Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06130 97 / 1e-21 Heavy metal transport/detoxification superfamily protein (.1.2) AT5G19090 97 / 4e-21 Heavy metal transport/detoxification superfamily protein (.1.2.3) AT3G05220 88 / 4e-18 Heavy metal transport/detoxification superfamily protein (.1.2) AT5G27690 71 / 7e-13 Heavy metal transport/detoxification superfamily protein (.1) AT1G23000 67 / 1e-11 Heavy metal transport/detoxification superfamily protein (.1) AT5G37860 63 / 1e-10 Heavy metal transport/detoxification superfamily protein (.1) AT4G23882 58 / 6e-09 Heavy metal transport/detoxification superfamily protein (.1) AT5G17450 56 / 6e-09 HIPP21 heavy metal associated isoprenylated plant protein 21, Heavy metal transport/detoxification superfamily protein (.1.2) AT1G71050 56 / 6e-09 HIPP20 heavy metal associated isoprenylated plant protein 20, Heavy metal transport/detoxification superfamily protein (.1) AT1G22990 53 / 5e-08 HIPP22 heavy metal associated isoprenylated plant protein 22, Heavy metal transport/detoxification superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G036300 [exp] 147 / 4e-38 AT3G06130 114 / 7e-28 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.008G202800 [exp] 94 / 3e-20 AT3G06130 150 / 6e-41 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.008G128400 [exp] 77 / 9e-15 AT1G23000 137 / 1e-36 Heavy metal transport/detoxification superfamily protein (.1) Potri.010G114300 [exp] 77 / 1e-14 AT1G23000 128 / 2e-33 Heavy metal transport/detoxification superfamily protein (.1) Potri.010G024700 [exp] 71 / 2e-13 AT5G27690 114 / 2e-29 Heavy metal transport/detoxification superfamily protein (.1) Potri.014G132000 [exp] 71 / 3e-13 AT5G27690 114 / 4e-29 Heavy metal transport/detoxification superfamily protein (.1) Potri.002G206900 [exp] 70 / 6e-13 AT5G27690 111 / 3e-28 Heavy metal transport/detoxification superfamily protein (.1) Potri.004G091700 [exp] 63 / 9e-11 AT1G23000 99 / 1e-23 Heavy metal transport/detoxification superfamily protein (.1) Potri.005G026100 [exp] 62 / 2e-10 AT5G27690 100 / 3e-24 Heavy metal transport/detoxification superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029942 [exp] 108 / 8e-25 AT5G19090 125 / 1e-31 Heavy metal transport/detoxification superfamily protein (.1.2.3) Lus10004465 [exp] 106 / 6e-24 AT5G19090 122 / 2e-30 Heavy metal transport/detoxification superfamily protein (.1.2.3) Lus10031514 [exp] 105 / 7e-24 AT5G19090 118 / 1e-28 Heavy metal transport/detoxification superfamily protein (.1.2.3) Lus10041228 [exp] 91 / 2e-19 AT3G06130 149 / 3e-41 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10032445 [exp] 74 / 6e-14 AT1G23000 129 / 2e-34 Heavy metal transport/detoxification superfamily protein (.1) Lus10015174 [exp] 66 / 3e-11 AT5G27690 124 / 2e-32 Heavy metal transport/detoxification superfamily protein (.1) Lus10031495 [exp] 66 / 3e-11 AT5G27690 124 / 2e-32 Heavy metal transport/detoxification superfamily protein (.1) Lus10019676 [exp] 58 / 1e-09 AT4G39700 211 / 3e-71 Heavy metal transport/detoxification superfamily protein (.1) Lus10016436 [exp] 58 / 1e-09 AT4G39700 209 / 1e-70 Heavy metal transport/detoxification superfamily protein (.1) Lus10009116 [exp] 56 / 6e-08 AT2G02000 248 / 3e-75 glutamate decarboxylase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00403 [poplar] [flax] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Potri.013G025300.5 pacid=42811619 polypeptide=Potri.013G025300.5.p locus=Potri.013G025300 ID=Potri.013G025300.5.v4.1 annot-version=v4.1 ATGAATAAACAGGAGGTTATGAAGATGCAGCAGACTCATATTTTGAAAGTGAACATAGAGTGTCACTGTGATGGATGCAAGAAGAAAATAAAGAAACTGC