Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54850 176 / 2e-52 HSP20-like chaperones superfamily protein (.1) AT1G54840 156 / 2e-43 HSP20-like chaperones superfamily protein (.1.2) AT1G20870 124 / 1e-30 HSP20-like chaperones superfamily protein (.1) AT1G76440 100 / 4e-25 HSP20-like chaperones superfamily protein (.1.2.3) AT5G02480 52 / 7e-07 HSP20-like chaperones superfamily protein (.1) AT5G12030 44 / 4e-05 AT-HSP17.6A heat shock protein 17.6A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G024750 [exp] 494 / 2e-173 AT1G54850 187 / 1e-57 HSP20-like chaperones superfamily protein (.1) Potri.002G005400 [exp] 172 / 2e-48 AT1G20870 179 / 1e-51 HSP20-like chaperones superfamily protein (.1) Potri.013G024600 [exp] 162 / 9e-47 AT1G54850 216 / 2e-71 HSP20-like chaperones superfamily protein (.1) Potri.001G243100 [exp] 115 / 3e-30 AT1G76440 153 / 9e-49 HSP20-like chaperones superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035725 [exp] 122 / 1e-30 AT1G54850 132 / 1e-36 HSP20-like chaperones superfamily protein (.1) Lus10018368 [exp] 76 / 5e-15 AT1G20870 150 / 9e-42 HSP20-like chaperones superfamily protein (.1) Lus10007642 [exp] 71 / 2e-13 AT1G20870 145 / 2e-40 HSP20-like chaperones superfamily protein (.1) Lus10030721 [exp] 57 / 2e-09 AT1G20870 69 / 4e-14 HSP20-like chaperones superfamily protein (.1) Lus10013203 [exp] 44 / 1e-05 AT1G20870 60 / 3e-12 HSP20-like chaperones superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.013G024900.2 pacid=42811329 polypeptide=Potri.013G024900.2.p locus=Potri.013G024900 ID=Potri.013G024900.2.v4.1 annot-version=v4.1 ATGTTTTGGTTAACGCTCCAGGCCAAAACAGTGTTGTGTTGTGCTGCAGGTACCTTGTATGGAGAAATGGCATGGCTTCTCTTCCTAGCTGCCAAAACTA CTAAAAGACATAAACTTTCTCAAGTTTTACTATGCAAAACCCAAAACAAACAACAACCCATTATTTCGCTTCATTGCCTTTACTCTCTCAAGTCTCAACC TCTCTTTCTTACTGATTCTGATTTATTATATTGCAAACATATGGATACTTCATCTCAGGCTGCAAATTCTCTTTCGACTGCGGGATCAGAATCCTTTGTT GATTCAAGTGTCATAGCCAACAATGACCAACTTTTCCTCCTTTATTTCATCATTGGAAACTTTTTTGGGCCTGATCTGAAAGAAGGACCTAAAAAATCAC TGTTTCAAAGAGCAGCTGAGGGTCTATCAACTTACTTATTAGAACAACTAACTGGAGGCTACATCAAAACTGAAGAAATAGAGCATATATACCACTATGC ACTTCGAAAGGCAGAGAAGCATCTTGCTCTGAAATTATCCTTGTTGCACCAATTCTTTCTAGGCAACCTACCTGCTTCTGGAACTGCCAGTTACCCGCAG TTTCCCGATATGTTTCCAACCCACCTACATCCTCATTCACTAATGGATAATAGATACCAAATTGTGTCAAATGTGATATTCATCAACAACCCAAATACCT CCCATATTGGCTCGAAGGACATTGAGAGGTTTATAAGATTAACTGGGCTCGAGAATCTTCTGCTGGATAGAGATGCAGCAAGATTTCACTCATATTTGGA