Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-HAP5.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08970 252 / 5e-85 CCAAT NF-YC9, HAP5C "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) AT1G54830 245 / 2e-82 CCAAT NF-YC3 "nuclear factor Y, subunit C3", nuclear factor Y, subunit C3 (.1.2.3) AT3G48590 202 / 4e-65 CCAAT NF-YC1, ATHAP5A, HAP5A "nuclear factor Y, subunit C1", nuclear factor Y, subunit C1 (.1) AT5G63470 199 / 9e-64 CCAAT NF-YC4 "nuclear factor Y, subunit C4", nuclear factor Y, subunit C4 (.1.2) AT1G56170 196 / 3e-63 CCAAT NF-YC2, ATHAP5B, HAP5B "nuclear factor Y, subunit C2", nuclear factor Y, subunit C2 (.1.2) AT5G50480 145 / 3e-43 CCAAT NF-YC6 "nuclear factor Y, subunit C6", nuclear factor Y, subunit C6 (.1) AT5G27910 122 / 1e-34 CCAAT NF-YC8 "nuclear factor Y, subunit C8", nuclear factor Y, subunit C8 (.1) AT5G50490 113 / 3e-31 CCAAT NF-YC5 "nuclear factor Y, subunit C5", nuclear factor Y, subunit C5 (.1) AT5G50470 107 / 2e-28 CCAAT NF-YC7 "nuclear factor Y, subunit C7", nuclear factor Y, subunit C7 (.1) AT5G38140 96 / 4e-24 CCAAT NF-YC12 "nuclear factor Y, subunit C12", nuclear factor Y, subunit C12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G035800 [exp] 395 / 6e-141 AT1G08970 246 / 5e-82 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Potri.010G032301 [exp] 303 / 1e-104 AT1G08970 237 / 1e-78 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Potri.008G203500 [exp] 294 / 5e-101 AT1G08970 241 / 2e-80 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Potri.007G070900 [exp] 229 / 1e-75 AT1G56170 235 / 3e-78 "nuclear factor Y, subunit C2", nuclear factor Y, subunit C2 (.1.2) Potri.005G094900 [exp] 229 / 2e-75 AT1G56170 242 / 5e-81 "nuclear factor Y, subunit C2", nuclear factor Y, subunit C2 (.1.2) Potri.015G097400 [exp] 201 / 1e-64 AT3G48590 314 / 3e-109 "nuclear factor Y, subunit C1", nuclear factor Y, subunit C1 (.1) Potri.012G098500 [exp] 188 / 1e-59 AT3G48590 265 / 4e-90 "nuclear factor Y, subunit C1", nuclear factor Y, subunit C1 (.1) Potri.017G120000 [exp] 118 / 1e-32 AT1G56170 127 / 1e-36 "nuclear factor Y, subunit C2", nuclear factor Y, subunit C2 (.1.2) Potri.003G124500 [exp] 114 / 3e-32 AT1G54830 116 / 2e-33 "nuclear factor Y, subunit C3", nuclear factor Y, subunit C3 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029939 [exp] 258 / 9e-87 AT1G08970 243 / 3e-81 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Lus10004468 [exp] 257 / 2e-86 AT1G08970 249 / 2e-83 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Lus10021934 [exp] 250 / 4e-84 AT1G08970 250 / 5e-84 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Lus10041221 [exp] 250 / 4e-84 AT1G08970 248 / 2e-83 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Lus10016750 [exp] 197 / 6e-63 AT3G48590 298 / 1e-102 "nuclear factor Y, subunit C1", nuclear factor Y, subunit C1 (.1) Lus10022444 [exp] 186 / 5e-58 AT3G48590 300 / 1e-102 "nuclear factor Y, subunit C1", nuclear factor Y, subunit C1 (.1) Lus10024515 [exp] 116 / 8e-33 