Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24960 515 / 7e-169 unknown protein AT4G02210 246 / 5e-72 unknown protein AT5G05800 105 / 2e-23 unknown protein AT3G11290 84 / 1e-16 unknown protein AT4G02550 65 / 1e-10 unknown protein AT3G11310 63 / 7e-10 unknown protein AT2G19220 62 / 1e-09 unknown protein AT2G29880 54 / 2e-07 unknown protein AT1G30140 53 / 3e-07 unknown protein AT5G27260 49 / 1e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G265900 [exp] 574 / 0 AT2G24960 761 / 0.0 unknown protein Potri.002G200600 [exp] 205 / 1e-56 AT4G02210 471 / 1e-163 unknown protein Potri.011G163248 [exp] 95 / 5e-21 AT4G02550 93 / 4e-22 unknown protein Potri.006G202550 [exp] 86 / 5e-18 AT4G02550 76 / 6e-16 unknown protein Potri.010G215600 [exp] 86 / 6e-18 AT4G02550 77 / 7e-16 unknown protein Potri.015G008050 [exp] 84 / 2e-17 AT4G02550 77 / 2e-16 unknown protein Potri.009G022650 [exp] 82 / 5e-17 AT4G02550 79 / 7e-17 unknown protein Potri.002G023800 [exp] 83 / 8e-17 AT2G24960 89 / 2e-19 unknown protein Potri.006G196716 [exp] 82 / 1e-16 AT4G02550 69 / 2e-13 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026250 [exp] 486 / 7e-158 AT2G24960 750 / 0.0 unknown protein Lus10013421 [exp] 184 / 1e-50 AT4G02210 418 / 1e-144 unknown protein Lus10010304 [exp] 172 / 3e-46 AT4G02210 395 / 1e-135 unknown protein Lus10025958 [exp] 99 / 4e-22 AT2G24960 102 / 4e-24 unknown protein Lus10014257 [exp] 97 / 3e-20 AT3G14820 282 / 1e-89 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10042421 [exp] 87 / 4e-20 AT2G24960 92 / 1e-22 unknown protein Lus10002039 [exp] 70 / 2e-12 AT3G11290 91 / 2e-20 unknown protein Lus10024329 [exp] 64 / 2e-10 AT5G05800 81 / 7e-17 unknown protein Lus10016838 [exp] 60 / 7e-10 AT2G24960 71 / 4e-14 unknown protein Lus10023062 [exp] 57 / 3e-08 AT4G02210 67 / 4e-12 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF12776 [poplar] [flax] Myb_DNA-bind_3 Myb/SANT-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.013G025200.3 pacid=42812190 polypeptide=Potri.013G025200.3.p locus=Potri.013G025200 ID=Potri.013G025200.3.v4.1 annot-version=v4.1 ATGGCCAGCCAAATGCTTCCGATTAATGATCGAATGAGAATTAATTGGACGTCAATGATGGAGCGGTATTTCATCGATCTTATGTTAGATCAGTTGCATA GGGGAAATAGAATGGGTCATACCTTCAACAAACAAGCTTGGACGGATATGCTGACCATGTTCAATTCAAGATTCGGGACTAAATATGACCGAGACACCTT GAAAAGTCATTATTCAAATTTGTGGAAGCAATACAATGATGTGAAGAATCTTCTTGAACAGAGTGGATTTTCTTGGGATGATAATCGAAAAATGGTTGTA GCTAGTGATGATGCATGGGCAACCATTATCAAGGCGAACTCTGATGCACAGTACTACTGGAGGAAGTTTTTGGTGAACTTCAATGATTTGTGCTTGATAT