Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72210 243 / 2e-78 bHLH bHLH096 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G22490 234 / 2e-75 bHLH bHLH094 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G24140 184 / 9e-55 bHLH bHLH097, FMA FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G01460 181 / 2e-54 bHLH bHLH057 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G46690 177 / 8e-53 bHLH bHLH071 beta HLH protein 71 (.1) AT5G65320 173 / 1e-51 bHLH bHLH099 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G46810 167 / 2e-48 bHLH bHLH070 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G61950 159 / 3e-46 bHLH bHLH067 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT3G06120 124 / 4e-34 bHLH MUTE, bHLH045 MUTE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G53210 94 / 2e-21 bHLH SPCH, bHLH098 SPEECHLESS, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G039800 [exp] 599 / 0 AT1G72210 231 / 5e-74 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G101900 [exp] 280 / 6e-93 AT1G72210 256 / 4e-84 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.007G097600 [exp] 241 / 6e-78 AT1G72210 167 / 2e-49 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.003G093200 [exp] 232 / 2e-74 AT5G46690 191 / 8e-59 beta HLH protein 71 (.1) Potri.005G071100 [exp] 230 / 1e-73 AT1G72210 177 / 1e-53 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G141100 [exp] 215 / 5e-68 AT5G46690 222 / 6e-71 beta HLH protein 71 (.1) Potri.014G106300 [exp] 192 / 6e-58 AT2G46810 247 / 9e-79 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G180300 [exp] 191 / 1e-57 AT2G46810 228 / 2e-71 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G314400 [exp] 191 / 3e-57 AT3G24140 399 / 2e-137 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029950 [exp] 289 / 4e-96 AT1G72210 226 / 4e-72 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10000332 [exp] 285 / 3e-94 AT1G22490 221 / 4e-70 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10015902 [exp] 223 / 2e-69 AT1G72210 235 / 7e-75 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10001271 [exp] 188 / 5e-57 AT1G72210 194 / 1e-59 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10009475 [exp] 186 / 4e-56 AT1G72210 199 / 8e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10016680 [exp] 187 / 3e-55 AT3G24140 358 / 2e-120 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10010101 [exp] 167 / 1e-50 AT2G46810 199 / 1e-63 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10007139 [exp] 171 / 2e-49 AT3G24140 308 / 2e-101 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10012603 [exp] 160 / 7e-48 AT2G46810 202 / 4e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10010503 [exp] 124 / 2e-33 AT3G06120 191 / 4e-61 MUTE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.013G025900.1 pacid=42812505 polypeptide=Potri.013G025900.1.p locus=Potri.013G025900 ID=Potri.013G025900.1.v4.1 annot-version=v4.1 ATGGCATTAGAGGCTGCAGTCTTTCAACAAGACTGGTTTGGCCACAGCAGCAAAGAACTCTACAATTTTCCAGGTGGGAATTGGAGCTATGACTTTGGCC TAGACCAAAATGAAGAAGATCAAGACAAAAGCTGCTCTTCGTATTTTCTCGAGAACCAAACAGAAACATTTCTTCATGGGGATTGGAACCCTTTGCCGCC ACCTGATTCCATGGTGCCTCCGTTCAGTGATTTGCAATTAACTTGTAGCAACATTCCATCCTTATCAGAAGCTAGCATTAATGCAGCAAATGGATTAATG AGTACTACTCCAACTAGTGATCATCATCACCACTTGGGTGAATCATCAGCAATGCCTGCTACTCGTGTTAAGAGAAGGAGGTCAAGGTGTAAGAAGAACA AAGAAGAGATTGAGAATCAGAGAATGACTCACATTGCTGTAGAGAGAAACCGAAGAAAGCAAATGAATGAGTATCTTTCAGTTCTGAGATCTTTAATGCC TGAGTCCTACGTTCAAAGGGGTGATCAAGCTTCAATTATTGGAGGCGCCATTAATTTTGTCAAGGAGCTTGAACAAAAGTTACAAGTTCTTGGTGCCTGT AAAGAAATGAAAGAAAAACCAAATGGTGATGATCAGCAACATGTTTCTTCACTGCCTTTCTCTAAATTCTTTATATTTCCACAGTACACAACAAGCTCAA TTCATTGCGAAAGCTCGGCTGGCAAGGATGAAAAACTGATGAAGTCTCAATCTGCTATAGCTGACATAGAAGTGACCATGGTGGAGAGTCATGCGAACCT CAAAATAAGATCGAAAAGGCGGCCGAAACAGCTCTTGAAGGTTGTTTCTGCTCTGCATAGTATGCGGCTCACTGTTCTTCACCTAAATGTCTCAACAGTT GATCAAATTGTGCTTTATTCTCTAAGTGTCAAGGTAGAAGATGATTGTAAGCTGAGTTCTGTGGATGAGATTGCTACAGCTGTGTATCAGATGCTAGGTA GGATTCAAGAAGAGTCTATGCTGAATTGTTAG
AA sequence Show only first row Show all	>Potri.013G025900.1 pacid=42812505 polypeptide=Potri.013G025900.1.p locus=Potri.013G025900 ID=Potri.013G025900.1.v4.1 annot-version=v4.1 MALEAAVFQQDWFGHSSKELYNFPGGNWSYDFGLDQNEEDQDKSCSSYFLENQTETFLHGDWNPLPPPDSMVPPFSDLQLTCSNIPSLSEASINAANGLM STTPTSDHHHHLGESSAMPATRVKRRRSRCKKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPESYVQRGDQASIIGGAINFVKELEQKLQVLGAC KEMKEKPNGDDQQHVSSLPFSKFFIFPQYTTSSIHCESSAGKDEKLMKSQSAIADIEVTMVESHANLKIRSKRRPKQLLKVVSALHSMRLTVLHLNVSTV DQIVLYSLSVKVEDDCKLSSVDEIATAVYQMLGRIQEESMLNC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Potri.013G025900 [exp]	0	1
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Potri.005G039800 [exp]	1.00	0.9503
AT5G15230		GASA4	GAST1 protein homolog 4 (.1.2)		Potri.017G083000 [exp]	2.44	0.9262	GASA4.2
AT1G74520		ATHVA22A	HVA22 homologue A (.1)		Potri.015G062800 [exp]	6.32	0.8786
AT5G15350		AtENODL17	early nodulin-like protein 17 ...		Potri.017G088600 [exp]	8.71	0.9054
AT2G39700		ATHEXPALPHA1.6,...	expansin A4 (.1)		Potri.001G240900 [exp]	9.48	0.8825	Pt-EXPA6.2
AT2G46170			Reticulon family protein (.1.2...		Potri.002G165400 [exp]	9.89	0.8885
AT5G07240		IQD24	IQ-domain 24 (.1)		Potri.012G139800 [exp]	10.24	0.8713
AT2G31200		ADF6, ATADF6	actin depolymerizing factor 6 ...		Potri.002G038800 [exp]	10.77	0.8320	Pt-ADF6.3
AT5G06470			Glutaredoxin family protein (....		Potri.006G201300 [exp]	11.22	0.8964
AT5G51560			Leucine-rich repeat protein ki...		Potri.012G128700 [exp]	11.40	0.8978

Compare expression of checked genes

Potri.013G025900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.