Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05200 259 / 2e-83 ATL6 RING/U-box superfamily protein (.1) AT5G27420 224 / 3e-70 CNI1, ATL31 carbon/nitrogen insensitive 1 (.1) AT1G72200 197 / 5e-59 RING/U-box superfamily protein (.1) AT1G22500 192 / 2e-57 AtATL15 Arabidopsis thaliana Arabidopsis toxicos en levadura 15, RING/U-box superfamily protein (.1) AT4G09120 176 / 9e-52 RING/U-box superfamily protein (.1) AT2G35000 171 / 2e-49 ATL9 Arabidopsis toxicos en levadura 9, RING/U-box superfamily protein (.1) AT4G09130 166 / 5e-48 RING/U-box superfamily protein (.1) AT1G35330 162 / 1e-46 RING/U-box superfamily protein (.1) AT4G40070 160 / 7e-46 RING/U-box superfamily protein (.1) AT2G34990 155 / 3e-44 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G036800 [exp] 513 / 0 AT3G05200 261 / 7e-84 RING/U-box superfamily protein (.1) Potri.005G160900 [exp] 211 / 3e-64 AT1G22500 203 / 5e-61 Arabidopsis thaliana Arabidopsis toxicos en levadura 15, RING/U-box superfamily protein (.1) Potri.003G093500 [exp] 124 / 6e-33 AT4G17920 186 / 1e-57 RING/U-box superfamily protein (.1) Potri.001G140900 [exp] 122 / 3e-32 AT4G17920 183 / 3e-56 RING/U-box superfamily protein (.1) Potri.018G085001 [exp] 114 / 3e-28 AT4G28890 290 / 2e-94 RING/U-box superfamily protein (.1) Potri.015G056800 [exp] 107 / 2e-25 AT5G05810 263 / 8e-85 RING/U-box superfamily protein (.1) Potri.018G042501 [exp] 105 / 3e-25 AT2G20030 244 / 2e-77 RING/U-box superfamily protein (.1) Potri.006G239500 [exp] 100 / 3e-23 AT2G20030 248 / 1e-78 RING/U-box superfamily protein (.1) Potri.017G072300 [exp] 100 / 4e-23 AT5G40250 372 / 7e-128 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004460 [exp] 341 / 3e-115 AT3G05200 307 / 6e-102 RING/U-box superfamily protein (.1) Lus10000333 [exp] 320 / 9e-107 AT3G05200 309 / 2e-102 RING/U-box superfamily protein (.1) Lus10015167 [exp] 258 / 2e-83 AT3G05200 226 / 2e-71 RING/U-box superfamily protein (.1) Lus10031515 [exp] 252 / 2e-81 AT3G05200 232 / 1e-73 RING/U-box superfamily protein (.1) Lus10029949 [exp] 193 / 4e-59 AT3G05200 171 / 1e-50 RING/U-box superfamily protein (.1) Lus10041134 [exp] 180 / 8e-53 AT1G72200 182 / 3e-54 RING/U-box superfamily protein (.1) Lus10036466 [exp] 180 / 1e-52 AT1G72200 186 / 6e-55 RING/U-box superfamily protein (.1) Lus10029794 [exp] 179 / 6e-52 AT1G72200 219 / 1e-66 RING/U-box superfamily protein (.1) Lus10004572 [exp] 121 / 3e-31 AT4G17920 209 / 3e-66 RING/U-box superfamily protein (.1) Lus10000487 [exp] 117 / 1e-29 AT4G17920 196 / 4e-61 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.013G025800.1 pacid=42811055 polypeptide=Potri.013G025800.1.p locus=Potri.013G025800 ID=Potri.013G025800.1.v4.1 annot-version=v4.1 ATGGATTCTTACACGTTCATACACAGGATCCTTCCTCTCTTGATTCTCTTCTTCCTTGCAACTCCTTGCGGTGTCGTTTCGCAAAACAACAGCTCGAACG