TGGCAGTGCTCTATATGATGTGATAGTGCATGAGGCTGGACCTGGTGTAGAATGGCCTCCTACAAGTACTCATCATTTTCATAAGAGAGCAAAACATGCA GATGGCATCCTGCAAGCCAGGGATCTGCATGTCTATGATGTGCAACCTCTTAGCTGTGTGCCATTTAGAGGTTTGCCTCCTTCTCACAGCTGTACAACAT CTCTACTAGCCAGAGATTCTGGAAAATCTGCTGAAGAAAGTCCACGGATGGTTTTTCTTCCATCAGGAGCGAAAAAGGAAGAGTGGAACAGTTTGGTGGC TGCATGTAAAGGTGGACTTGCATTGACTGGTACTGCTGCAATGGGCCAGGTGCAACAGACTGTCGGGCTTGTTGATATTGGTGAGTGTGAAGATGCATAC CTTTTCCGGGTGTCTCTTCCTGGAGTGAGACAAGACGACAATGAATTCAGCTGCAAAATCGAAAATGATGGTAAGGTGCTGATAAAGGGCATCACAACAA CAGGTGAGAAAACGGTGTACAGGTTCTCCCAAAAGTTTGAGATGCTATCCAGAAACCTCTGCTCACCAGGGCAGTTTTCTATTTCATTTCAACTGCCTGG TCCAGTTGATCCTAGTCACTTTTCAGGCAAATTTGGCTTTGATGGGATTCTAGAGGTGATTGTCATGAAGAGCATATAA
AA sequence Show only first row Show all	>Potri.013G024900.2 pacid=42811329 polypeptide=Potri.013G024900.2.p locus=Potri.013G024900 ID=Potri.013G024900.2.v4.1 annot-version=v4.1 MFWLTLQAKTVLCCAAGTLYGEMAWLLFLAAKTTKRHKLSQVLLCKTQNKQQPIISLHCLYSLKSQPLFLTDSDLLYCKHMDTSSQAANSLSTAGSESFV DSSVIANNDQLFLLYFIIGNFFGPDLKEGPKKSLFQRAAEGLSTYLLEQLTGGYIKTEEIEHIYHYALRKAEKHLALKLSLLHQFFLGNLPASGTASYPQ FPDMFPTHLHPHSLMDNRYQIVSNVIFINNPNTSHIGSKDIERFIRLTGLENLLLDRDAARFHSYLDGSALYDVIVHEAGPGVEWPPTSTHHFHKRAKHA DGILQARDLHVYDVQPLSCVPFRGLPPSHSCTTSLLARDSGKSAEESPRMVFLPSGAKKEEWNSLVAACKGGLALTGTAAMGQVQQTVGLVDIGECEDAY LFRVSLPGVRQDDNEFSCKIENDGKVLIKGITTTGEKTVYRFSQKFEMLSRNLCSPGQFSISFQLPGPVDPSHFSGKFGFDGILEVIVMKSI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G54850			HSP20-like chaperones superfam...		Potri.013G024900 [exp]	0	1
AT4G24520		AR1, ATR1	ARABIDOPSIS CYTOCHROME REDUCTA...		Potri.002G106566 [exp]	1.73	0.9322
					Potri.004G093250 [exp]	1.73	0.9213
AT3G53480		PIS1, ABCG37, P...	polar auxin transport inhibito...		Potri.010G153800 [exp]	4.12	0.8833
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Potri.007G113800 [exp]	5.09	0.8904
					Potri.008G089401 [exp]	7.74	0.9176
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Potri.017G018801 [exp]	7.74	0.9186
AT4G19490		ATVPS54	ARABIDOPSIS THALIANA VPS54 HOM...		Potri.001G442900 [exp]	8.12	0.8581
AT1G15780			unknown protein		Potri.003G028401 [exp]	8.30	0.8738
AT5G04000			unknown protein		Potri.016G044001 [exp]	8.48	0.9043
AT5G19485			transferases;nucleotidyltransf...		Potri.009G066400 [exp]	8.94	0.8759

Compare expression of checked genes

Potri.013G024900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.