Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-CAX11.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08960 603 / 0 CCX5, AtCXX5, ATCAX11, CAX11 cation calcium exchanger 5, Arabidopsis thaliana cation calcium exchanger 5, cation exchanger 11 (.1) AT5G17860 196 / 1e-55 CAX7 calcium exchanger 7 (.1) AT5G17850 155 / 1e-40 Sodium/calcium exchanger family protein (.1) AT1G54115 128 / 3e-31 ATCCX4 cation calcium exchanger 4 (.1) AT3G14070 119 / 2e-28 ATCCX3, CAX9 CATION CALCIUM EXCHANGER 3, cation exchanger 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G065900 [exp] 172 / 9e-47 AT5G17850 508 / 1e-175 Sodium/calcium exchanger family protein (.1) Potri.013G065800 [exp] 170 / 4e-46 AT5G17860 420 / 9e-141 calcium exchanger 7 (.1) Potri.019G040200 [exp] 166 / 2e-44 AT5G17860 449 / 2e-152 calcium exchanger 7 (.1) Potri.019G040301 [exp] 152 / 7e-40 AT5G17850 393 / 2e-131 Sodium/calcium exchanger family protein (.1) Potri.003G066900 [exp] 118 / 7e-28 AT1G54115 802 / 0.0 cation calcium exchanger 4 (.1) Potri.001G167200 [exp] 115 / 4e-27 AT1G54115 811 / 0.0 cation calcium exchanger 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029938 [exp] 650 / 0 AT1G08960 640 / 0.0 cation calcium exchanger 5, Arabidopsis thaliana cation calcium exchanger 5, cation exchanger 11 (.1) Lus10004469 [exp] 628 / 0 AT1G08960 642 / 0.0 cation calcium exchanger 5, Arabidopsis thaliana cation calcium exchanger 5, cation exchanger 11 (.1) Lus10001330 [exp] 180 / 1e-49 AT5G17860 552 / 0.0 calcium exchanger 7 (.1) Lus10013635 [exp] 179 / 2e-49 AT5G17860 540 / 0.0 calcium exchanger 7 (.1) Lus10013634 [exp] 170 / 6e-46 AT5G17850 512 / 4e-177 Sodium/calcium exchanger family protein (.1) Lus10001329 [exp] 162 / 7e-43 AT5G17850 505 / 8e-174 Sodium/calcium exchanger family protein (.1) Lus10015668 [exp] 134 / 1e-34 AT1G54115 484 / 8e-168 cation calcium exchanger 4 (.1) Lus10037681 [exp] 134 / 2e-33 AT1G54115 763 / 0.0 cation calcium exchanger 4 (.1) Lus10037682 [exp] 133 / 2e-32 AT1G54115 758 / 0.0 cation calcium exchanger 4 (.1) Lus10005673 [exp] 99 / 6e-22 AT5G17850 346 / 7e-114 Sodium/calcium exchanger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01699 [poplar] [flax] Na_Ca_ex Sodium/calcium exchanger protein
Representative CDS sequence Show only first row Show all	>Potri.013G025100.1 pacid=42810803 polypeptide=Potri.013G025100.1.p locus=Potri.013G025100 ID=Potri.013G025100.1.v4.1 annot-version=v4.1 ATGGCCTTCTCCTCCCTCCCTCCTCTCCTAAACACCATTGTAGCAATCTCCATAACCCTCATCTCCACTCTCATCTTCTCAAAATCCCAACTTTACCCCA CCCCGTCTCCTCAAATCCCCCATAGATCCCTCCTCTCTCAAAATCAAGATCAAAACTTTACTCTCTCTTGCACCTCTTTGCCCGCTTCAAATGGCTTTAT TGACTACCTTTCCCTTCACTTTTGCCTCTTCAAAGAGAAGTTTTTGCTTTCAATTCCTTGCCTTTCATTATTTGTACTTCTTCATTTTTATGTTCTTATT GAAACAGCACAATCCCATTTCTCTATAGTGACAACAAAGCTAACCCATCATTTAAATCTCTCTCCAAGTATGGGAGGTGTGACCCTTTTGGCTTTAGGTA ATGGGGCACCTGATGTTTTTGCATCACTTGCTGCTGTTAGGTCAGGGCAATATAGAACTGGGTTTGGTGCTATATTGTCTGCTGGGACTTTTGTTTCTGC