ACAGGGGAATGTACAACAACTACGCGCAGGTGACACCGTCGATGGCGATTATCATTGTCGTTTTGGTAGCTGCTCTCTTCTCCATGGGCTTCTTCTCAAT CTACATCCGCCACTGCAACGAAGCCAGCGCAAACGGGAGTATCAGGGCATTGGGTGTAGTCGGACTCTCTCGACGGGCCGCCGCATCGCGTGGGCTTGAT CCTGGCGTTATCGAGACGTTTCCGACTTTAATCTACTCGGTTGTGAAAGGCTTGAAGATTGGTAACGGCGCGTTAGAATGCGCCGTTTGTTTAAACGAAT TCGAAGACGATGAAACGCTGCGTTTGATTCCGAATTGTGACCACGTCTTTCATCCTGATTGCATTGATACTTGGCTGGAGTCTCACACTACCTGTCCTGT TTGTAGAGCTGATTTGACCAAACCCGCCGACCCGGTATCCCAACTCAGTGAATTGCACAGCCCCGAGTTGGACCTCGAGGCCCAAAACGGCGCCCTTGGG ATCGAGCCAGAAAACGGGAATGCTAATGTGGAAGTGCAAGTGGTTGGACCTGAGCCTGACGACGTGAGTGTGAATGTGAATAAAACTTTGAATAGGAACC GGACACGTGGGTCAAGATCGGGTAGGCCACCGAGGTTTCCTCGGTCACATTCGACCGGGCATTCTTTGGTTCAACCGGGAGAGAACACCGATCGCTTTAC TTTGAGATTGCCGGTTGAGGTTAGGAAACAGGTGATGAACCGGAAGTTAAACCGGTCTACGAGTATGGTGGTGCTGCCTAGACAAGGAAGTTCAAGGAAG GGTTATAGGACCGGAGTTGGTGAAGGGAGTTCAAGAAAGGTGTTAAATTATAAGAGACTTGAGAAATTGGACCTAGAACCGAGGTCAGACCGGTGGGTTT TTGGTAGGAACCCGTCATTCTTAGCAAGAGCGTCGTCGTTTCTATCGAGAGCCTCATCGTCGGTTAGGTCACCAAAAGTGGTGGCTGCTAGTGAAAACCA AGGGGGTTCGTCTAGACTCGGTGGATCAGACGGAGGTGAATCTAGCAGACCACCGGTTTAG
AA sequence Show only first row Show all	>Potri.013G025800.1 pacid=42811055 polypeptide=Potri.013G025800.1.p locus=Potri.013G025800 ID=Potri.013G025800.1.v4.1 annot-version=v4.1 MDSYTFIHRILPLLILFFLATPCGVVSQNNSSNDRGMYNNYAQVTPSMAIIIVVLVAALFSMGFFSIYIRHCNEASANGSIRALGVVGLSRRAAASRGLD PGVIETFPTLIYSVVKGLKIGNGALECAVCLNEFEDDETLRLIPNCDHVFHPDCIDTWLESHTTCPVCRADLTKPADPVSQLSELHSPELDLEAQNGALG IEPENGNANVEVQVVGPEPDDVSVNVNKTLNRNRTRGSRSGRPPRFPRSHSTGHSLVQPGENTDRFTLRLPVEVRKQVMNRKLNRSTSMVVLPRQGSSRK GYRTGVGEGSSRKVLNYKRLEKLDLEPRSDRWVFGRNPSFLARASSFLSRASSSVRSPKVVAASENQGGSSRLGGSDGGESSRPPV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G05200		ATL6	RING/U-box superfamily protein...		Potri.013G025800 [exp]	0	1
AT5G39040		AtALS1, ABCB27,...	ARABIDOPSIS THALIANA TRANSPORT...		Potri.015G059800 [exp]	3.46	0.9351
AT3G21780		UGT71B6	UDP-glucosyl transferase 71B6 ...		Potri.016G016800 [exp]	8.24	0.9282
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.001G134425 [exp]	9.69	0.9347
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Potri.001G265600 [exp]	10.19	0.8794	Pt-CCD1.6
AT1G75800			Pathogenesis-related thaumatin...		Potri.001G221800 [exp]	10.39	0.9091
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Potri.006G155000 [exp]	10.95	0.8857
AT1G61560		ATMLO6, MLO6	MILDEW RESISTANCE LOCUS O 6, S...		Potri.009G011900 [exp]	12.96	0.9101
AT3G57870		SCE1A, SCE1, AH...	SUMO CONJUGATING ENZYME 1A, EM...		Potri.014G024801 [exp]	16.43	0.8591
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.001G134500 [exp]	18.81	0.9302
AT5G60710			Zinc finger (C3HC4-type RING f...		Potri.009G010350 [exp]	20.97	0.8949

Compare expression of checked genes

Potri.013G025800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.