Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54820 440 / 2e-152 Protein kinase superfamily protein (.1) AT3G58690 358 / 5e-121 Protein kinase superfamily protein (.1) AT5G02800 273 / 3e-88 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT3G20530 265 / 6e-85 Protein kinase superfamily protein (.1) AT5G18610 268 / 1e-84 Protein kinase superfamily protein (.1.2) AT2G20300 273 / 3e-84 ALE2 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) AT3G24790 258 / 9e-83 Protein kinase superfamily protein (.1) AT1G20650 258 / 3e-82 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) AT5G13160 259 / 7e-82 PBS1 avrPphB susceptible 1, Protein kinase superfamily protein (.1) AT3G07070 258 / 8e-82 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G036600 [exp] 622 / 0 AT1G54820 434 / 4e-150 Protein kinase superfamily protein (.1) Potri.014G143100 [exp] 375 / 8e-128 AT3G58690 573 / 0.0 Protein kinase superfamily protein (.1) Potri.010G021500 [exp] 276 / 1e-87 AT5G18610 779 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G205700 [exp] 275 / 2e-87 AT5G18610 783 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G215100 [exp] 268 / 1e-86 AT5G18610 595 / 0.0 Protein kinase superfamily protein (.1.2) Potri.003G166900 [exp] 270 / 6e-86 AT5G13160 745 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.001G060800 [exp] 269 / 1e-85 AT5G13160 714 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.006G133300 [exp] 267 / 1e-85 AT5G02800 566 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Potri.001G421400 [exp] 266 / 1e-85 AT3G20530 587 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029948 [exp] 486 / 9e-170 AT1G54820 469 / 1e-162 Protein kinase superfamily protein (.1) Lus10004461 [exp] 475 / 2e-165 AT1G54820 465 / 4e-161 Protein kinase superfamily protein (.1) Lus10033606 [exp] 361 / 3e-122 AT3G58690 606 / 0.0 Protein kinase superfamily protein (.1) Lus10017647 [exp] 357 / 1e-120 AT3G58690 597 / 0.0 Protein kinase superfamily protein (.1) Lus10012814 [exp] 275 / 2e-87 AT5G18610 807 / 0.0 Protein kinase superfamily protein (.1.2) Lus10033966 [exp] 275 / 2e-87 AT5G18610 805 / 0.0 Protein kinase superfamily protein (.1.2) Lus10041426 [exp] 270 / 5e-87 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Lus10015756 [exp] 271 / 4e-86 AT5G13160 732 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Lus10040050 [exp] 268 / 4e-86 AT3G20530 555 / 0.0 Protein kinase superfamily protein (.1) Lus10036499 [exp] 267 / 1e-85 AT5G18610 575 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.013G025700.2 pacid=42810854 polypeptide=Potri.013G025700.2.p locus=Potri.013G025700 ID=Potri.013G025700.2.v4.1 annot-version=v4.1 ATGGAACCTAGCACCACTGGTGAACCTGCAAAGTCACATGGAAACCATACCAATAAGCATCATAGCTTGCATTCTCAACTCCATGATCACCATCATGGCA TCCTCTCTTCCACCTCTATCCTTATAATCATCATATCAGCTATTTCTGTTGTTCTAGTTCTCACAATCTTTCTTATTATAGCAATGCTAAGAAGACTCAA