CCTTGTTGTTGGTTTTGTTGCTATTTATTCTGCACCATTTAATGTGGATCCTGCTTCTTTTATAAGGGATGTTGGGTTTTATTTGTTAGGTGCTTTGATT TTGTTTTATGTTTATTTGAGTGGGGAGATATTCTTTTGGCAGGCTGTTGGGTTTGTTGGGTTTTATTTGTTTTTCGTTGGGTTTGTGTTTTGGATGGATT TGGGAAGTGGTAGTATTGCTGCTGCTGGCGGTGCCGGTGGTGATGATAGAAGGGATGCAAGAGAAATGGATTGCGAAAGAGGTGGTGAAGTGGTTGTGGG GAGTTTGGCGGGTGAGAAGGAGCATTCGGGATGTTTTGAGAGGGCTTATGGAAAGATCTCAAAGTTATGGGAGTTTCCTGTCTCTTTTCTTCTGAAGCTC ACAATTCCTCAAAGTGCACCTTTGGAATGGAACAGGTTCTACATGTCTGCCAACATTGCTCTTTGCCCAGTAGCTCTTTTGTATGCTTGCAACTCATTCA TGCCGTTAGATCATCCCATTGTATTCCTCTTTCCGAACACTCATTTCCCTCTCTGGTTCATAGTACTTTTGGCAAGCTCTTCACTCGCAGTTCTGCACTT TATACTTGAAAAGGAACCTCCAAAGAACGAGCAAATATCAGTGGTGCTTGTGGCATTTGTAATGAGTGTCTTTTGGATATCTGCTGTTGCTGGTGAACTT CTCAACTGCCTGGAAGCACTTGGGATACTTCTTGAAGTGCCCCCATCTCTCCTTGGGCTTACAGTACTTGCTTGGGGAAACTCTGTGGGTGATCTAGTTG CTGATGTTGCAGTTGCCAAAGCTGGCCAGCCAGCTATGGCCATGGCTGGATGCTTTGCTGGACCAATGTTTAACATGCTTGTTGGGCTTGGATCAGCTTT GGTGATACTAACAGCTGATGTTTATCCAAAAGCTTATAAACTCCATTTCCACGTTGGTATTGTGATTGCATTTGTGTTTTTGCTTTTCGGACTGATGGGA TCTCTGTTAGTCATCACTTGGTCCAGATTTCGGGTGCCTAGGTTTTGGGGTTTCTGCCTTGTTGGGCTTTATGTCTTTTTTATGGCAGTTAGCTTAGTCA TAGCTATGTTCTCAGGGTGA
AA sequence Show only first row Show all	>Potri.013G025100.1 pacid=42810803 polypeptide=Potri.013G025100.1.p locus=Potri.013G025100 ID=Potri.013G025100.1.v4.1 annot-version=v4.1 MAFSSLPPLLNTIVAISITLISTLIFSKSQLYPTPSPQIPHRSLLSQNQDQNFTLSCTSLPASNGFIDYLSLHFCLFKEKFLLSIPCLSLFVLLHFYVLI ETAQSHFSIVTTKLTHHLNLSPSMGGVTLLALGNGAPDVFASLAAVRSGQYRTGFGAILSAGTFVSALVVGFVAIYSAPFNVDPASFIRDVGFYLLGALI LFYVYLSGEIFFWQAVGFVGFYLFFVGFVFWMDLGSGSIAAAGGAGGDDRRDAREMDCERGGEVVVGSLAGEKEHSGCFERAYGKISKLWEFPVSFLLKL TIPQSAPLEWNRFYMSANIALCPVALLYACNSFMPLDHPIVFLFPNTHFPLWFIVLLASSSLAVLHFILEKEPPKNEQISVVLVAFVMSVFWISAVAGEL LNCLEALGILLEVPPSLLGLTVLAWGNSVGDLVADVAVAKAGQPAMAMAGCFAGPMFNMLVGLGSALVILTADVYPKAYKLHFHVGIVIAFVFLLFGLMG SLLVITWSRFRVPRFWGFCLVGLYVFFMAVSLVIAMFSG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G08960		CCX5, AtCXX5, A...	cation calcium exchanger 5, A...		Potri.013G025100 [exp]	0	1	Pt-CAX11.1
AT1G29470			S-adenosyl-L-methionine-depend...		Potri.005G184500 [exp]	5.09	0.6461
AT4G24630			DHHC-type zinc finger family p...		Potri.002G065500 [exp]	12.64	0.5908
AT5G57110		AT-ACA8, ACA8	"AUTOINHIBITED CA2+ -ATPASE, I...		Potri.018G139900 [exp]	15.68	0.5534
AT4G12010			Disease resistance protein (TI...		Potri.017G103101 [exp]	21.84	0.5776
AT1G27770		PEA1, ACA1	PLASTID ENVELOPE ATPASE 1, aut...		Potri.014G016600 [exp]	33.16	0.5555	Pt-ACA1.1
AT5G52020	AP2_ERF		Integrase-type DNA-binding sup...		Potri.015G136300 [exp]	41.56	0.5294
AT3G06890			unknown protein		Potri.010G013100 [exp]	41.58	0.5471
AT4G33410		ATSPPL1	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Potri.015G145600 [exp]	56.70	0.4986
AT1G20650		ASG5	ALTERED SEED GERMINATION 5, Pr...		Potri.005G252000 [exp]	63.75	0.5163
AT1G09810		ECT11	evolutionarily conserved C-ter...		Potri.003G008400 [exp]	63.93	0.5253

Compare expression of checked genes

Potri.013G025100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.