare expression of checked genes

Potri.013G024600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.