ATCTTCTAAGAATAGAGGCAGTTGCAGAGACTTGAGCAGTTGCAACACTAGCAAGTTCGTTGCTCATACCAACATAAGCTTCACTTCAAGCCCAGATGTT AACGGTGGATGTCTATATGGAAGCAATTTGGGTCATAAGCCTCCAAGTAAACACAAAGGAGTCCAAGTTTTCACATACAAAGAGCTTGAGATTGCCACAA ACAAATTCAGCGCATCAAATGTGATAGGGAATGGAGGGTATGGAGTGGTGTATAGAGGTACCCTAAGTGATGGGACTGTGGCTGCAATTAAGATGCTCCA TAGAGAAGGGAAGCAAGGAGAGCGGGCATTCAGGGTAGAGGTAGATTTGCTAAGCAGGTTGCACTCACCATACCTGGTGGAACTACTTGGTTATTGTGCT GACCAAAACCATAGGCTCTTAATATTTGAATTTATGCATAATGGTAGTCTTCAACACCATCTCCATCACAAGCAATATCGACCTTTGGAATGGGGGACAC GATTGAGGATAGCCCTTGGTTGTGCTAGGGCCCTGGAGTTCCTTCATGAGCATACTATCCCGGCGGTTATCCATCGTGACCTCAAGTGTAGTAACATTTT ACTAGACCAAGATTTTAGGGCTAAGGTTTCTGATTTCGGATTGGCTAAGATGGGTTCGGACAGGATCAACGGTCAGAATTCGACGCGTGTTCTGGGGACC ACTGGTTATCTAGCACCAGAGTATGCTTCAACTGGCAAGCTTACCACAAAATCAGATGTATACAGCTACGGAGTTGTTCTTTTACAGATCTTAACTGGTC GTATACCGATTGATACCAAGCGGCCCTCCGGTGAACATGTTCTTGTCTCCTGGGCTCTTCCACGGCTAACTAACAGAGATAAGGTAATGGAAATGGTTGA TCCAGCATTGCAAGGCCAGTATTTAATGAAGGATTTGATTCAGGTAGCTGCTATTGCAGCAGTGTGCGTGCAACCAGAAGCAGATTATCGGCCTTTAATG ACAGATGTTGTTCAGTCACTCGTCCCTCTGGTCAAGAACCTCTCTTCTGTATCTTCCACTGGTTCCTCTAGATTTATGAATCAGTCAAGTCCAAGGCCTA TGTAG
AA sequence Show only first row Show all	>Potri.013G025700.2 pacid=42810854 polypeptide=Potri.013G025700.2.p locus=Potri.013G025700 ID=Potri.013G025700.2.v4.1 annot-version=v4.1 MEPSTTGEPAKSHGNHTNKHHSLHSQLHDHHHGILSSTSILIIIISAISVVLVLTIFLIIAMLRRLKSSKNRGSCRDLSSCNTSKFVAHTNISFTSSPDV NGGCLYGSNLGHKPPSKHKGVQVFTYKELEIATNKFSASNVIGNGGYGVVYRGTLSDGTVAAIKMLHREGKQGERAFRVEVDLLSRLHSPYLVELLGYCA DQNHRLLIFEFMHNGSLQHHLHHKQYRPLEWGTRLRIALGCARALEFLHEHTIPAVIHRDLKCSNILLDQDFRAKVSDFGLAKMGSDRINGQNSTRVLGT TGYLAPEYASTGKLTTKSDVYSYGVVLLQILTGRIPIDTKRPSGEHVLVSWALPRLTNRDKVMEMVDPALQGQYLMKDLIQVAAIAAVCVQPEADYRPLM TDVVQSLVPLVKNLSSVSSTGSSRFMNQSSPRPM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G54820			Protein kinase superfamily pro...		Potri.013G025700 [exp]	0	1
AT2G03810			18S pre-ribosomal assembly pro...		Potri.015G048400 [exp]	1.00	0.9203
AT4G24250		ATMLO13, MLO13	MILDEW RESISTANCE LOCUS O 13, ...		Potri.003G151750 [exp]	2.23	0.8614
AT1G44000			unknown protein		Potri.002G075700 [exp]	9.79	0.8896
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Potri.018G072700 [exp]	21.26	0.7902
AT4G25960		ABCB2, PGP2	ATP-binding cassette B2, P-gly...		Potri.001G139700 [exp]	23.83	0.8133
AT5G02890			HXXXD-type acyl-transferase fa...		Potri.001G152500 [exp]	34.52	0.8776
AT3G21870		CYCP2;1	cyclin p2;1 (.1)		Potri.007G121500 [exp]	37.88	0.8491
AT1G03790	C3HZnF	SOM	SOMNUS, Zinc finger C-x8-C-x5-...		Potri.017G013400 [exp]	56.28	0.7733
AT5G63180			Pectin lyase-like superfamily ...		Potri.011G093400 [exp]	60.66	0.7897
AT2G44810		DAD1	DEFECTIVE ANTHER DEHISCENCE 1,...		Potri.014G047700 [exp]	64.65	0.7943

Compare expression of checked genes

Potri.013G025700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.