Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16710 247 / 1e-84 glycosyltransferase family protein 28 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G036500 [exp] 332 / 3e-118 AT4G16710 253 / 4e-87 glycosyltransferase family protein 28 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018891 [exp] 276 / 6e-96 AT4G16710 258 / 5e-89 glycosyltransferase family protein 28 (.1.2) Lus10028587 [exp] 275 / 1e-95 AT4G16710 263 / 5e-91 glycosyltransferase family protein 28 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF13528 [poplar] [flax] Glyco_trans_1_3 Glycosyl transferase family 1
Representative CDS sequence Show only first row Show all	>Potri.013G025600.2 pacid=42812634 polypeptide=Potri.013G025600.2.p locus=Potri.013G025600 ID=Potri.013G025600.2.v4.1 annot-version=v4.1 ATGGGAGATTCCGGGGATAGTGTGAAGCAAGAGAAGAAAGTGGTATTTGTAACTGTAGGAACTACATTGTTTGATGCTCTAGTGAGAACAGTGGATACTA AGGAAGTCAAACAAGAGTTATTAAGAAAAGGGTATACCGACCTTGTTATTCAAATGGGTCGAGGATCCTACACTCCTACTAAGTGTGATGGAGGACATGG ATCTCTGGCTGTTGATTACTTCACTTTTTCTCCAAGCATTGCAGACCATCTGAGATCAGCATCTCTTGTCATCAGCCATGCAGGGTCTGGGAGCGTATTT GAAACTCTGCAGCTTGGTAAACCTCTAATTGTAGTGGTAAATGAAGATTTGATGGACAATCATCAAAGTGAACTTGCAGAAGAACTAGCAGAGAGGAAGC ATTTATATTGTGCTCATCCTCAAACGCTTCATCAGACAATATCTGATATGAATGTGGAGTCCCTCCTTCCGTACCCATCAGGTGATGCCACACCGCTTGC CAAGCTTATGAACACGTTTCTTGGTTTCCCAGACGACTGA
AA sequence Show only first row Show all	>Potri.013G025600.2 pacid=42812634 polypeptide=Potri.013G025600.2.p locus=Potri.013G025600 ID=Potri.013G025600.2.v4.1 annot-version=v4.1 MGDSGDSVKQEKKVVFVTVGTTLFDALVRTVDTKEVKQELLRKGYTDLVIQMGRGSYTPTKCDGGHGSLAVDYFTFSPSIADHLRSASLVISHAGSGSVF ETLQLGKPLIVVVNEDLMDNHQSELAEELAERKHLYCAHPQTLHQTISDMNVESLLPYPSGDATPLAKLMNTFLGFPDD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G16710			glycosyltransferase family pro...		Potri.013G025600 [exp]	0	1
AT5G53860		EMB64, EMB2737	EMBRYO DEFECTIVE 64, embryo de...		Potri.001G398900 [exp]	4.47	0.9169
AT1G53320	TUB	AtTLP7	tubby like protein 7 (.1)		Potri.011G109300 [exp]	4.58	0.8946
AT2G35060		KUP11	K+ uptake permease 11, K+ upta...		Potri.001G123700 [exp]	5.47	0.8970	Pt-KUP10.1
AT2G38130		ATMAK3	Acyl-CoA N-acyltransferases (N...		Potri.011G139300 [exp]	6.32	0.8930	ATMAK3.5
AT5G10350			RNA-binding (RRM/RBD/RNP motif...		Potri.007G095800 [exp]	6.63	0.8726
					Potri.007G010000 [exp]	9.16	0.9047
AT5G09920		NRPB4, ATRPB15....	RNA polymerase II, Rpb4, core ...		Potri.005G084900 [exp]	11.26	0.8309
AT1G25145		AtLpxC4	lipid X C4, UDP-3-O-acyl N-ace...		Potri.010G106400 [exp]	12.72	0.8743
AT5G53560		B5#2, ATB5-A, A...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Potri.004G157800 [exp]	12.72	0.8970
AT3G58170		ATBET11, ATBS14...	ARABIDOPSIS THALIANA BET1P/SFT...		Potri.002G041500 [exp]	12.84	0.8668	Pt-BET11.2

Compare expression of checked genes

Potri.013G025600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.