TTGCATACACAGCAGCAGATGGAAGATACAGCCGTTCAAGTCATGATATAGACTTGGATGATGATATTCAAGGCCTGAACTTTGATGCTGGAATGGGTGG CTTTCCCTCAGAAAGCACTAATTGTGTGAAGGCAAAGTGGACATCAGCCATGGACCGATTTTTTCTTGAGCTTATGTTGGTCGAAGTCAAAAAAGGAAGC AAAAACAACAATACATTCAGCAAAGAAGCATGGAAAGACATGCTTACTTTGTTCAATGCAAAATTTTGTTCTCAATATGGAAAAAATGTTCTGAAGCGCC GCTATAAGAAACTTTTCAAGTACTATTGTGAGATGAGAAGTCTACTTGAGAGAAAGGCACACCCTGATATGCATTCATATAGAAAGAAGACCTTACTAAA CTATCAAGATTTGAGCTTGGTTTATGGAAATGAACTCATCAGTGGACATCAAGGTTGCATGCACCAAGATGAAAACTTTGAAGATGTGACCTTACAAGTT AAAACTGACAGAAATAAGGGTCACCATCACTCTGTTCGAAGTGACGTGGGACCATGTTGGAAATCATCAATGGATCGCTACTTTATTGATTTGTTGCAAA ACCAGGCGCTTATAGGGAATAAAATCGGTCATGAATTGACAACTGAAGCATGGGTTGAATTAACCAGGTTGTTCAAAGCAAAATTCGGGTCACAATATGA TGATTGCATCCTGAAAAATCAGTTCAACCATTTGAGGACAAGGTATAATGACATAAAATTTCTTCTCGAGCAGAGTGGCTTTTCTTGGGATGAAACTCGA GACATGGTAACTGCTGAAGATTGTGTTTGGGATTCTTATACCAAGGTGTATCCTCATGTTCAATCATACAGAAATAAATCTGTTGCAAGCTACTACAAGC TATGTGTTATATACGGGGAAGAAAGTTCCAATGGAAGATACAGTGACATGGCTCAACAGGCGGATATTGACAGCAAACCTCCAGTGTTGATGGTTGGAGA AGAGGACCAATGCCTTGCAAATGGCGATTGTTCAAAGCCAGATTGGACACCTTCAATGGACCGCTATTTTATCGATCTTATGTTAGACCAAGTTCATAGA GGGAATAAGAGCAGTTACACTTTGGATGATCAAGCTTGGATTGATATGGCTGTTATGCTCAATGAAAGATTTGGATCACAACATGAAAAAGATATCCTGA GGCAGCGCCATGAAAGTTTGGGAAAGCTTTTTAATGGCATGAAGAATCTTCTTGGCCAGAAAGGGTTTTCTTGGAATGAAACGCAGCAGTTAGTCAAAGC ATATGATGATGTTTGGGAGGCTTATTCGAAGGAACATCCTAATGCCAGATCATACAGATCCACTCCGAAGCCAGATTACAATGACTTGTACTTGATTTAT GGAAATTCAATTTCAGATGAAGGCCATAACCAATCAGGTCAAGGAGCCAAAAATTGCAATCGCGGCTTCTGGAATGCTGATTGGACACCACCAATGGACC AATTATTTATAAATCTAATGCTAGAGCATGTTCGTCAAGGAAGTATGGTTGATCAAAGATTTAATAAGCAAGCCTGGAGTGATATGGTTTCAAAGTTTAG TGCTGCATTTGGATCTCAGCATGACCAATATGTCTTAGAAAGGCGTTTTATGAATTTAAGGAAGCTATTTGGTGATATGAAAAATTTACTTGATCAGAGT GGATTTGCTTGGGATGACCGAAGACACATGATAATTGCTGGTGACAGTCTTTGGAATGCTTATCTGAAGGATTACCCTGATGCACATCCATACCGCAATA GGGCTCTTCCTAATTACGATGATTTGTTCTTGATATATGGAGACAAAAACAATCATGAGAGTAACCACCATCACTCAGTGGTTGGCAATGGCCATGTCCT CGGATCAAATGTTGATGACGAAGATGGGCTATCCCCTATTGATTCTAATCATCCATGGATAAATTGGACAAAACCGATGGAAATATATTTTATAAAACTC ATGTCAGAGCAGGTGCTTGAAGGGAACAAAAACCATGAGACATTCAATGAGCAAGCTTGGGCCTGGATAGTTGCAGCATTCAATGAAAAATTTAGACTTC TATGTGAGAGAGAAGCTGTCGAAAGCTGGTATCTAAGCTTGATGAAAGAGTATAGCAACATTACAAATATTCTCAATCAGAACGGTTTTGCTTGGGATGA AACAGAGCAGATGGTGATAGCTGACGATGATGACTGGTCTGCTTATATCAAGGAACACCCAGGTGCAATGAAATACAAAGGCAGGGTCCTGGGTAGTTAT AACGATCTTTGTGTAATATATGGTAATAGCGTGGCAGCAGGGAGATCAAGTTACTTGGGTGTAAACACGGTGATTGACAACAATGCCTTTGATATGGGGA TTGATGGTGTTTTTGGAGATGCACCATACCCTACTGGAAAACTTGAAATATCTGATCAAAGGCATAAACGGAAGTCTCTGTCTTCCTCCACAACGATGGC TTCGAGGAAAGTTCACAGACCTAAGCGAGGAGAGGCTAAAGAACCAGTTGGTCTGAAACCAATGGGAGTTATGGAGGAGCACAACGAAGAACGGATCTCA ATCGAAGAAATTGTCAATGCACTTCAAGTTATACCAGACATGGACGACGAGAACTTCTTGGAAGCTTGTAAACTTCTAGAAAACGAGGAAAAAGCCAAGG TATTTGTGGCAATGGACGTAAAACAGAGAAGGAAATGGCTATTTAGAAAGCTTTACAGATAG