TTCAAAAAATTGAGGGGGTGTATACTACCACAGTAAATGCAGAGCAAGGGAAGGTAACTGTGACAGGAAATGTAGATCCGGCCAAACTCGTTAAAAAGCT CGAGAAGTCGGGGAAACATGCAGAGTTATGGGGAGGTCAAAAGGGCTCAAACAACTTCCAAAACCTTAATAATCAATTCAAGAACATGCAAATGGGCGGT GGCTGTGGCGGTGGCGGTGGCAAAGATAACAAGTCTGGGAAGGGTGGAAAAGGTCAACAAGGACAACAAGTACAGATGATGCAACAACAGCTGAAAGGGT CTAAGGATCCAAAGATGCCTCAAAATAAAGACCAGAAGTCAGTTAAGTTCAATCTGAATGAGGATGATTTTGATGCAAGTGATGATGAATTTGATGACGA GTTCGATGATGAATTTGATGATGAGTTCGATGATGAATTTGATGAGGACGAGGAAGAGTTTGGTCATGGTCATGGCCATGGCTTGCCTAACAAGATGATG CCTATGATGGGTAATGGCCATGGACCTAATGGTATGCCAATCAACAAGATGATGCCTATGATGGGTAATGGCCATGGACCTAATGGTATGCCAATCAACA AGATGATGCCTATGATGGGTAATGGCCATGGACCTCATGGTATGCCAATCAACAAGATGATGCCGATGATGGGTAATGGCCATGGACCTAATGGTATGCC AAACAAGATGATGCCGATGATGGGTAATGGTCATGGACCTCATGGTATGCCAAACAATATGATGGCCATGATGGGCAATGGCCATGGGCCTCATGGTATG CCAAACAAAATGATGCCCATGATGGGCAATGGCCATGGGCCTCATGGTATGATGAGTGGACCTGGGTTTATTGATAAAAAGGGTGGCGGGGGTGGGGGAG GTGGCGGGGGTGGAAAGGGCAAGAAAGGTGGTGGCGGTGGTGATGATGTTTTTGAGATACCTGTGGTAATGAAGGGCAAGGGAGACAACAAAGATGGCAA GGATGGTAAAGGAGGAAAGAAAGGTGGAGGTGGTGATGACAAGAACGGTAAAAGCAAGGGGGAGAACAAGAAACAAGATGGTAAAGACAAAAAAGATAGT AAAAGAGGTGGTGGGTTCCTGGGCTTCGGTAAGAAGAGTAAAAAAGAAGACGATAGTAGTACTCATAAGACTGCTACCAATAATGGCAGTGCAGGTGTAC ATGGAAACAATAATGGCAATGGGCCCAAGAAAGGTGCAGGCAAAAATGGTGGGGTCCATGATATTAACAAGATGAAACAAGGGTTCCCTGAAATTGATGG AGCAGGTAATGGTGGTCACAAGAATATGGTCCATGTGGGTCAGATGGGTCCAATGGGCCCCATGGGTCCTATGGGCCCGATGAATACAATGGGCCCGATG GGCAATTATGCTAGGATGGGTAATGTGCCAACAGTGCAAGGACTGCCGGCACCAGGGGCAATGAACGGTGGCTATTATCAAGGGATGGTGGGGCAGGGGC AGGGGCAGGGGCAAGGGCAGGGGAATCCTTATAATCAGCAATACATGGCAATGATGATGAATCAACAAAGGCAGCAGCAAGGGAATGAAATGTTTCAACC GATGATGTATGCGCGCCCTCAGCCGGCCGTTAACTACATGCCGCCCCCCATGCCGCCTTCTATGGCGACCGATCAGTACACGCACTTCTTCAGCGATGAG AACACCGAAAGTTGCAGAATAATGTGA
AA sequence Show only first row Show all	>Potri.013G025300.5 pacid=42811619 polypeptide=Potri.013G025300.5.p locus=Potri.013G025300 ID=Potri.013G025300.5.v4.1 annot-version=v4.1 MNKQEVMKMQQTHILKVNIECHCDGCKKKIKKLLQKIEGVYTTTVNAEQGKVTVTGNVDPAKLVKKLEKSGKHAELWGGQKGSNNFQNLNNQFKNMQMGG GCGGGGGKDNKSGKGGKGQQGQQVQMMQQQLKGSKDPKMPQNKDQKSVKFNLNEDDFDASDDEFDDEFDDEFDDEFDDEFDEDEEEFGHGHGHGLPNKMM PMMGNGHGPNGMPINKMMPMMGNGHGPNGMPINKMMPMMGNGHGPHGMPINKMMPMMGNGHGPNGMPNKMMPMMGNGHGPHGMPNNMMAMMGNGHGPHGM PNKMMPMMGNGHGPHGMMSGPGFIDKKGGGGGGGGGGGKGKKGGGGGDDVFEIPVVMKGKGDNKDGKDGKGGKKGGGGDDKNGKSKGENKKQDGKDKKDS KRGGGFLGFGKKSKKEDDSSTHKTATNNGSAGVHGNNNGNGPKKGAGKNGGVHDINKMKQGFPEIDGAGNGGHKNMVHVGQMGPMGPMGPMGPMNTMGPM GNYARMGNVPTVQGLPAPGAMNGGYYQGMVGQGQGQGQGQGNPYNQQYMAMMMNQQRQQQGNEMFQPMMYARPQPAVNYMPPPMPPSMATDQYTHFFSDE NTESCRIM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G06130			Heavy metal transport/detoxifi...		Potri.013G025300 [exp]	0	1
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.008G077800 [exp]	2.64	0.8807
AT2G45590			Protein kinase superfamily pro...		Potri.014G072900 [exp]	3.16	0.8515
AT1G65920			Regulator of chromosome conden...		Potri.017G139600 [exp]	3.16	0.8244
AT3G07610		IBM1	increase in bonsai methylation...		Potri.005G082901 [exp]	8.48	0.8132
AT3G54630			unknown protein		Potri.001G208700 [exp]	9.21	0.7764
AT5G55820		WYR	WYRD, unknown protein		Potri.001G368200 [exp]	11.22	0.8085
AT5G67100		ICU2	INCURVATA2, DNA-directed DNA p...		Potri.007G045300 [exp]	11.83	0.7991
AT1G79910			Regulator of Vps4 activity in ...		Potri.001G181300 [exp]	15.16	0.7203
AT5G38880			unknown protein		Potri.004G114600 [exp]	15.29	0.7506
AT5G13140			Pollen Ole e 1 allergen and ex...		Potri.003G167100 [exp]	15.87	0.7456

Compare expression of checked genes

Potri.013G025300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.