Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19080 303 / 4e-100 RING/U-box superfamily protein (.1) AT3G06140 294 / 8e-97 RING/U-box superfamily protein (.1) AT3G09770 242 / 3e-76 LOG2 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) AT3G53410 228 / 4e-72 RING/U-box superfamily protein (.1) AT5G03200 218 / 1e-67 RING/U-box superfamily protein (.1) AT4G24204 58 / 3e-10 RING/U-box superfamily protein (.1.2.3) AT1G59560 54 / 8e-08 ZCF61, DAL2 DIAP1-like protein 2, E3 Ubiquitin ligase family protein (.1) AT3G23280 50 / 1e-06 XBAT35 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) AT4G03965 48 / 2e-06 RING/U-box superfamily protein (.1) AT5G04460 50 / 3e-06 RING/U-box superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G036400 [exp] 551 / 0 AT3G06140 296 / 2e-97 RING/U-box superfamily protein (.1) Potri.008G202700 [exp] 336 / 9e-113 AT5G19080 340 / 4e-115 RING/U-box superfamily protein (.1) Potri.010G030600 [exp] 329 / 5e-110 AT3G06140 344 / 7e-117 RING/U-box superfamily protein (.1) Potri.006G128700 [exp] 263 / 5e-85 AT3G09770 380 / 4e-131 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Potri.016G089000 [exp] 204 / 8e-62 AT3G09770 301 / 1e-100 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Potri.001G074800 [exp] 53 / 4e-07 AT1G30860 179 / 1e-46 RING/U-box superfamily protein (.1) Potri.010G070750 [exp] 52 / 6e-07 AT3G23280 425 / 4e-146 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Potri.018G011300 [exp] 50 / 6e-07 AT3G23280 105 / 6e-26 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Potri.005G225300 [exp] 51 / 8e-07 AT3G23280 355 / 2e-118 XB3 ortholog 5 in Arabidopsis thaliana (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004419 [exp] 343 / 2e-115 AT3G06140 350 / 4e-119 RING/U-box superfamily protein (.1) Lus10034030 [exp] 341 / 8e-115 AT5G19080 344 / 1e-116 RING/U-box superfamily protein (.1) Lus10037412 [exp] 257 / 1e-82 AT3G09770 351 / 6e-120 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Lus10041300 [exp] 254 / 1e-81 AT3G09770 352 / 3e-120 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Lus10023182 [exp] 251 / 3e-81 AT3G09770 364 / 5e-126 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Lus10015080 [exp] 252 / 4e-80 AT3G09770 364 / 9e-125 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Lus10035335 [exp] 50 / 2e-07 AT4G22250 114 / 4e-33 RING/U-box superfamily protein (.1) Lus10029993 [exp] 50 / 2e-07 AT4G03965 118 / 2e-34 RING/U-box superfamily protein (.1) Lus10038656 [exp] 52 / 8e-07 AT5G04460 930 / 0.0 RING/U-box superfamily protein (.1.2.3) Lus10037928 [exp] 52 / 1e-06 AT5G04460 912 / 0.0 RING/U-box superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13920 [poplar] [flax] zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Potri.013G025400.2 pacid=42811003 polypeptide=Potri.013G025400.2.p locus=Potri.013G025400 ID=Potri.013G025400.2.v4.1 annot-version=v4.1 ATGGGTTCCTCCTCAAGTAGACATGGAAGAAACCACCCCCAGAACAACCATCTCCACCACCGTCAAAACCAACCAGACCCTTCCCTGCCTTCCTCCACAA