AT1G56170 119 / 6e-35 "nuclear factor Y, subunit C2", nuclear factor Y, subunit C2 (.1.2) Lus10008013 [exp] 111 / 6e-31 AT1G54830 112 / 5e-32 "nuclear factor Y, subunit C3", nuclear factor Y, subunit C3 (.1.2.3) Lus10026780 [exp] 62 / 5e-11 AT5G19490 189 / 1e-58 Histone superfamily protein (.1) Lus10030832 [exp] 58 / 2e-10 AT5G43250 147 / 3e-46 "nuclear factor Y, subunit C13", nuclear factor Y, subunit C13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [poplar] [flax] Histone PF00808 [poplar] [flax] CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Representative CDS sequence Show only first row Show all	>Potri.013G025000.1 pacid=42810809 polypeptide=Potri.013G025000.1.p locus=Potri.013G025000 ID=Potri.013G025000.1.v4.1 annot-version=v4.1 ATGGATCAGCAAGGGTATGGGACAAATCCATATCAGCCAAACCAAATGCCTGCTGCCTCAAATCCTGGATCAGTTCCTGGTCAGCCTGCAGGAGCTCAGC TTGAACAGCATCAACTTGCCTATCAGCAGATCCACCAGCAACAGCAACAGCAACTCCAGCAACAACGCCAGTCTTTTTGGACAAATCAGTATAAAGAAAT AGACAAAGTTACTGATTTCAAAAATCACAGTCTTCCCTTGGCAAGGATCAAGAAGATCATGAAGGCTGATGAGGATGTCAAGATGATATCAGCTGAGGCA CCAGTTATATTCGCCAGGGCTTGTGAAATGTTTATTTTAGAGTTGACCTTGCAGTCTTGGAATCACACGGAGGAGAACAAGAGGAGGACACTACAGAAGA ATGATATTGCTGCAGCTATCACTAGGACTGATATCTTTGATTTCCTGGTTGACATTGTACCTAGGGAGGATATGAAAGATGAAGTGCTTGCATCAATCCC AAGAGGAACAATGCCTGTTGGAGGGCCTGTTGATGCACTCCCTTACTGCTATATGCCACATCCACATGCACCTCAGGTCGGGACTCCTGGGATGATAATG GGCAAGCCTGTGACAGACCCAGCCATGTATGCCCAGCAATCTCATCCCTATATGGCACAGCATATGTGGCCACAGGGACCAGAGCAGCAGCAGTCACCCT CAGATCAGTAG
AA sequence Show only first row Show all	>Potri.013G025000.1 pacid=42810809 polypeptide=Potri.013G025000.1.p locus=Potri.013G025000 ID=Potri.013G025000.1.v4.1 annot-version=v4.1 MDQQGYGTNPYQPNQMPAASNPGSVPGQPAGAQLEQHQLAYQQIHQQQQQQLQQQRQSFWTNQYKEIDKVTDFKNHSLPLARIKKIMKADEDVKMISAEA PVIFARACEMFILELTLQSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDMKDEVLASIPRGTMPVGGPVDALPYCYMPHPHAPQVGTPGMIM GKPVTDPAMYAQQSHPYMAQHMWPQGPEQQQSPSDQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G08970	CCAAT	NF-YC9, HAP5C	"nuclear factor Y, subunit C9"...		Potri.013G025000 [exp]	0	1	Pt-HAP5.3
AT3G12400		ELC, ATELC	Ubiquitin-conjugating enzyme/R...		Potri.003G191100 [exp]	2.23	0.9144
AT1G28200		FIP1	FH interacting protein 1 (.1)		Potri.002G102800 [exp]	2.44	0.9212	Pt-FIP1.3
AT5G22080			Chaperone DnaJ-domain superfam...		Potri.009G016700 [exp]	4.24	0.9028
AT3G54300		ATVAMP727	vesicle-associated membrane pr...		Potri.010G239900 [exp]	6.00	0.9249	Pt-VAMP727.2
AT3G12490		ATCYS6, ATCYSB	ARABIDOPSIS THALIANA PHYTOCYST...		Potri.006G033201 [exp]	6.24	0.8969
AT3G19910			RING/U-box superfamily protein...		Potri.005G090800 [exp]	6.70	0.8929
AT5G48655			RING/U-box superfamily protein...		Potri.003G148300 [exp]	8.36	0.9018
AT4G27020			unknown protein		Potri.001G424500 [exp]	9.16	0.9079
AT1G76940			RNA-binding (RRM/RBD/RNP motif...		Potri.012G019300 [exp]	9.27	0.8664
AT5G59050			unknown protein		Potri.009G038600 [exp]	10.09	0.8896

Compare expression of checked genes

Potri.013G025000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.