AA sequence Show only first row Show all	>Potri.013G025200.3 pacid=42812190 polypeptide=Potri.013G025200.3.p locus=Potri.013G025200 ID=Potri.013G025200.3.v4.1 annot-version=v4.1 MASQMLPINDRMRINWTSMMERYFIDLMLDQLHRGNRMGHTFNKQAWTDMLTMFNSRFGTKYDRDTLKSHYSNLWKQYNDVKNLLEQSGFSWDDNRKMVV ASDDAWATIIKANSDAQYYWRKFLVNFNDLCLIFAYTAADGRYSRSSHDIDLDDDIQGLNFDAGMGGFPSESTNCVKAKWTSAMDRFFLELMLVEVKKGS KNNNTFSKEAWKDMLTLFNAKFCSQYGKNVLKRRYKKLFKYYCEMRSLLERKAHPDMHSYRKKTLLNYQDLSLVYGNELISGHQGCMHQDENFEDVTLQV KTDRNKGHHHSVRSDVGPCWKSSMDRYFIDLLQNQALIGNKIGHELTTEAWVELTRLFKAKFGSQYDDCILKNQFNHLRTRYNDIKFLLEQSGFSWDETR DMVTAEDCVWDSYTKVYPHVQSYRNKSVASYYKLCVIYGEESSNGRYSDMAQQADIDSKPPVLMVGEEDQCLANGDCSKPDWTPSMDRYFIDLMLDQVHR GNKSSYTLDDQAWIDMAVMLNERFGSQHEKDILRQRHESLGKLFNGMKNLLGQKGFSWNETQQLVKAYDDVWEAYSKEHPNARSYRSTPKPDYNDLYLIY GNSISDEGHNQSGQGAKNCNRGFWNADWTPPMDQLFINLMLEHVRQGSMVDQRFNKQAWSDMVSKFSAAFGSQHDQYVLERRFMNLRKLFGDMKNLLDQS GFAWDDRRHMIIAGDSLWNAYLKDYPDAHPYRNRALPNYDDLFLIYGDKNNHESNHHHSVVGNGHVLGSNVDDEDGLSPIDSNHPWINWTKPMEIYFIKL MSEQVLEGNKNHETFNEQAWAWIVAAFNEKFRLLCEREAVESWYLSLMKEYSNITNILNQNGFAWDETEQMVIADDDDWSAYIKEHPGAMKYKGRVLGSY NDLCVIYGNSVAAGRSSYLGVNTVIDNNAFDMGIDGVFGDAPYPTGKLEISDQRHKRKSLSSSTTMASRKVHRPKRGEAKEPVGLKPMGVMEEHNEERIS IEEIVNALQVIPDMDDENFLEACKLLENEEKAKVFVAMDVKQRRKWLFRKLYR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G24960			unknown protein		Potri.013G025200 [exp]	0	1
AT5G62000	ARF	ORE14, HSS, ARF...	ORESARA 14, HLS1 SUPPRESSOR, A...		Potri.001G066200 [exp]	2.00	0.7884
AT2G29200		APUM1	pumilio 1 (.1)		Potri.008G058300 [exp]	5.00	0.8005
AT4G27190			NB-ARC domain-containing disea...		Potri.001G433466 [exp]	5.47	0.7905
AT4G10730			Protein kinase superfamily pro...		Potri.001G084700 [exp]	6.48	0.7384
AT3G23780		NRPE2, DMS2, DR...	DEFECTIVE IN MERISTEM SILENCIN...		Potri.018G019100 [exp]	8.77	0.7660
AT3G57910			D111/G-patch domain-containing...		Potri.016G048600 [exp]	9.16	0.7492
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Potri.006G077800 [exp]	13.26	0.7617
AT5G22450			unknown protein		Potri.009G164400 [exp]	14.38	0.7609
AT1G33440			Major facilitator superfamily ...		Potri.019G067500 [exp]	15.55	0.7513
AT1G09730			Cysteine proteinases superfami...		Potri.005G155600 [exp]	16.52	0.7471

Compare expression of checked genes

Potri.013G025200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.