CCACCCCAATTCAACAACTTCCCTCTTTCTCCACCAACAATACTAATAACCTTCCCTCGCAAAGCAGTAATTCGATACCATCTAGTAATAATTTTTATAC AAATACTATACAGCCATCATCATCATCACCGCCACCACAAGGGCCACAAAGTTATTATTTTGCAGCAAATGCACCATATACTACTCCTCCTATGATTCCC ACAAGTTCTGCTTACGGTTCTTTTAGTTACCATCACCATCCTCCTCCTCCCCAGCCTCCTCTTCCTTTCAGCAATAATGGGTGGGCCCCGTATAATTATC ATCAACCTGGTTTCATGGGCCCACAAATACCACCACCACAGGTGAAGCCTCATAATTTAGGACTTGTGCAGCAGCCACGTTATGTTGACCATAATCACGC AAAGACAATCAAGAATGTTGTGAATGTGAACAAGGCTAGTATTAAAGTTGTTGCTGATGAGAATAATTTGGATTGTCACTTGGTTTCCTTCACTTTTGAT GCTGTTGTTGATGGCAGCATCACCATATTTTATTTTGGAAAGGAAGGACACAATTGTACATTTATGCCAGCATTCCCTGAAATCTATATGCCAAGGAAAA TCCCCTTTGAGAAAGGAGCGGGTAAAAAATTCTCTCAACCATCAGGAACTGGCATTGACCTTGGATTTTTTGAGTTGGATCAGCTATCGAAGCCCTCACC CGAGGAAGATATTTTCCCGCTTGTTATCTTTGCTGAAGCATGCTCACCCTCTCTCTCTACTTCTACGAGCCAAGAGCCCGACAAGCCTCTGCCTACCATG TCTACTCATGCACAAATAACTGAAGCTGTCTTGGAGAAAAAAAACGAAGGCCATTTTCAAGTAAAAGTAATCAAGCAAATCTTATGGATTGATGGGATTC GTTATGAGTTGCGAGAGATCTATGGCATTGCCAATTCTGACAGTGCAGGCTTTGATGGGATTGATTCAGGAACAGAATGTGTTATTTGCATGAGTGAGCC ACAGGATACAGCCGTTTTACCTTGTCGACATATGTGCTTGTGCAGCGGATGTGCGAAGGAGTTGAGGTCTCGATCAGATACGTGTCCTATATGCCGCCAA CCCATCCAGGAACTTATGGAGATCAAGGTTAACAAATGTGGGAGTTCTTCTTAA
AA sequence Show only first row Show all	>Potri.013G025400.2 pacid=42811003 polypeptide=Potri.013G025400.2.p locus=Potri.013G025400 ID=Potri.013G025400.2.v4.1 annot-version=v4.1 MGSSSSRHGRNHPQNNHLHHRQNQPDPSLPSSTTTPIQQLPSFSTNNTNNLPSQSSNSIPSSNNFYTNTIQPSSSSPPPQGPQSYYFAANAPYTTPPMIP TSSAYGSFSYHHHPPPPQPPLPFSNNGWAPYNYHQPGFMGPQIPPPQVKPHNLGLVQQPRYVDHNHAKTIKNVVNVNKASIKVVADENNLDCHLVSFTFD AVVDGSITIFYFGKEGHNCTFMPAFPEIYMPRKIPFEKGAGKKFSQPSGTGIDLGFFELDQLSKPSPEEDIFPLVIFAEACSPSLSTSTSQEPDKPLPTM STHAQITEAVLEKKNEGHFQVKVIKQILWIDGIRYELREIYGIANSDSAGFDGIDSGTECVICMSEPQDTAVLPCRHMCLCSGCAKELRSRSDTCPICRQ PIQELMEIKVNKCGSSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19080			RING/U-box superfamily protein...		Potri.013G025400 [exp]	0	1
AT4G04450	WRKY	ATWRKY42, WRKY4...	WRKY family transcription fact...		Potri.004G007500 [exp]	2.23	0.9357	Pt-WRKY6.1
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Potri.019G123500 [exp]	2.82	0.9281
AT1G01720	NAC	ATAF1, ANAC002	Arabidopsis NAC domain contain...		Potri.005G180200 [exp]	6.92	0.9179	Pt-ATAF1.1
AT5G61210		SNP33, ATSNAP33...	soluble N-ethylmaleimide-sensi...		Potri.015G049000 [exp]	9.53	0.9077
AT3G22370		AtHSR3, ATAOX1A...	hyper-sensitivity-related 3, a...		Potri.015G019800 [exp]	10.24	0.9223
AT1G21380			Target of Myb protein 1 (.1)		Potri.005G184900 [exp]	10.24	0.8686
AT1G05340			unknown protein		Potri.016G019201 [exp]	11.83	0.8923
AT5G24520		ATTTG1, URM23, ...	UNARMED 23, TRANSPARENT TESTA ...		Potri.012G006100 [exp]	11.87	0.8221	TTG1.2
AT5G15130	WRKY	ATWRKY72, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.015G064100 [exp]	12.24	0.9091
AT1G52190			Major facilitator superfamily ...		Potri.006G240000 [exp]	12.36	0.9053

Compare expression of checked genes

Potri.013G025400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.